Rmu_sc0000423.1_g000029

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000423.1
OG0000369
Physical Location & Seq
Forward (+)
103332 .. 104690
1359 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000423.1_g000029.1.cds

Sequence Viewer

Length: 1218 bp
atggaaactagtagaagcaaagttgttaaggtgagcgatactttaacactaggtctgcaggaagatgtcctagtagaaattctctcatatctgcctgtcaagtctttacttaggtttcgttgcgtatcgcaagagtggtatgctctcaccaaaagtccttatttcatttccagacaccttgtgcatcgctctagatgctctaatccacatcatccttgtcttctctttctctcgcgtctagctggaagttctgaaaataatttcaaaccactacttggattctcattgcttggagatgaagaaacaacgtttttgagattacctttctggaaccttattacaagccaaagaaggggtggtttatggcttgtgggatctagtaatggcctggtttgctgtgttctgttaattgggattgagaatgataagaatagaactacagagggtgaagaaaataatgctactgtgttccaacaattaatagtagtatggaacccagcaacagaacgatttaggtttcttcctaaacctaataataatattcctttggatcaggacgaggaggaggatatactacgtgtaaaggacaactctttgtcctgtcctcttataggttttgatttcgtacatgatcatgacattactgaatataaactggtcagagttttccatcatgatagtgatgatccctacgatcatggcaaagtacagcgagcaggggacgagtgctgtgttctgtcattcaatttacgtgaggaggttttcaatgtgatacagctaccaatggatctacgaaatcatgatgattggggcggactccaattatattcatggagaaattcaccggcgactgtagcacttgattattcggccaatgactatctcagcgcagcgctttgggtgatgagtactgatcaagaatcaaagaggagttgtaagaatggtgcacaaatacaaaatccagcttggactcgacagttcagattcaaatacttagtaatttcagaagcaacgcgcctcctgggaagttggaaagatcaatttctctttgcatccgacaaaagtgatgaagtttttgatgcggcagctgataatattgtgcctcaagacctgttttcgtatgaccctaaaagcgagacaaatagaaaaattctcaatgatggggagaggatcaagttttgtggagtaaattatgtggagagcctagttccagtctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

405

Amino Acids

46.42

Weight (kDa)

5.38

Isoelectric Point (pI)

50.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis pycom17g23320
rosa_chinensis RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 275
AccII CGCG 2 cut(s) 235, 1015
AciI CCGC 2 cut(s) 813, 1082
AclI AACGTT 1 cut(s) 308
AclWI GGATC 5 cut(s) 382, 558, 680, 795, 1178
AcoI YGGCCR 1 cut(s) 870
AcsI RAATTY 3 cut(s) 78, 838, 1149
AdeI CACNNNGTG 1 cut(s) 181
AfaI GTAC 3 cut(s) 627, 708, 910
AfeI AGCGCT 1 cut(s) 894
AfiI CCNNNNNNNGG 3 cut(s) 275, 352, 611
AflIII ACRYGT 1 cut(s) 577
AgsI TTSAA 4 cut(s) 265, 745, 766, 988
AhlI ACTAGT 1 cut(s) 8
AjnI CCWGG 2 cut(s) 387, 1020
AluBI AGCT 4 cut(s) 242, 778, 965, 1088
AluI AGCT 4 cut(s) 242, 778, 965, 1088
Alw21I GWGCWC 1 cut(s) 949
Alw26I GTCTC 1 cut(s) 1130
Alw44I GTGCAC 1 cut(s) 945
AlwI GGATC 5 cut(s) 382, 558, 680, 795, 1178
Aor51HI AGCGCT 1 cut(s) 894
AoxI GGCC 2 cut(s) 385, 870
ApaLI GTGCAC 1 cut(s) 945
ApeKI GCWGC 2 cut(s) 890, 1085
ApoI RAATTY 3 cut(s) 78, 838, 1149
AseI ATTAAT 1 cut(s) 479
AspLEI GCGC 3 cut(s) 890, 895, 1017
AsuHPI GGTGA 5 cut(s) 43, 139, 458, 834, 913
BaeGI GKGCMC 1 cut(s) 949
BbsI GAAGAC 1 cut(s) 212
Bbv12I GWGCWC 1 cut(s) 949
BbvI GCAGC 2 cut(s) 902, 1097
BccI CCATC 2 cut(s) 678, 1154
BciT130I CCWGG 2 cut(s) 389, 1022
BclI TGATCA 2 cut(s) 631, 913
BcoDI GTCTC 1 cut(s) 1130
BcuI ACTAGT 1 cut(s) 8
BfaI CTAG 8 cut(s) 9, 50, 71, 192, 239, 378, 1205, 1216
BfmI CTRYAG 3 cut(s) 56, 438, 852
BfoI RGCGCY 1 cut(s) 896
BisI GCNGC 3 cut(s) 891, 1083, 1086
BlsI GCNGC 3 cut(s) 892, 1084, 1087
BmcAI AGTACT 1 cut(s) 910
Bme1390I CCNGG 2 cut(s) 389, 1022
BmiI GGNNCC 2 cut(s) 332, 494
BmrFI CCNGG 2 cut(s) 389, 1022
BmsI GCATC 4 cut(s) 185, 193, 1061, 1069
BpiI GAAGAC 1 cut(s) 212
BpuEI CTTGAG 1 cut(s) 1089
BsaAI YACGTR 2 cut(s) 578, 752
BsaJI CCNNGG 1 cut(s) 1021
Bsc4I CCNNNNNNNGG 3 cut(s) 275, 352, 611
Bse118I RCCGGY 1 cut(s) 844
Bse1I ACTGG 2 cut(s) 660, 1211
Bse3DI GCAATG 1 cut(s) 284
BseBI CCWGG 2 cut(s) 389, 1022
BseDI CCNNGG 1 cut(s) 1021
BseGI GGATG 2 cut(s) 211, 1052
BseLI CCNNNNNNNGG 3 cut(s) 275, 352, 611
BseMI GCAATG 1 cut(s) 284
BseMII CTCAG 1 cut(s) 898
BseNI ACTGG 2 cut(s) 660, 1211
BseRI GAGGAG 4 cut(s) 575, 578, 770, 943
BseSI GKGCMC 1 cut(s) 949
BseXI GCAGC 2 cut(s) 902, 1097
BseYI CCCAGC 1 cut(s) 496
Bsh1236I CGCG 2 cut(s) 235, 1015
BshFI GGCC 2 cut(s) 387, 872
BsiHKAI GWGCWC 1 cut(s) 949
BsiSI CCGG 1 cut(s) 845
BslFI GGGAC 1 cut(s) 734
BslI CCNNNNNNNGG 3 cut(s) 275, 352, 611
BsmAI GTCTC 1 cut(s) 1130
BsmFI GGGAC 1 cut(s) 734
BsnI GGCC 2 cut(s) 387, 872
Bsp1286I GDGCHC 1 cut(s) 949
Bsp143I GATC 9 cut(s) 374, 550, 631, 685, 694, 787, 913, 1036, 1170
BspACI CCGC 2 cut(s) 813, 1082
BspANI GGCC 2 cut(s) 387, 872
BspCNI CTCAG 1 cut(s) 897
BspFNI CGCG 2 cut(s) 235, 1015
BspHI TCATGA 3 cut(s) 634, 673, 799
BspLI GGNNCC 2 cut(s) 332, 494
BspMAI CTGCAG 1 cut(s) 60
BspPI GGATC 5 cut(s) 382, 558, 680, 795, 1178
BsrDI GCAATG 1 cut(s) 284
BsrFI RCCGGY 1 cut(s) 844
BsrI ACTGG 2 cut(s) 660, 1211
BssAI RCCGGY 1 cut(s) 844
BssECI CCNNGG 1 cut(s) 1021
BssMI GATC 9 cut(s) 374, 550, 631, 685, 694, 787, 913, 1036, 1170
Bst2UI CCWGG 2 cut(s) 389, 1022
Bst4CI ACNGT 3 cut(s) 466, 853, 978
BstBAI YACGTR 2 cut(s) 578, 752
BstC8I GCNNGC 1 cut(s) 714
BstDEI CTNAG 3 cut(s) 110, 884, 994
BstENI CCTNNNNNAGG 1 cut(s) 609
BstF5I GGATG 2 cut(s) 211, 1052
BstFNI CGCG 2 cut(s) 235, 1015
BstH2I RGCGCY 1 cut(s) 896
BstHHI GCGC 3 cut(s) 890, 895, 1017
BstKTI GATC 9 cut(s) 377, 553, 634, 688, 697, 790, 916, 1039, 1173
BstMAI GTCTC 1 cut(s) 1130
BstMBI GATC 9 cut(s) 374, 550, 631, 685, 694, 787, 913, 1036, 1170
BstMWI GCNNNNNNNGC 3 cut(s) 195, 393, 854
BstNI CCWGG 2 cut(s) 389, 1022
BstSCI CCNGG 2 cut(s) 387, 1020
BstSFI CTRYAG 3 cut(s) 56, 438, 852
BstSLI GKGCMC 1 cut(s) 949
BstUI CGCG 2 cut(s) 235, 1015
BstV1I GCAGC 2 cut(s) 902, 1097
BstV2I GAAGAC 1 cut(s) 212
BstX2I RGATCY 2 cut(s) 374, 787
BstYI RGATCY 2 cut(s) 374, 787
BsuRI GGCC 2 cut(s) 387, 872
BtgZI GCGATG 1 cut(s) 170
BtsCI GGATG 2 cut(s) 211, 1052
Cac8I GCNNGC 1 cut(s) 714
CciI TCATGA 3 cut(s) 634, 673, 799
CfoI GCGC 3 cut(s) 890, 895, 1017
Cfr10I RCCGGY 1 cut(s) 844
CseI GACGC 1 cut(s) 224
Csp6I GTAC 3 cut(s) 626, 707, 909
CspCI CAANNNNNGTGG 2 cut(s) 1162, 1197
CviAII CATG 6 cut(s) 629, 635, 674, 698, 800, 831
CviJI RGCY 9 cut(s) 242, 345, 367, 387, 778, 872, 965, 1088, 1203
CviKI_1 RGCY 9 cut(s) 242, 345, 367, 387, 778, 872, 965, 1088, 1203
CviQI GTAC 3 cut(s) 626, 707, 909
DdeI CTNAG 3 cut(s) 110, 884, 994
DpnI GATC 9 cut(s) 376, 552, 633, 687, 696, 789, 915, 1038, 1172
DpnII GATC 9 cut(s) 374, 550, 631, 685, 694, 787, 913, 1036, 1170
DraIII CACNNNGTG 1 cut(s) 181
EaeI YGGCCR 1 cut(s) 870
EciI GGCGGA 1 cut(s) 828
Eco47III AGCGCT 1 cut(s) 894
EcoNI CCTNNNNNAGG 1 cut(s) 609
EcoRII CCWGG 2 cut(s) 387, 1020
FaeI CATG 6 cut(s) 632, 638, 677, 701, 803, 834
FaqI GGGAC 1 cut(s) 734
FatI CATG 6 cut(s) 628, 634, 673, 697, 799, 830
FbaI TGATCA 2 cut(s) 631, 913
Fnu4HI GCNGC 3 cut(s) 891, 1083, 1086
FokI GGATG 2 cut(s) 198, 1039
Fsp4HI GCNGC 3 cut(s) 891, 1083, 1086
FspBI CTAG 8 cut(s) 9, 50, 71, 192, 239, 378, 1205, 1216
GlaI GCGC 3 cut(s) 889, 894, 1016
GluI GCNGC 3 cut(s) 891, 1083, 1086
GsaI CCCAGC 1 cut(s) 500
HaeII RGCGCY 1 cut(s) 896
HaeIII GGCC 2 cut(s) 387, 872
HapII CCGG 1 cut(s) 845
HgaI GACGC 1 cut(s) 224
HhaI GCGC 3 cut(s) 890, 895, 1017
Hin1II CATG 6 cut(s) 632, 638, 677, 701, 803, 834
Hin6I GCGC 3 cut(s) 888, 893, 1015
HinP1I GCGC 3 cut(s) 888, 893, 1015
HinfI GANTC 5 cut(s) 279, 816, 920, 970, 984
HpaII CCGG 1 cut(s) 845
HphI GGTGA 5 cut(s) 43, 139, 458, 834, 913
Hpy166II GTNNAC 1 cut(s) 947
Hpy188I TCNGA 5 cut(s) 253, 662, 983, 1006, 1057
Hpy188III TCNNGA 9 cut(s) 171, 192, 328, 554, 635, 674, 800, 917, 1106
Hpy8I GTNNAC 1 cut(s) 947
HpyAV CCTTC 1 cut(s) 345
HpyCH4III ACNGT 3 cut(s) 466, 853, 978
HpyCH4IV ACGT 3 cut(s) 308, 577, 751
HpyCH4V TGCA 4 cut(s) 58, 184, 947, 1052
HpyF10VI GCNNNNNNNGC 3 cut(s) 195, 393, 854
HpyF3I CTNAG 3 cut(s) 110, 884, 994
HpySE526I ACGT 3 cut(s) 308, 577, 751
Hsp92II CATG 6 cut(s) 632, 638, 677, 701, 803, 834
HspAI GCGC 3 cut(s) 888, 893, 1015
Ksp22I TGATCA 2 cut(s) 631, 913
Kzo9I GATC 9 cut(s) 374, 550, 631, 685, 694, 787, 913, 1036, 1170
Lsp1109I GCAGC 2 cut(s) 902, 1097
LweI GCATC 4 cut(s) 185, 193, 1061, 1069
MaeI CTAG 8 cut(s) 9, 50, 71, 192, 239, 378, 1205, 1216
MaeII ACGT 3 cut(s) 308, 577, 751
MalI GATC 9 cut(s) 376, 552, 633, 687, 696, 789, 915, 1038, 1172
MboI GATC 9 cut(s) 374, 550, 631, 685, 694, 787, 913, 1036, 1170
MboII GAAGA 5 cut(s) 74, 212, 311, 461, 512
MflI RGATCY 2 cut(s) 374, 787
MhlI GDGCHC 1 cut(s) 949
MlyI GAGTC 2 cut(s) 810, 964
MmeI TCCRAC 3 cut(s) 496, 1010, 1080
MseI TTAA 4 cut(s) 27, 44, 407, 479
MslI CAYNNNNRTG 2 cut(s) 633, 678
MspA1I CMGCKG 1 cut(s) 1088
MspI CCGG 1 cut(s) 845
MspR9I CCNGG 2 cut(s) 389, 1022
MteI GCGCNGCGC 1 cut(s) 891
MvaI CCWGG 2 cut(s) 389, 1022
MvnI CGCG 2 cut(s) 235, 1015
MwoI GCNNNNNNNGC 3 cut(s) 195, 393, 854
NdeII GATC 9 cut(s) 374, 550, 631, 685, 694, 787, 913, 1036, 1170
NlaIII CATG 6 cut(s) 632, 638, 677, 701, 803, 834
NlaIV GGNNCC 2 cut(s) 332, 494
PagI TCATGA 3 cut(s) 634, 673, 799
PfeI GAWTC 3 cut(s) 279, 920, 984
PflMI CCANNNNNTGG 1 cut(s) 275
PkrI GCNGC 3 cut(s) 892, 1084, 1087
PleI GAGTC 2 cut(s) 810, 964
PpsI GAGTC 2 cut(s) 810, 964
Ppu21I YACGTR 2 cut(s) 578, 752
PshBI ATTAAT 1 cut(s) 479
Psp1406I AACGTT 1 cut(s) 308
Psp6I CCWGG 2 cut(s) 387, 1020
PspFI CCCAGC 1 cut(s) 496
PspGI CCWGG 2 cut(s) 387, 1020
PspN4I GGNNCC 2 cut(s) 332, 494
PstI CTGCAG 1 cut(s) 60
PsuI RGATCY 2 cut(s) 374, 787
PvuII CAGCTG 1 cut(s) 1088
RsaI GTAC 3 cut(s) 627, 708, 910
RsaNI GTAC 3 cut(s) 626, 707, 909
RseI CAYNNNNRTG 2 cut(s) 633, 678
SaqAI TTAA 4 cut(s) 27, 44, 407, 479
SatI GCNGC 3 cut(s) 891, 1083, 1086
Sau3AI GATC 9 cut(s) 374, 550, 631, 685, 694, 787, 913, 1036, 1170
ScaI AGTACT 1 cut(s) 910
SchI GAGTC 2 cut(s) 810, 964
ScrFI CCNGG 2 cut(s) 389, 1022
SduI GDGCHC 1 cut(s) 949
SfaNI GCATC 4 cut(s) 185, 193, 1061, 1069
SfcI CTRYAG 3 cut(s) 56, 438, 852
SgrAI CRCCGGYG 1 cut(s) 844
SmiMI CAYNNNNRTG 2 cut(s) 633, 678
SmlI CTYRAG 1 cut(s) 1104
SmoI CTYRAG 1 cut(s) 1104
SpeI ACTAGT 1 cut(s) 8
SsiI CCGC 2 cut(s) 813, 1082
SspI AATATT 2 cut(s) 541, 1096
SspMI CTAG 8 cut(s) 9, 50, 71, 192, 239, 378, 1205, 1216
StyD4I CCNGG 2 cut(s) 387, 1020
TaaI ACNGT 3 cut(s) 466, 853, 978
TaiI ACGT 3 cut(s) 311, 580, 754
TaqI TCGA 1 cut(s) 973
TatI WGTACW 2 cut(s) 706, 908
TauI GCSGC 1 cut(s) 1085
TfiI GAWTC 3 cut(s) 279, 920, 984
Tru1I TTAA 4 cut(s) 27, 44, 407, 479
Tru9I TTAA 4 cut(s) 27, 44, 407, 479
TseI GCWGC 2 cut(s) 890, 1085
TspDTI ATGAA 4 cut(s) 154, 312, 819, 1083
Van91I CCANNNNNTGG 1 cut(s) 275
VneI GTGCAC 1 cut(s) 945
VspI ATTAAT 1 cut(s) 479
XagI CCTNNNNNAGG 1 cut(s) 609
XapI RAATTY 3 cut(s) 78, 838, 1149
XbaI TCTAGA 1 cut(s) 191
XcmI CCANNNNNNNNNTGG 1 cut(s) 353
XspI CTAG 8 cut(s) 9, 50, 71, 192, 239, 378, 1205, 1216
ZrmI AGTACT 1 cut(s) 910
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.