FvH4_6g17580

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000369
Physical Location & Seq
Reverse (-)
11491038 .. 11492118
1081 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g17580.t1

Sequence Viewer

Length: 996 bp
ATGGACACTAGTAGGAGGAAAGTTGTTAAGGTGAACGATAGCAGGACACTAGGTCTACAGGAAGATGTCCTAGAAGAAATTCTTTCAAAACTGCCTGTCAAGTCTCTACTTAGGTTTCGTTGTGTATCGCAAGAGTGGTATGCTCTCACCAAAAGATTCTCTGAAAATAATTCTAAACCACCACTTGGAATCTCATTGCTTCGAGATGAAGAAATAACGGTTTTGAGATTACCTTTCCTCTCCGAGCTTACAAGCCGAAGAGATGTTGGTTTAAGGTTTGTGGGATCTAAGAATGGCCTGGTTTGCTGTGGTGTATTAAAAGGGATTGAAAATAATAAGAATAGAACTACAGAGGGTGAAGAAGATAATGCTCCCGTGTTCCAACACTCAATAGTAGTATGGAACCCAGCAACAGAACAATTTAGGTTTCTTCCCAAACCTAACAATATTATTCCTTTGGATCAGGATGAGGAGGAGGTTATACTATATGTTAAGGACAACTACTGCTCTCTGTCCTCCTTTGCTCTTATAGGTTTCGATTTCGTATATGATCATGACATTACCGAATACAAATTGGTGAGAGTTTTCGATCATGATAGTGATGATCCTGACGACCATGGAGAAGTAGTTACAACTTTTCGGGCTCAGGTCTTCGTCCAAAGCACAAATTCTCGGAGACAAGCCAAGAACGAGTTAGGGTTTCCATCGTGTGAAAATTCCTTAGCATCAACTTCGATTACATTAGATAGGCTACTGTATTGGATAGTAAAGCGAGCAGGGGACGAGTACTGTCTCATGTCATTCAATTTACGTGAGGAGGTTTTCAGTGTGATAGATCATCGACCAATGGATCTACGGAATCAGGACGAATGCTTATTATACTACTCGTGGAGAAATTCACCGGCGATTATAGTACTTGATGATATTTCGGACAATGAGGATGTCAACGCAATGATTTGGGTGATGAGTACTGATCAAGAATCAAAGAGGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

332

Amino Acids

38.2

Weight (kDa)

4.9

Isoelectric Point (pI)

60.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 19 - 53 8.8e-09 F-box domain
FBA_3 PF08268 119 - 327 2.2e-10 F-box associated beta propeller domain
FBA_1 PF07734 129 - 323 4.4e-10 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis pycom17g23320
rosa_chinensis RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 185
AccI GTMKAC 1 cut(s) 55
AclWI GGATC 4 cut(s) 292, 468, 599, 858
AcsI RAATTY 4 cut(s) 78, 667, 715, 895
AfaI GTAC 3 cut(s) 788, 915, 970
AfiI CCNNNNNNNGG 1 cut(s) 185
AgsI TTSAA 3 cut(s) 87, 329, 805
AhdI GACNNNNNGTC 1 cut(s) 51
AhlI ACTAGT 1 cut(s) 8
AjnI CCWGG 1 cut(s) 297
AluBI AGCT 1 cut(s) 247
AluI AGCT 1 cut(s) 247
Alw26I GTCTC 3 cut(s) 108, 670, 797
AlwI GGATC 4 cut(s) 292, 468, 599, 858
AoxI GGCC 1 cut(s) 295
ApoI RAATTY 4 cut(s) 78, 667, 715, 895
Asp700I GAANNNNTTC 1 cut(s) 78
AsuHPI GGTGA 6 cut(s) 43, 139, 368, 589, 891, 973
BanII GRGCYC 1 cut(s) 646
BauI CACGAG 1 cut(s) 886
BbsI GAAGAC 1 cut(s) 643
BccI CCATC 1 cut(s) 712
BcgI CGANNNNNNTGC 2 cut(s) 714, 748
BciT130I CCWGG 1 cut(s) 299
BclI TGATCA 2 cut(s) 550, 973
BcoDI GTCTC 3 cut(s) 108, 670, 797
BcuI ACTAGT 1 cut(s) 8
BfaI CTAG 3 cut(s) 9, 50, 71
BfmI CTRYAG 2 cut(s) 56, 348
BmcAI AGTACT 3 cut(s) 788, 915, 970
Bme1390I CCNGG 1 cut(s) 299
BmeRI GACNNNNNGTC 1 cut(s) 51
BmiI GGNNCC 1 cut(s) 404
BmrFI CCNGG 1 cut(s) 299
BmsI GCATC 1 cut(s) 734
BpiI GAAGAC 1 cut(s) 643
Bpu10I CCTNAGC 2 cut(s) 645, 721
BsaAI YACGTR 1 cut(s) 812
BsaJI CCNNGG 1 cut(s) 616
BsaXI ACNNNNNCTCC 2 cut(s) 612, 642
Bsc4I CCNNNNNNNGG 1 cut(s) 185
Bse118I RCCGGY 1 cut(s) 901
Bse3DI GCAATG 2 cut(s) 194, 957
BseBI CCWGG 1 cut(s) 299
BseDI CCNNGG 1 cut(s) 616
BseGI GGATG 2 cut(s) 472, 946
BseLI CCNNNNNNNGG 1 cut(s) 185
BseMI GCAATG 2 cut(s) 194, 957
BseMII CTCAG 1 cut(s) 659
BseRI GAGGAG 3 cut(s) 485, 488, 830
BseYI CCCAGC 1 cut(s) 406
BshFI GGCC 1 cut(s) 297
BsiSI CCGG 1 cut(s) 902
BslFI GGGAC 1 cut(s) 794
BslI CCNNNNNNNGG 1 cut(s) 185
BsmAI GTCTC 3 cut(s) 108, 670, 797
BsmFI GGGAC 1 cut(s) 794
BsmI GAATGC 1 cut(s) 875
BsnI GGCC 1 cut(s) 297
Bsp1286I GDGCHC 1 cut(s) 646
Bsp143I GATC 8 cut(s) 284, 460, 550, 589, 604, 835, 850, 973
Bsp19I CCATGG 1 cut(s) 616
BspANI GGCC 1 cut(s) 297
BspCNI CTCAG 1 cut(s) 658
BspHI TCATGA 2 cut(s) 553, 592
BspLI GGNNCC 1 cut(s) 404
BspPI GGATC 4 cut(s) 292, 468, 599, 858
BsrDI GCAATG 2 cut(s) 194, 957
BsrFI RCCGGY 1 cut(s) 901
BssAI RCCGGY 1 cut(s) 901
BssECI CCNNGG 1 cut(s) 616
BssMI GATC 8 cut(s) 284, 460, 550, 589, 604, 835, 850, 973
BssSI CACGAG 1 cut(s) 886
BssT1I CCWWGG 1 cut(s) 616
Bst2BI CACGAG 1 cut(s) 886
Bst2UI CCWGG 1 cut(s) 299
Bst4CI ACNGT 3 cut(s) 220, 756, 791
Bst6I CTCTTC 1 cut(s) 253
BstBAI YACGTR 1 cut(s) 812
BstC8I GCNNGC 1 cut(s) 774
BstDEI CTNAG 4 cut(s) 110, 288, 645, 721
BstDSI CCRYGG 1 cut(s) 616
BstF5I GGATG 2 cut(s) 472, 946
BstKTI GATC 8 cut(s) 287, 463, 553, 592, 607, 838, 853, 976
BstMAI GTCTC 3 cut(s) 108, 670, 797
BstMBI GATC 8 cut(s) 284, 460, 550, 589, 604, 835, 850, 973
BstMWI GCNNNNNNNGC 1 cut(s) 303
BstNI CCWGG 1 cut(s) 299
BstSCI CCNGG 1 cut(s) 297
BstSFI CTRYAG 2 cut(s) 56, 348
BstV2I GAAGAC 1 cut(s) 643
BstX2I RGATCY 2 cut(s) 284, 850
BstYI RGATCY 2 cut(s) 284, 850
BsuRI GGCC 1 cut(s) 297
BtgI CCRYGG 1 cut(s) 616
BtsCI GGATG 2 cut(s) 472, 946
BtsIMutI CAGTG 1 cut(s) 832
Cac8I GCNNGC 1 cut(s) 774
CciI TCATGA 2 cut(s) 553, 592
Cfr10I RCCGGY 1 cut(s) 901
Csp6I GTAC 3 cut(s) 787, 914, 969
CviAII CATG 4 cut(s) 554, 593, 617, 796
CviJI RGCY 6 cut(s) 247, 255, 297, 644, 683, 751
CviKI_1 RGCY 6 cut(s) 247, 255, 297, 644, 683, 751
CviQI GTAC 3 cut(s) 787, 914, 969
DdeI CTNAG 4 cut(s) 110, 288, 645, 721
DpnI GATC 8 cut(s) 286, 462, 552, 591, 606, 837, 852, 975
DpnII GATC 8 cut(s) 284, 460, 550, 589, 604, 835, 850, 973
DriI GACNNNNNGTC 1 cut(s) 51
Eam1104I CTCTTC 1 cut(s) 253
Eam1105I GACNNNNNGTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 253
Eco130I CCWWGG 1 cut(s) 616
Eco24I GRGCYC 1 cut(s) 646
EcoRII CCWGG 1 cut(s) 297
EcoT14I CCWWGG 1 cut(s) 616
EcoT38I GRGCYC 1 cut(s) 646
ErhI CCWWGG 1 cut(s) 616
FaeI CATG 4 cut(s) 557, 596, 620, 799
FalI AAGNNNNNCTT 2 cut(s) 66, 98
FaqI GGGAC 1 cut(s) 794
FatI CATG 4 cut(s) 553, 592, 616, 795
FbaI TGATCA 2 cut(s) 550, 973
FblI GTMKAC 1 cut(s) 55
FokI GGATG 2 cut(s) 479, 953
FriOI GRGCYC 1 cut(s) 646
FspBI CTAG 3 cut(s) 9, 50, 71
GsaI CCCAGC 1 cut(s) 410
HaeIII GGCC 1 cut(s) 297
HapII CCGG 1 cut(s) 902
Hin1II CATG 4 cut(s) 557, 596, 620, 799
HincII GTYRAC 1 cut(s) 946
HindII GTYRAC 1 cut(s) 946
HinfI GANTC 4 cut(s) 156, 189, 859, 980
HpaII CCGG 1 cut(s) 902
HphI GGTGA 6 cut(s) 43, 139, 368, 589, 891, 973
Hpy166II GTNNAC 3 cut(s) 34, 56, 946
Hpy188I TCNGA 4 cut(s) 163, 244, 675, 931
Hpy188III TCNNGA 7 cut(s) 203, 464, 554, 593, 608, 863, 977
Hpy8I GTNNAC 3 cut(s) 34, 56, 946
HpyCH4III ACNGT 3 cut(s) 220, 756, 791
HpyCH4IV ACGT 1 cut(s) 811
HpyF10VI GCNNNNNNNGC 1 cut(s) 303
HpyF3I CTNAG 4 cut(s) 110, 288, 645, 721
HpySE526I ACGT 1 cut(s) 811
Hsp92II CATG 4 cut(s) 557, 596, 620, 799
Ksp22I TGATCA 2 cut(s) 550, 973
Kzo9I GATC 8 cut(s) 284, 460, 550, 589, 604, 835, 850, 973
LmnI GCTCC 1 cut(s) 376
LweI GCATC 1 cut(s) 734
MaeI CTAG 3 cut(s) 9, 50, 71
MaeII ACGT 1 cut(s) 811
MaeIII GTNAC 1 cut(s) 628
MalI GATC 8 cut(s) 286, 462, 552, 591, 606, 837, 852, 975
MboI GATC 8 cut(s) 284, 460, 550, 589, 604, 835, 850, 973
MboII GAAGA 8 cut(s) 74, 86, 221, 270, 371, 374, 422, 643
MflI RGATCY 2 cut(s) 284, 850
MhlI GDGCHC 1 cut(s) 646
MluCI AATT 8 cut(s) 78, 169, 419, 572, 667, 715, 805, 895
MmeI TCCRAC 1 cut(s) 406
MroXI GAANNNNTTC 1 cut(s) 78
MseI TTAA 4 cut(s) 27, 272, 317, 492
MslI CAYNNNNRTG 1 cut(s) 597
MspI CCGG 1 cut(s) 902
MspR9I CCNGG 1 cut(s) 299
Mva1269I GAATGC 1 cut(s) 875
MvaI CCWGG 1 cut(s) 299
MwoI GCNNNNNNNGC 1 cut(s) 303
NcoI CCATGG 1 cut(s) 616
NdeII GATC 8 cut(s) 284, 460, 550, 589, 604, 835, 850, 973
NlaIII CATG 4 cut(s) 557, 596, 620, 799
NlaIV GGNNCC 1 cut(s) 404
PagI TCATGA 2 cut(s) 553, 592
PctI GAATGC 1 cut(s) 875
PdmI GAANNNNTTC 1 cut(s) 78
PfeI GAWTC 4 cut(s) 156, 189, 859, 980
PflMI CCANNNNNTGG 1 cut(s) 185
Ppu21I YACGTR 1 cut(s) 812
Psp6I CCWGG 1 cut(s) 297
PspFI CCCAGC 1 cut(s) 406
PspGI CCWGG 1 cut(s) 297
PspN4I GGNNCC 1 cut(s) 404
PsuI RGATCY 2 cut(s) 284, 850
RsaI GTAC 3 cut(s) 788, 915, 970
RsaNI GTAC 3 cut(s) 787, 914, 969
RseI CAYNNNNRTG 1 cut(s) 597
SaqAI TTAA 4 cut(s) 27, 272, 317, 492
Sau3AI GATC 8 cut(s) 284, 460, 550, 589, 604, 835, 850, 973
ScaI AGTACT 3 cut(s) 788, 915, 970
ScrFI CCNGG 1 cut(s) 299
SduI GDGCHC 1 cut(s) 646
SfaNI GCATC 1 cut(s) 734
SfcI CTRYAG 2 cut(s) 56, 348
SgrAI CRCCGGYG 1 cut(s) 901
SmiMI CAYNNNNRTG 1 cut(s) 597
SpeI ACTAGT 1 cut(s) 8
Sse9I AATT 8 cut(s) 78, 169, 419, 572, 667, 715, 805, 895
SspI AATATT 1 cut(s) 448
SspMI CTAG 3 cut(s) 9, 50, 71
StyD4I CCNGG 1 cut(s) 297
StyI CCWWGG 1 cut(s) 616
TaaI ACNGT 3 cut(s) 220, 756, 791
TaiI ACGT 1 cut(s) 814
TaqI TCGA 5 cut(s) 202, 537, 588, 734, 841
TasI AATT 8 cut(s) 78, 169, 419, 572, 667, 715, 805, 895
TatI WGTACW 3 cut(s) 786, 913, 968
TfiI GAWTC 4 cut(s) 156, 189, 859, 980
Tru1I TTAA 4 cut(s) 27, 272, 317, 492
Tru9I TTAA 4 cut(s) 27, 272, 317, 492
TscAI CASTG 1 cut(s) 832
TspDTI ATGAA 1 cut(s) 222
TspGWI ACGGA 1 cut(s) 871
TspRI CASTG 1 cut(s) 832
Van91I CCANNNNNTGG 1 cut(s) 185
XapI RAATTY 4 cut(s) 78, 667, 715, 895
XmiI GTMKAC 1 cut(s) 55
XmnI GAANNNNTTC 1 cut(s) 78
XspI CTAG 3 cut(s) 9, 50, 71
ZrmI AGTACT 3 cut(s) 788, 915, 970
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.