Rh2AG142400

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000369
Physical Location & Seq
Reverse (-)
13101022 .. 13101351
330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG142400.1

Sequence Viewer

Length: 330 bp
ATGAGTCATGACATTAGTGATTATAAATTGGTCAGCATTCTCAAACATGATGATGACAACATTTTTCGAGCTAAGGTCTTCACCCGAAGTTCAAATTGTTGGAGAGAAGTCAAAAGCCACTGCTGTTCATCACTTGGGGTTGTATACAAAACGTTTTCTTCAATCACCTTGAATGGGGTGCTGTATTCGCATCTGTGGACAAAGAATGATAGATTCCATGTCTTGTCCTTCAACTTCCGCGATGAGGTCTTCCGTGTGATACCATTACCAGAGAGCAGTACTGGTCCAACAGATCTCTGTTCTTGGAAAAATTCATTGGCATTTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

109

Amino Acids

12.61

Weight (kDa)

8.4

Isoelectric Point (pI)

32.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 7 - 103 6.8e-09 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis pycom17g23320
rosa_chinensis RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 24
AccI GTMKAC 1 cut(s) 144
AccII CGCG 1 cut(s) 240
AciI CCGC 1 cut(s) 238
AclI AACGTT 1 cut(s) 152
AcsI RAATTY 1 cut(s) 310
AfaI GTAC 1 cut(s) 280
AfiI CCNNNNNNNGG 2 cut(s) 174, 244
AgsI TTSAA 4 cut(s) 93, 162, 172, 232
AjuI GAANNNNNNNTTGG 1 cut(s) 299
AluBI AGCT 1 cut(s) 71
AluI AGCT 1 cut(s) 71
ApoI RAATTY 1 cut(s) 310
AspS9I GGNCC 1 cut(s) 284
AsuHPI GGTGA 2 cut(s) 73, 157
AvaII GGWCC 1 cut(s) 284
BbsI GAAGAC 2 cut(s) 70, 241
BglII AGATCT 1 cut(s) 292
BmcAI AGTACT 1 cut(s) 280
Bme18I GGWCC 1 cut(s) 284
BmgT120I GGNCC 1 cut(s) 284
BmsI GCATC 1 cut(s) 199
BpiI GAAGAC 2 cut(s) 70, 241
Bpu10I CCTNAGC 1 cut(s) 72
Bsc4I CCNNNNNNNGG 2 cut(s) 174, 244
Bse1I ACTGG 1 cut(s) 286
BseLI CCNNNNNNNGG 2 cut(s) 174, 244
BseNI ACTGG 1 cut(s) 286
Bsh1236I CGCG 1 cut(s) 240
BslI CCNNNNNNNGG 2 cut(s) 174, 244
BsmI GAATGC 1 cut(s) 36
Bsp143I GATC 1 cut(s) 292
BspACI CCGC 1 cut(s) 238
BspFNI CGCG 1 cut(s) 240
BspHI TCATGA 1 cut(s) 7
BsrI ACTGG 1 cut(s) 286
BssMI GATC 1 cut(s) 292
BssNAI GTATAC 1 cut(s) 145
Bst1107I GTATAC 1 cut(s) 145
BstDEI CTNAG 1 cut(s) 72
BstFNI CGCG 1 cut(s) 240
BstKTI GATC 1 cut(s) 295
BstMBI GATC 1 cut(s) 292
BstMWI GCNNNNNNNGC 1 cut(s) 187
BstUI CGCG 1 cut(s) 240
BstV2I GAAGAC 2 cut(s) 70, 241
BstX2I RGATCY 1 cut(s) 292
BstYI RGATCY 1 cut(s) 292
BstZ17I GTATAC 1 cut(s) 145
BtgZI GCGATG 1 cut(s) 255
BtsI GCAGTG 1 cut(s) 118
BtsIMutI CAGTG 1 cut(s) 118
CciI TCATGA 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 284
Csp6I GTAC 1 cut(s) 279
CviAII CATG 3 cut(s) 8, 47, 218
CviJI RGCY 2 cut(s) 71, 117
CviKI_1 RGCY 2 cut(s) 71, 117
CviQI GTAC 1 cut(s) 279
DdeI CTNAG 1 cut(s) 72
DpnI GATC 1 cut(s) 294
DpnII GATC 1 cut(s) 292
Eco47I GGWCC 1 cut(s) 284
FaeI CATG 3 cut(s) 11, 50, 221
FaiI YATR 7 cut(s) 9, 24, 48, 145, 219, 326, 328
FatI CATG 3 cut(s) 7, 46, 217
FblI GTMKAC 1 cut(s) 144
Hin1II CATG 3 cut(s) 11, 50, 221
HinfI GANTC 2 cut(s) 4, 213
HphI GGTGA 2 cut(s) 73, 157
Hpy166II GTNNAC 2 cut(s) 145, 198
Hpy188III TCNNGA 1 cut(s) 8
Hpy8I GTNNAC 2 cut(s) 145, 198
HpyAV CCTTC 1 cut(s) 238
HpyCH4IV ACGT 1 cut(s) 152
HpyF10VI GCNNNNNNNGC 1 cut(s) 187
HpyF3I CTNAG 1 cut(s) 72
HpySE526I ACGT 1 cut(s) 152
Hsp92II CATG 3 cut(s) 11, 50, 221
Kzo9I GATC 1 cut(s) 292
LpnPI CCDG 2 cut(s) 267, 282
LweI GCATC 1 cut(s) 199
MaeII ACGT 1 cut(s) 152
MalI GATC 1 cut(s) 294
MboI GATC 1 cut(s) 292
MboII GAAGA 3 cut(s) 70, 150, 241
MflI RGATCY 1 cut(s) 292
MluCI AATT 3 cut(s) 26, 94, 310
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 2 cut(s) 80, 311
MnlI CCTC 1 cut(s) 238
MslI CAYNNNNRTG 2 cut(s) 51, 325
Mva1269I GAATGC 1 cut(s) 36
MvnI CGCG 1 cut(s) 240
MwoI GCNNNNNNNGC 1 cut(s) 187
NdeII GATC 1 cut(s) 292
NlaIII CATG 3 cut(s) 11, 50, 221
PagI TCATGA 1 cut(s) 7
PctI GAATGC 1 cut(s) 36
PfeI GAWTC 1 cut(s) 213
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
PsiI TTATAA 1 cut(s) 24
Psp1406I AACGTT 1 cut(s) 152
PspPI GGNCC 1 cut(s) 284
PsuI RGATCY 1 cut(s) 292
RsaI GTAC 1 cut(s) 280
RsaNI GTAC 1 cut(s) 279
RseI CAYNNNNRTG 2 cut(s) 51, 325
Sau3AI GATC 1 cut(s) 292
Sau96I GGNCC 1 cut(s) 284
ScaI AGTACT 1 cut(s) 280
SchI GAGTC 1 cut(s) 13
SetI ASST 5 cut(s) 73, 78, 155, 170, 249
SfaNI GCATC 1 cut(s) 199
SinI GGWCC 1 cut(s) 284
SmiMI CAYNNNNRTG 2 cut(s) 51, 325
Sse9I AATT 3 cut(s) 26, 94, 310
SsiI CCGC 1 cut(s) 238
TaiI ACGT 1 cut(s) 155
TaqI TCGA 1 cut(s) 67
TasI AATT 3 cut(s) 26, 94, 310
TatI WGTACW 1 cut(s) 278
TfiI GAWTC 1 cut(s) 213
TscAI CASTG 1 cut(s) 125
TspDTI ATGAA 2 cut(s) 117, 303
TspGWI ACGGA 1 cut(s) 242
TspRI CASTG 1 cut(s) 125
VpaK11BI GGWCC 1 cut(s) 284
XapI RAATTY 1 cut(s) 310
XmiI GTMKAC 1 cut(s) 144
ZrmI AGTACT 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.