Rorug02G0095300

F-Box protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
7799164 .. 7803196
4033 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0095300.1

Sequence Viewer

Length: 1263 bp
ATGCAACAGCAGCAGCAGAGGCTTAAACAACAACAGCAGCAGCAGCAGCAAGCCATGATGCAGCAGTCGCTTTACCAGCACCCTGCTCTCTTAGCCCCGCCTCAGATAGAGCCTATCTTGAGTGGAAATCTGCCTCCTGGGTTTGATTCAAGTACATGCCGCAGTGTGTATGTTGGAAATATTCATCCCCAGGTTACTGATACCCTTCTTCAAGAAGTTTTTGCCAGTACTGGCCCACTTGAGGGATGCAAGCTCATAAGGAAAGATAAGTCATCCTATGGATTTGTTGATTACTATGATCGCCGATCAGCTGCCCTTGCTATTGTTTCTCTCAACGGCAGGCATCTGTTTGGACAGCCAATTAAAGTTAATTGGGCCTATCAAAGTAGTCAGAGGGAGGATACTTCAGGTCATTTTAATATTTTTGTTGGTGATCTTAGCGCTGAGGTTACCGATGCTACATTGTTTGCATGCTTTTCTGTTTACCCCAGTTGTTCAGATGCAAGGGTTATGTGGGATCCAAAAAGTGGGCGCTCAAGGGGCTTTGGGTTTGTTTCATTCCGGAATCAGCAGGATGCCCAAAGTGCCATAAATGACTTAAATGGAAAGTGGCTTGCAAGTAGACAAATTCGGTGCAACTGGGCTACAAAAGGTGCTGCTTCAAATGATGATAAACAGAGTTCTGATTCTAAAAGTGTGGTAGAGCTGACAAATGGAACATCAGAAGATGGTCAGGAGAAGCCTAATGAAGATGCTCCAGAGAACAATCCTCAGTATACCACAGTTTATGTTGGCAATCTGGCTCCTGAGGTTACTCAAGCTGAACTCCATCGTCATTTCCATGCCCTTGGTGCTGGAACTATAGAAGATGTTAGGGTGCAACGAGATAAAGGTTTTGGGTTTGTGAGATACAGTACACATTCTGAAGCAGCCGCAGCTATCCAGATGGGGAATGCTAGGTTTCTCTGTGGAAAACCAATAAAGTGTTCATGGGGTAGCAAGCCTACTCCACCAGGAACCACCTCCAGCCCTCTTGCTCCACCAGCTGCAGCTTATATGCCAGGTTTTTCAGCCACTGACCTTGCGGCATATGAACGACAAATGGCATATAGTAAAATGGGTGGTCCACAAGCCCTCATGCTTCCCCAGGGTCAGCATGGTATGAAGGCACCCATGGGAATGGGTGCTGGAACTAGTCAGGCGATATATGACGGTGGCTACCAGAATGTAGCAACATCCCAGCAGCTCATGTACTACCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

420

Amino Acids

45.97

Weight (kDa)

7.1

Isoelectric Point (pI)

48.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 56 - 122 1.6e-12 RNA recognition motif
RRM_1 PF00076 141 - 211 8.5e-17 RNA recognition motif
RRM_1 PF00076 262 - 328 6.5e-14 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis pycom17g23320
rosa_chinensis RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1168
AccB7I CCANNNNNTGG 1 cut(s) 527
AccI GTMKAC 2 cut(s) 622, 776
AccIII TCCGGA 1 cut(s) 561
AciI CCGC 4 cut(s) 98, 160, 933, 1085
AclWI GGATC 2 cut(s) 512, 525
AcsI RAATTY 1 cut(s) 627
AcuI CTGAAG 2 cut(s) 390, 945
AfaI GTAC 4 cut(s) 154, 229, 916, 1253
AfeI AGCGCT 1 cut(s) 442
AfiI CCNNNNNNNGG 3 cut(s) 241, 242, 527
AgsI TTSAA 3 cut(s) 150, 212, 663
AhlI ACTAGT 1 cut(s) 1193
AjnI CCWGG 5 cut(s) 136, 189, 1012, 1060, 1146
AjuI GAANNNNNNNTTGG 2 cut(s) 970, 1002
AluBI AGCT 8 cut(s) 253, 311, 706, 821, 938, 1046, 1052, 1246
AluI AGCT 8 cut(s) 253, 311, 706, 821, 938, 1046, 1052, 1246
AlwI GGATC 2 cut(s) 512, 525
AlwNI CAGNNNCTG 1 cut(s) 1076
Aor13HI TCCGGA 1 cut(s) 561
Aor51HI AGCGCT 1 cut(s) 442
AoxI GGCC 2 cut(s) 232, 375
ApoI RAATTY 1 cut(s) 627
AspLEI GCGC 2 cut(s) 443, 534
AspS9I GGNCC 3 cut(s) 233, 375, 1124
AsuHPI GGTGA 1 cut(s) 443
AvaII GGWCC 1 cut(s) 1124
AxyI CCTNAGG 1 cut(s) 807
BamHI GGATCC 1 cut(s) 517
BanI GGYRCC 1 cut(s) 1168
BbvCI CCTCAGC 1 cut(s) 444
BccI CCATC 3 cut(s) 722, 837, 940
BceAI ACGGC 1 cut(s) 352
BciT130I CCWGG 5 cut(s) 138, 191, 1014, 1062, 1148
BciVI GTATCC 1 cut(s) 394
BcuI ACTAGT 1 cut(s) 1193
BfaI CTAG 2 cut(s) 957, 1194
BfmI CTRYAG 2 cut(s) 861, 1047
BfoI RGCGCY 2 cut(s) 444, 535
BfuI GTATCC 1 cut(s) 394
BmcAI AGTACT 1 cut(s) 229
Bme1390I CCNGG 5 cut(s) 138, 191, 1014, 1062, 1148
Bme18I GGWCC 1 cut(s) 1124
BmgT120I GGNCC 3 cut(s) 233, 375, 1124
BmiI GGNNCC 4 cut(s) 519, 804, 1018, 1170
BmrFI CCNGG 5 cut(s) 138, 191, 1014, 1062, 1148
BmrI ACTGGG 2 cut(s) 483, 649
BmsI GCATC 7 cut(s) 48, 236, 352, 445, 490, 565, 742
BmuI ACTGGG 2 cut(s) 483, 649
BpmI CTGGAG 2 cut(s) 741, 1009
Bpu10I CCTNAGC 1 cut(s) 444
BpuEI CTTGAG 4 cut(s) 139, 260, 520, 801
BsaJI CCNNGG 6 cut(s) 137, 189, 847, 1146, 1147, 1173
BsaWI WCCGGW 1 cut(s) 561
Bsc4I CCNNNNNNNGG 3 cut(s) 241, 242, 527
Bse1I ACTGG 5 cut(s) 225, 235, 489, 644, 1258
Bse21I CCTNAGG 1 cut(s) 807
BseAI TCCGGA 1 cut(s) 561
BseBI CCWGG 5 cut(s) 138, 191, 1014, 1062, 1148
BseDI CCNNGG 6 cut(s) 137, 189, 847, 1146, 1147, 1173
BseGI GGATG 5 cut(s) 184, 251, 272, 580, 1235
BseLI CCNNNNNNNGG 3 cut(s) 241, 242, 527
BseMII CTCAG 4 cut(s) 116, 435, 785, 798
BseNI ACTGG 5 cut(s) 225, 235, 489, 644, 1258
BseYI CCCAGC 1 cut(s) 1239
BshFI GGCC 2 cut(s) 234, 377
BshNI GGYRCC 1 cut(s) 1168
BsiSI CCGG 1 cut(s) 562
BslI CCNNNNNNNGG 3 cut(s) 241, 242, 527
BsmI GAATGC 1 cut(s) 958
BsnI GGCC 2 cut(s) 234, 377
Bsp13I TCCGGA 1 cut(s) 561
Bsp143I GATC 4 cut(s) 298, 305, 433, 517
Bsp19I CCATGG 1 cut(s) 1173
BspACI CCGC 4 cut(s) 98, 160, 933, 1085
BspANI GGCC 2 cut(s) 234, 377
BspCNI CTCAG 4 cut(s) 115, 436, 784, 799
BspEI TCCGGA 1 cut(s) 561
BspLI GGNNCC 4 cut(s) 519, 804, 1018, 1170
BspMAI CTGCAG 1 cut(s) 1051
BspPI GGATC 2 cut(s) 512, 525
BspT107I GGYRCC 1 cut(s) 1168
BsrI ACTGG 5 cut(s) 225, 235, 489, 644, 1258
BssECI CCNNGG 6 cut(s) 137, 189, 847, 1146, 1147, 1173
BssMI GATC 4 cut(s) 298, 305, 433, 517
BssNAI GTATAC 1 cut(s) 777
BssT1I CCWWGG 2 cut(s) 847, 1173
Bst1107I GTATAC 1 cut(s) 777
Bst2UI CCWGG 5 cut(s) 138, 191, 1014, 1062, 1148
Bst4CI ACNGT 3 cut(s) 784, 914, 1214
BstC8I GCNNGC 6 cut(s) 51, 251, 341, 472, 615, 1001
BstDEI CTNAG 6 cut(s) 91, 102, 437, 444, 771, 807
BstDSI CCRYGG 1 cut(s) 1173
BstEII GGTNACC 1 cut(s) 448
BstF5I GGATG 5 cut(s) 184, 251, 272, 580, 1235
BstH2I RGCGCY 2 cut(s) 444, 535
BstHHI GCGC 2 cut(s) 443, 534
BstKTI GATC 4 cut(s) 301, 308, 436, 520
BstMBI GATC 4 cut(s) 298, 305, 433, 517
BstNI CCWGG 5 cut(s) 138, 191, 1014, 1062, 1148
BstNSI RCATGY 2 cut(s) 159, 474
BstPI GGTNACC 1 cut(s) 448
BstSCI CCNGG 5 cut(s) 136, 189, 1012, 1060, 1146
BstSFI CTRYAG 2 cut(s) 861, 1047
BstX2I RGATCY 1 cut(s) 517
BstXI CCANNNNNNTGG 2 cut(s) 848, 1180
BstYI RGATCY 1 cut(s) 517
BstZ17I GTATAC 1 cut(s) 777
Bsu36I CCTNAGG 1 cut(s) 807
BsuI GTATCC 1 cut(s) 394
BsuRI GGCC 2 cut(s) 234, 377
BtgI CCRYGG 1 cut(s) 1173
BtsCI GGATG 5 cut(s) 184, 251, 272, 580, 1235
BtsI GCAGTG 1 cut(s) 169
BtsIMutI CAGTG 2 cut(s) 169, 1074
Cac8I GCNNGC 6 cut(s) 51, 251, 341, 472, 615, 1001
CaiI CAGNNNCTG 1 cut(s) 1076
CfoI GCGC 2 cut(s) 443, 534
Cfr13I GGNCC 3 cut(s) 233, 375, 1124
Csp6I GTAC 4 cut(s) 153, 228, 915, 1252
CspCI CAANNNNNGTGG 2 cut(s) 1063, 1098
CviAII CATG 9 cut(s) 55, 156, 471, 842, 990, 1138, 1157, 1174, 1249
CviQI GTAC 4 cut(s) 153, 228, 915, 1252
DdeI CTNAG 6 cut(s) 91, 102, 437, 444, 771, 807
DpnI GATC 4 cut(s) 300, 307, 435, 519
DpnII GATC 4 cut(s) 298, 305, 433, 517
Eco130I CCWWGG 2 cut(s) 847, 1173
Eco47I GGWCC 1 cut(s) 1124
Eco47III AGCGCT 1 cut(s) 442
Eco57I CTGAAG 2 cut(s) 390, 945
Eco81I CCTNAGG 1 cut(s) 807
Eco91I GGTNACC 1 cut(s) 448
EcoO65I GGTNACC 1 cut(s) 448
EcoRII CCWGG 5 cut(s) 136, 189, 1012, 1060, 1146
EcoT14I CCWWGG 2 cut(s) 847, 1173
ErhI CCWWGG 2 cut(s) 847, 1173
FaeI CATG 9 cut(s) 58, 159, 474, 845, 993, 1141, 1160, 1177, 1252
FatI CATG 9 cut(s) 54, 155, 470, 841, 989, 1137, 1156, 1173, 1248
FauI CCCGC 1 cut(s) 105
FauNDI CATATG 1 cut(s) 1090
FblI GTMKAC 2 cut(s) 622, 776
FokI GGATG 5 cut(s) 171, 258, 259, 587, 1222
FspBI CTAG 2 cut(s) 957, 1194
GlaI GCGC 2 cut(s) 442, 533
GsaI CCCAGC 1 cut(s) 1243
GsuI CTGGAG 2 cut(s) 741, 1009
HaeII RGCGCY 2 cut(s) 444, 535
HaeIII GGCC 2 cut(s) 234, 377
HapII CCGG 1 cut(s) 562
HhaI GCGC 2 cut(s) 443, 534
Hin1II CATG 9 cut(s) 58, 159, 474, 845, 993, 1141, 1160, 1177, 1252
Hin6I GCGC 2 cut(s) 441, 532
HinP1I GCGC 2 cut(s) 441, 532
HinfI GANTC 3 cut(s) 146, 565, 686
HpaII CCGG 1 cut(s) 562
HphI GGTGA 1 cut(s) 443
Hpy166II GTNNAC 5 cut(s) 484, 623, 777, 917, 1127
Hpy188I TCNGA 6 cut(s) 105, 393, 499, 685, 724, 925
Hpy188III TCNNGA 7 cut(s) 118, 212, 562, 734, 758, 806, 943
Hpy8I GTNNAC 5 cut(s) 484, 623, 777, 917, 1127
HpyAV CCTTC 2 cut(s) 215, 1159
HpyCH4III ACNGT 3 cut(s) 784, 914, 1214
HpyCH4V TGCA 9 cut(s) 4, 61, 249, 470, 503, 617, 636, 880, 1049
HpyF3I CTNAG 6 cut(s) 91, 102, 437, 444, 771, 807
Hsp92II CATG 9 cut(s) 58, 159, 474, 845, 993, 1141, 1160, 1177, 1252
HspAI GCGC 2 cut(s) 441, 532
Kpn2I TCCGGA 1 cut(s) 561
Kzo9I GATC 4 cut(s) 298, 305, 433, 517
LmnI GCTCC 3 cut(s) 760, 808, 1042
LweI GCATC 7 cut(s) 48, 236, 352, 445, 490, 565, 742
MaeI CTAG 2 cut(s) 957, 1194
MaeIII GTNAC 3 cut(s) 193, 448, 811
MalI GATC 4 cut(s) 300, 307, 435, 519
MboI GATC 4 cut(s) 298, 305, 433, 517
MboII GAAGA 4 cut(s) 200, 737, 761, 878
MflI RGATCY 1 cut(s) 517
MluCI AATT 3 cut(s) 360, 370, 627
MmeI TCCRAC 1 cut(s) 154
MroI TCCGGA 1 cut(s) 561
MseI TTAA 5 cut(s) 24, 363, 369, 417, 599
MslI CAYNNNNRTG 2 cut(s) 840, 1178
MspA1I CMGCKG 2 cut(s) 311, 1046
MspI CCGG 1 cut(s) 562
MspR9I CCNGG 5 cut(s) 138, 191, 1014, 1062, 1148
Mva1269I GAATGC 1 cut(s) 958
MvaI CCWGG 5 cut(s) 138, 191, 1014, 1062, 1148
NcoI CCATGG 1 cut(s) 1173
NdeI CATATG 1 cut(s) 1090
NdeII GATC 4 cut(s) 298, 305, 433, 517
NlaIII CATG 9 cut(s) 58, 159, 474, 845, 993, 1141, 1160, 1177, 1252
NlaIV GGNNCC 4 cut(s) 519, 804, 1018, 1170
NspI RCATGY 2 cut(s) 159, 474
PaeI GCATGC 1 cut(s) 474
PasI CCCWGGG 1 cut(s) 1147
PctI GAATGC 1 cut(s) 958
PfeI GAWTC 3 cut(s) 146, 565, 686
PflMI CCANNNNNTGG 1 cut(s) 527
Psp6I CCWGG 5 cut(s) 136, 189, 1012, 1060, 1146
PspEI GGTNACC 1 cut(s) 448
PspFI CCCAGC 1 cut(s) 1239
PspGI CCWGG 5 cut(s) 136, 189, 1012, 1060, 1146
PspN4I GGNNCC 4 cut(s) 519, 804, 1018, 1170
PspPI GGNCC 3 cut(s) 233, 375, 1124
PstI CTGCAG 1 cut(s) 1051
PstNI CAGNNNCTG 1 cut(s) 1076
PsuI RGATCY 1 cut(s) 517
PvuII CAGCTG 2 cut(s) 311, 1046
RsaI GTAC 4 cut(s) 154, 229, 916, 1253
RsaNI GTAC 4 cut(s) 153, 228, 915, 1252
RseI CAYNNNNRTG 2 cut(s) 840, 1178
SaqAI TTAA 5 cut(s) 24, 363, 369, 417, 599
Sau3AI GATC 4 cut(s) 298, 305, 433, 517
Sau96I GGNCC 3 cut(s) 233, 375, 1124
ScaI AGTACT 1 cut(s) 229
ScrFI CCNGG 5 cut(s) 138, 191, 1014, 1062, 1148
SfaNI GCATC 7 cut(s) 48, 236, 352, 445, 490, 565, 742
SfcI CTRYAG 2 cut(s) 861, 1047
SinI GGWCC 1 cut(s) 1124
SmiMI CAYNNNNRTG 2 cut(s) 840, 1178
SmlI CTYRAG 4 cut(s) 118, 239, 535, 816
SmoI CTYRAG 4 cut(s) 118, 239, 535, 816
SpeI ACTAGT 1 cut(s) 1193
SphI GCATGC 1 cut(s) 474
Sse9I AATT 3 cut(s) 360, 370, 627
SsiI CCGC 4 cut(s) 98, 160, 933, 1085
SspI AATATT 2 cut(s) 181, 421
SspMI CTAG 2 cut(s) 957, 1194
StyD4I CCNGG 5 cut(s) 136, 189, 1012, 1060, 1146
StyI CCWWGG 2 cut(s) 847, 1173
TaaI ACNGT 3 cut(s) 784, 914, 1214
TasI AATT 3 cut(s) 360, 370, 627
TatI WGTACW 4 cut(s) 152, 227, 914, 1251
TauI GCSGC 3 cut(s) 162, 935, 1088
TfiI GAWTC 3 cut(s) 146, 565, 686
Tru1I TTAA 5 cut(s) 24, 363, 369, 417, 599
Tru9I TTAA 5 cut(s) 24, 363, 369, 417, 599
TscAI CASTG 2 cut(s) 169, 1081
TspDTI ATGAA 6 cut(s) 173, 546, 762, 978, 1107, 1178
TspRI CASTG 2 cut(s) 169, 1081
Van91I CCANNNNNTGG 1 cut(s) 527
VpaK11BI GGWCC 1 cut(s) 1124
XapI RAATTY 1 cut(s) 627
XceI RCATGY 2 cut(s) 159, 474
XcmI CCANNNNNNNNNTGG 1 cut(s) 1154
XmiI GTMKAC 2 cut(s) 622, 776
XspI CTAG 2 cut(s) 957, 1194
ZrmI AGTACT 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.