Rh3AG172000

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000369
Physical Location & Seq
Reverse (-)
15947578 .. 15952576
4999 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG172000.1

Sequence Viewer

Length: 858 bp
ATGTTGATTACACGAAATTCTCTTGTTGAGGACTGCGCTTTTGACATTTCTGATGAGGAGGAGGATATACTACGTGTAAAGGACAACTCTTTGTCCTGTCCTCTTATAGGTTTTGATTTCGTACATGATCATGACATTACTGAATATAAACTGGTCAGAGTTTTCCATCATGATAGTGATGATCCCTACGATCATGGCAAAGTACTTACAACTTTTCGAGCTCAAGTCTTCGTCCAAATCACAAATTCTTGGAGACAAGCCAAGAACGAGTTAGGGTTTCCGTCATGTGAAAATTCTTTTGCATCAACTTCGATTACATTGAATGGAGTGCTGTATTGGAAGGTACAGCGAGCAGGGGACGAGTGCTGTGTTCTGTCATTCAATTTACGTGAGGAGGTTTTCAATGTGATACAGCTACCAATCGATCTACGAAATCATGATGATTGGGGCGGACTCCAATTATATTCATGGAGAAATTCACCGGCGACTGTAGCACTTGATTATTCGGCCAATGACGATCTCAACGCAGCGCTTTGGGTGATGAGTACTGATCAAGAATCAAAGAGGAGTTGTAAGAATGTTGCACAAATACAAAATCCAGCTTGGACTCGACAGTTCAGATTCAAATACTTAGTAATTTCAGAAGCAACGCGCCTCCTGGGAAGTTGGAAAGATCAATTTCTCTTTGCATCCGACAAAAGTGATGAAGTTTTTGATGCGGCAGCTGATAATATTGTGCCTCAAGACCTGTTTTCGTATGACCCTAAAAGCGAGACAAAGAGAAAAATTCTCAAAGATGGAGAGAGGATCAAGTTTTGTGGAGGAGTAAATTATGTGGAGAGCCTAGTTCCAGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

285

Amino Acids

32.67

Weight (kDa)

4.85

Isoelectric Point (pI)

44.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 36 - 205 1.3e-12 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis pycom17g23320
rosa_chinensis RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 652
AciI CCGC 2 cut(s) 450, 719
AclWI GGATC 2 cut(s) 176, 815
AcoI YGGCCR 1 cut(s) 507
AcsI RAATTY 5 cut(s) 16, 244, 292, 475, 786
AfaI GTAC 4 cut(s) 123, 204, 345, 547
AfeI AGCGCT 1 cut(s) 531
AfiI CCNNNNNNNGG 1 cut(s) 107
AflIII ACRYGT 1 cut(s) 73
AgsI TTSAA 4 cut(s) 322, 382, 403, 625
AjnI CCWGG 1 cut(s) 657
AluBI AGCT 4 cut(s) 221, 415, 602, 725
AluI AGCT 4 cut(s) 221, 415, 602, 725
Alw21I GWGCWC 1 cut(s) 223
Alw26I GTCTC 2 cut(s) 247, 767
AlwI GGATC 2 cut(s) 176, 815
Aor51HI AGCGCT 1 cut(s) 531
AoxI GGCC 1 cut(s) 507
ApeKI GCWGC 2 cut(s) 527, 722
ApoI RAATTY 5 cut(s) 16, 244, 292, 475, 786
ArsI GACNNNNNNTTYG 2 cut(s) 23, 55
AspLEI GCGC 3 cut(s) 38, 532, 654
AsuHPI GGTGA 2 cut(s) 471, 550
BanII GRGCYC 1 cut(s) 223
BbsI GAAGAC 1 cut(s) 220
Bbv12I GWGCWC 1 cut(s) 223
BbvI GCAGC 2 cut(s) 539, 734
BccI CCATC 2 cut(s) 174, 791
BcgI CGANNNNNNTGC 2 cut(s) 291, 325
BciT130I CCWGG 1 cut(s) 659
BclI TGATCA 2 cut(s) 127, 550
BcoDI GTCTC 2 cut(s) 247, 767
BfaI CTAG 2 cut(s) 845, 856
BfmI CTRYAG 1 cut(s) 489
BfoI RGCGCY 1 cut(s) 533
BisI GCNGC 3 cut(s) 528, 720, 723
BlsI GCNGC 3 cut(s) 529, 721, 724
BmcAI AGTACT 2 cut(s) 204, 547
Bme1390I CCNGG 1 cut(s) 659
BmrFI CCNGG 1 cut(s) 659
BmsI GCATC 3 cut(s) 311, 698, 706
BpiI GAAGAC 1 cut(s) 220
BpuEI CTTGAG 2 cut(s) 207, 726
Bsa29I ATCGAT 1 cut(s) 423
BsaAI YACGTR 2 cut(s) 74, 389
BsaJI CCNNGG 1 cut(s) 658
Bsc4I CCNNNNNNNGG 1 cut(s) 107
Bse118I RCCGGY 1 cut(s) 481
Bse1I ACTGG 2 cut(s) 156, 851
BseBI CCWGG 1 cut(s) 659
BseCI ATCGAT 1 cut(s) 423
BseDI CCNNGG 1 cut(s) 658
BseGI GGATG 1 cut(s) 689
BseLI CCNNNNNNNGG 1 cut(s) 107
BseNI ACTGG 2 cut(s) 156, 851
BseRI GAGGAG 5 cut(s) 71, 74, 407, 580, 837
BseXI GCAGC 2 cut(s) 539, 734
Bsh1236I CGCG 1 cut(s) 652
BshFI GGCC 1 cut(s) 509
BshVI ATCGAT 1 cut(s) 423
BsiHKAI GWGCWC 1 cut(s) 223
BsiSI CCGG 1 cut(s) 482
BslFI GGGAC 1 cut(s) 371
BslI CCNNNNNNNGG 1 cut(s) 107
BsmAI GTCTC 2 cut(s) 247, 767
BsmFI GGGAC 1 cut(s) 371
BsnI GGCC 1 cut(s) 509
Bsp1286I GDGCHC 1 cut(s) 223
Bsp143I GATC 8 cut(s) 127, 181, 190, 424, 517, 550, 673, 807
BspACI CCGC 2 cut(s) 450, 719
BspANI GGCC 1 cut(s) 509
BspDI ATCGAT 1 cut(s) 423
BspFNI CGCG 1 cut(s) 652
BspHI TCATGA 3 cut(s) 130, 169, 436
BspPI GGATC 2 cut(s) 176, 815
BsrFI RCCGGY 1 cut(s) 481
BsrI ACTGG 2 cut(s) 156, 851
BssAI RCCGGY 1 cut(s) 481
BssECI CCNNGG 1 cut(s) 658
BssMI GATC 8 cut(s) 127, 181, 190, 424, 517, 550, 673, 807
Bst2UI CCWGG 1 cut(s) 659
Bst4CI ACNGT 2 cut(s) 490, 615
BstBAI YACGTR 2 cut(s) 74, 389
BstC8I GCNNGC 1 cut(s) 351
BstDEI CTNAG 1 cut(s) 631
BstENI CCTNNNNNAGG 1 cut(s) 105
BstF5I GGATG 1 cut(s) 689
BstFNI CGCG 1 cut(s) 652
BstH2I RGCGCY 1 cut(s) 533
BstHHI GCGC 3 cut(s) 38, 532, 654
BstKTI GATC 8 cut(s) 130, 184, 193, 427, 520, 553, 676, 810
BstMAI GTCTC 2 cut(s) 247, 767
BstMBI GATC 8 cut(s) 127, 181, 190, 424, 517, 550, 673, 807
BstMWI GCNNNNNNNGC 1 cut(s) 491
BstNI CCWGG 1 cut(s) 659
BstSCI CCNGG 1 cut(s) 657
BstSFI CTRYAG 1 cut(s) 489
BstUI CGCG 1 cut(s) 652
BstV1I GCAGC 2 cut(s) 539, 734
BstV2I GAAGAC 1 cut(s) 220
Bsu15I ATCGAT 1 cut(s) 423
BsuRI GGCC 1 cut(s) 509
BsuTUI ATCGAT 1 cut(s) 423
BtsCI GGATG 1 cut(s) 689
Cac8I GCNNGC 1 cut(s) 351
CciI TCATGA 3 cut(s) 130, 169, 436
CfoI GCGC 3 cut(s) 38, 532, 654
Cfr10I RCCGGY 1 cut(s) 481
ClaI ATCGAT 1 cut(s) 423
Csp6I GTAC 4 cut(s) 122, 203, 344, 546
CspCI CAANNNNNGTGG 2 cut(s) 799, 834
CviAII CATG 7 cut(s) 125, 131, 170, 194, 285, 437, 468
CviJI RGCY 7 cut(s) 221, 260, 415, 509, 602, 725, 843
CviKI_1 RGCY 7 cut(s) 221, 260, 415, 509, 602, 725, 843
CviQI GTAC 4 cut(s) 122, 203, 344, 546
DdeI CTNAG 1 cut(s) 631
DpnI GATC 8 cut(s) 129, 183, 192, 426, 519, 552, 675, 809
DpnII GATC 8 cut(s) 127, 181, 190, 424, 517, 550, 673, 807
EaeI YGGCCR 1 cut(s) 507
EciI GGCGGA 1 cut(s) 465
Ecl136II GAGCTC 1 cut(s) 221
Eco24I GRGCYC 1 cut(s) 223
Eco47III AGCGCT 1 cut(s) 531
Eco53kI GAGCTC 1 cut(s) 221
EcoICRI GAGCTC 1 cut(s) 221
EcoNI CCTNNNNNAGG 1 cut(s) 105
EcoRII CCWGG 1 cut(s) 657
EcoT38I GRGCYC 1 cut(s) 223
FaeI CATG 7 cut(s) 128, 134, 173, 197, 288, 440, 471
FaqI GGGAC 1 cut(s) 371
FatI CATG 7 cut(s) 124, 130, 169, 193, 284, 436, 467
FbaI TGATCA 2 cut(s) 127, 550
Fnu4HI GCNGC 3 cut(s) 528, 720, 723
FokI GGATG 1 cut(s) 676
FriOI GRGCYC 1 cut(s) 223
Fsp4HI GCNGC 3 cut(s) 528, 720, 723
FspBI CTAG 2 cut(s) 845, 856
GlaI GCGC 3 cut(s) 37, 531, 653
GluI GCNGC 3 cut(s) 528, 720, 723
HaeII RGCGCY 1 cut(s) 533
HaeIII GGCC 1 cut(s) 509
HapII CCGG 1 cut(s) 482
HhaI GCGC 3 cut(s) 38, 532, 654
Hin1II CATG 7 cut(s) 128, 134, 173, 197, 288, 440, 471
Hin6I GCGC 3 cut(s) 36, 530, 652
HinP1I GCGC 3 cut(s) 36, 530, 652
HinfI GANTC 4 cut(s) 453, 557, 607, 621
HpaII CCGG 1 cut(s) 482
HphI GGTGA 2 cut(s) 471, 550
Hpy188I TCNGA 5 cut(s) 52, 158, 620, 643, 694
Hpy188III TCNNGA 5 cut(s) 131, 170, 437, 554, 743
HpyAV CCTTC 1 cut(s) 334
HpyCH4III ACNGT 2 cut(s) 490, 615
HpyCH4IV ACGT 2 cut(s) 73, 388
HpyCH4V TGCA 3 cut(s) 302, 584, 689
HpyF10VI GCNNNNNNNGC 1 cut(s) 491
HpyF3I CTNAG 1 cut(s) 631
HpySE526I ACGT 2 cut(s) 73, 388
Hsp92II CATG 7 cut(s) 128, 134, 173, 197, 288, 440, 471
HspAI GCGC 3 cut(s) 36, 530, 652
Ksp22I TGATCA 2 cut(s) 127, 550
Kzo9I GATC 8 cut(s) 127, 181, 190, 424, 517, 550, 673, 807
LpnPI CCDG 8 cut(s) 109, 137, 339, 495, 612, 644, 671, 761
Lsp1109I GCAGC 2 cut(s) 539, 734
LweI GCATC 3 cut(s) 311, 698, 706
MaeI CTAG 2 cut(s) 845, 856
MaeII ACGT 2 cut(s) 73, 388
MalI GATC 8 cut(s) 129, 183, 192, 426, 519, 552, 675, 809
MboI GATC 8 cut(s) 127, 181, 190, 424, 517, 550, 673, 807
MboII GAAGA 1 cut(s) 220
MhlI GDGCHC 1 cut(s) 223
MlyI GAGTC 2 cut(s) 447, 601
MmeI TCCRAC 2 cut(s) 647, 717
MslI CAYNNNNRTG 2 cut(s) 129, 174
MspA1I CMGCKG 1 cut(s) 725
MspI CCGG 1 cut(s) 482
MspR9I CCNGG 1 cut(s) 659
MvaI CCWGG 1 cut(s) 659
MvnI CGCG 1 cut(s) 652
MwoI GCNNNNNNNGC 1 cut(s) 491
NdeII GATC 8 cut(s) 127, 181, 190, 424, 517, 550, 673, 807
NlaIII CATG 7 cut(s) 128, 134, 173, 197, 288, 440, 471
PagI TCATGA 3 cut(s) 130, 169, 436
PfeI GAWTC 2 cut(s) 557, 621
PkrI GCNGC 3 cut(s) 529, 721, 724
PleI GAGTC 2 cut(s) 447, 601
PpsI GAGTC 2 cut(s) 447, 601
Ppu21I YACGTR 2 cut(s) 74, 389
Psp124BI GAGCTC 1 cut(s) 223
Psp6I CCWGG 1 cut(s) 657
PspGI CCWGG 1 cut(s) 657
PvuII CAGCTG 1 cut(s) 725
RsaI GTAC 4 cut(s) 123, 204, 345, 547
RsaNI GTAC 4 cut(s) 122, 203, 344, 546
RseI CAYNNNNRTG 2 cut(s) 129, 174
SacI GAGCTC 1 cut(s) 223
SatI GCNGC 3 cut(s) 528, 720, 723
Sau3AI GATC 8 cut(s) 127, 181, 190, 424, 517, 550, 673, 807
ScaI AGTACT 2 cut(s) 204, 547
SchI GAGTC 2 cut(s) 447, 601
ScrFI CCNGG 1 cut(s) 659
SduI GDGCHC 1 cut(s) 223
SfaNI GCATC 3 cut(s) 311, 698, 706
SfcI CTRYAG 1 cut(s) 489
SgrAI CRCCGGYG 1 cut(s) 481
SmiMI CAYNNNNRTG 2 cut(s) 129, 174
SmlI CTYRAG 2 cut(s) 222, 741
SmoI CTYRAG 2 cut(s) 222, 741
SsiI CCGC 2 cut(s) 450, 719
SspI AATATT 1 cut(s) 733
SspMI CTAG 2 cut(s) 845, 856
SstI GAGCTC 1 cut(s) 223
StyD4I CCNGG 1 cut(s) 657
TaaI ACNGT 2 cut(s) 490, 615
TaiI ACGT 2 cut(s) 76, 391
TaqI TCGA 4 cut(s) 217, 311, 423, 610
TatI WGTACW 2 cut(s) 202, 545
TauI GCSGC 1 cut(s) 722
TfiI GAWTC 2 cut(s) 557, 621
TseI GCWGC 2 cut(s) 527, 722
TspDTI ATGAA 2 cut(s) 456, 720
TspGWI ACGGA 1 cut(s) 270
XagI CCTNNNNNAGG 1 cut(s) 105
XapI RAATTY 5 cut(s) 16, 244, 292, 475, 786
XspI CTAG 2 cut(s) 845, 856
ZrmI AGTACT 2 cut(s) 204, 547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.