FvH4_1g13711

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000369
Physical Location & Seq
Forward (+)
7558396 .. 7561497
3102 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g13711.t1

Sequence Viewer

Length: 957 bp
ATGGGAATCAGAAGAAGCAAAGAAAAGGTAAGCAATAGTACTTTGCCGGAAGATGTTGTAGAAAAGCCACACAAAAAACCAGGTGTCTTCCTGCACTCCCTCCTCCCTGTAGACAATTTCACAGTAGGTTTCGAGTTCATTGATGAAATTAGCGATTACAAATTGGCGACTATTTATACAACTTATGATAGGCCTGACAAAGTTGTTTTTAAGGCCCTAGTCTTTACCAGAAGTACAGATTTTTGGAGAGAAGTCGAAAGCTTTTCATATAGTAACCCTGGAGTTTATTGTTTTGGAATGCGGCCTTATAATTATACCTTGAATGGGGTGCTATACATTTCGAACTTCACAATAAACAACAGTGGTGGTTATCTTCTGTCATTTGATTTGAGGGACGAGGTCTTCAACGATCAGTCTTCTTCTACCAAAAACATGCCTTGGACAAAACAGTTCATATTTGATGAAACCCAGCCGGGAATATGTTCAGGAGCTTGGAAGGATGAATTTATTTTCAAGAGAAGACTTGAAGATGGTCATCACCAGTTTTTGTACGATCCTACGAGCCAAAAGGTTCATAGGCTCTCTCTCAAGCTTCTTATGGGAATCGAAGCAAGAGCTGCAACCACTGTCAACCATGAAAACAGAGCCAAGTCTGCAAGAAAGCTAACATCATACCTAGATTACTCCTGGCCTAGCCGTCGTGATAGCTTATTCAAGTATTCACTGGCATTTCTAGCACATCGTGAACCAAACTATGAAGACTATGCGGTTACTGAGCTTTGGGTGATGAATCATGAGGAGGGTTCTTCTGCTACTTGGATTAAAGAATTTACATGCGAAACCCTATCGCTACCAGGACAGTGCATTGGTACTTGGAATGAAGAACTTTTTTTCAAGAGAGAAAATCGAGCAGACGGTGACGACCTTTTTCTATACAACCCTAAGAGCCAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

319

Amino Acids

37.06

Weight (kDa)

6.1

Isoelectric Point (pI)

32.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis pycom17g23320
rosa_chinensis RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 309
AccI GTMKAC 1 cut(s) 111
AciI CCGC 2 cut(s) 301, 767
AclWI GGATC 1 cut(s) 548
AcsI RAATTY 2 cut(s) 503, 827
AdeI CACNNNGTG 1 cut(s) 743
AfaI GTAC 4 cut(s) 40, 235, 551, 871
AfiI CCNNNNNNNGG 1 cut(s) 324
AgsI TTSAA 6 cut(s) 322, 406, 514, 527, 715, 895
AjnI CCWGG 4 cut(s) 79, 277, 686, 853
AluBI AGCT 7 cut(s) 261, 491, 592, 617, 664, 708, 778
AluI AGCT 7 cut(s) 261, 491, 592, 617, 664, 708, 778
AlwI GGATC 1 cut(s) 548
AoxI GGCC 4 cut(s) 191, 213, 302, 689
ApeKI GCWGC 1 cut(s) 617
ApoI RAATTY 2 cut(s) 503, 827
Asp700I GAANNNNTTC 1 cut(s) 481
AspS9I GGNCC 1 cut(s) 214
AsuC2I CCSGG 1 cut(s) 474
AsuHPI GGTGA 3 cut(s) 530, 796, 929
AsuII TTCGAA 1 cut(s) 341
BbsI GAAGAC 5 cut(s) 79, 394, 408, 526, 765
BbvI GCAGC 1 cut(s) 604
BccI CCATC 1 cut(s) 524
BceAI ACGGC 1 cut(s) 681
BciT130I CCWGG 4 cut(s) 81, 279, 688, 855
BcnI CCSGG 1 cut(s) 474
BfaI CTAG 4 cut(s) 218, 677, 693, 734
BfmI CTRYAG 1 cut(s) 108
BisI GCNGC 2 cut(s) 302, 618
BlsI GCNGC 2 cut(s) 303, 619
BmcAI AGTACT 1 cut(s) 40
Bme1390I CCNGG 5 cut(s) 81, 279, 474, 688, 855
BmgT120I GGNCC 1 cut(s) 214
BmrFI CCNGG 5 cut(s) 81, 279, 474, 688, 855
BpiI GAAGAC 5 cut(s) 79, 394, 408, 526, 765
BpmI CTGGAG 1 cut(s) 300
Bpu14I TTCGAA 1 cut(s) 341
BpuEI CTTGAG 1 cut(s) 572
BpuMI CCSGG 1 cut(s) 474
BsaBI GATNNNNATC 1 cut(s) 534
BsaJI CCNNGG 2 cut(s) 277, 437
Bsc4I CCNNNNNNNGG 1 cut(s) 324
Bse1I ACTGG 2 cut(s) 541, 729
Bse8I GATNNNNATC 1 cut(s) 534
BseBI CCWGG 4 cut(s) 81, 279, 688, 855
BseDI CCNNGG 2 cut(s) 277, 437
BseGI GGATG 1 cut(s) 505
BseJI GATNNNNATC 1 cut(s) 534
BseLI CCNNNNNNNGG 1 cut(s) 324
BseMII CTCAG 1 cut(s) 765
BseNI ACTGG 2 cut(s) 541, 729
BseRI GAGGAG 2 cut(s) 92, 812
BseXI GCAGC 1 cut(s) 604
BseYI CCCAGC 1 cut(s) 468
BsgI GTGCAG 1 cut(s) 77
BshFI GGCC 4 cut(s) 193, 215, 304, 691
BsiSI CCGG 2 cut(s) 47, 473
BslFI GGGAC 1 cut(s) 407
BslI CCNNNNNNNGG 1 cut(s) 324
BsmFI GGGAC 1 cut(s) 407
BsmI GAATGC 1 cut(s) 303
BsnI GGCC 4 cut(s) 193, 215, 304, 691
Bsp119I TTCGAA 1 cut(s) 341
Bsp143I GATC 2 cut(s) 409, 553
BspACI CCGC 2 cut(s) 301, 767
BspANI GGCC 4 cut(s) 193, 215, 304, 691
BspCNI CTCAG 1 cut(s) 766
BspHI TCATGA 1 cut(s) 793
BspPI GGATC 1 cut(s) 548
BspT104I TTCGAA 1 cut(s) 341
BsrI ACTGG 2 cut(s) 541, 729
BssECI CCNNGG 2 cut(s) 277, 437
BssMI GATC 2 cut(s) 409, 553
BssT1I CCWWGG 1 cut(s) 437
Bst2UI CCWGG 4 cut(s) 81, 279, 688, 855
Bst4CI ACNGT 6 cut(s) 124, 362, 450, 628, 861, 917
BstAPI GCANNNNNTGC 1 cut(s) 617
BstBI TTCGAA 1 cut(s) 341
BstDEI CTNAG 2 cut(s) 774, 942
BstF5I GGATG 1 cut(s) 505
BstKTI GATC 2 cut(s) 412, 556
BstMBI GATC 2 cut(s) 409, 553
BstMWI GCNNNNNNNGC 3 cut(s) 617, 653, 734
BstNI CCWGG 4 cut(s) 81, 279, 688, 855
BstNSI RCATGY 2 cut(s) 436, 837
BstSCI CCNGG 5 cut(s) 79, 277, 472, 686, 853
BstSFI CTRYAG 1 cut(s) 108
BstV1I GCAGC 1 cut(s) 604
BstV2I GAAGAC 5 cut(s) 79, 394, 408, 526, 765
BsuRI GGCC 4 cut(s) 193, 215, 304, 691
BtsCI GGATG 1 cut(s) 505
BtsIMutI CAGTG 4 cut(s) 367, 624, 722, 866
CciI TCATGA 1 cut(s) 793
Cfr13I GGNCC 1 cut(s) 214
CsiI ACCWGGT 1 cut(s) 79
Csp6I GTAC 4 cut(s) 39, 234, 550, 870
CspCI CAANNNNNGTGG 2 cut(s) 346, 381
CviAII CATG 4 cut(s) 433, 635, 794, 834
CviQI GTAC 4 cut(s) 39, 234, 550, 870
DdeI CTNAG 2 cut(s) 774, 942
DpnI GATC 2 cut(s) 411, 555
DpnII GATC 2 cut(s) 409, 553
DraIII CACNNNGTG 1 cut(s) 743
Eco130I CCWWGG 1 cut(s) 437
Eco147I AGGCCT 1 cut(s) 193
EcoO109I RGGNCCY 1 cut(s) 214
EcoRII CCWGG 4 cut(s) 79, 277, 686, 853
EcoT14I CCWWGG 1 cut(s) 437
ErhI CCWWGG 1 cut(s) 437
FaeI CATG 4 cut(s) 436, 638, 797, 837
FaqI GGGAC 1 cut(s) 407
FatI CATG 4 cut(s) 432, 634, 793, 833
FblI GTMKAC 1 cut(s) 111
Fnu4HI GCNGC 2 cut(s) 302, 618
FokI GGATG 1 cut(s) 512
Fsp4HI GCNGC 2 cut(s) 302, 618
FspBI CTAG 4 cut(s) 218, 677, 693, 734
GluI GCNGC 2 cut(s) 302, 618
GsaI CCCAGC 1 cut(s) 472
GsuI CTGGAG 1 cut(s) 300
HaeIII GGCC 4 cut(s) 193, 215, 304, 691
HapII CCGG 2 cut(s) 47, 473
Hin1II CATG 4 cut(s) 436, 638, 797, 837
HincII GTYRAC 1 cut(s) 631
HindII GTYRAC 1 cut(s) 631
HindIII AAGCTT 2 cut(s) 259, 590
HinfI GANTC 3 cut(s) 6, 603, 790
HpaII CCGG 2 cut(s) 47, 473
HphI GGTGA 3 cut(s) 530, 796, 929
Hpy166II GTNNAC 3 cut(s) 112, 631, 746
Hpy188I TCNGA 1 cut(s) 11
Hpy188III TCNNGA 6 cut(s) 486, 514, 701, 743, 794, 895
Hpy8I GTNNAC 3 cut(s) 112, 631, 746
Hpy99I CGWCG 1 cut(s) 702
HpyAV CCTTC 1 cut(s) 490
HpyCH4III ACNGT 6 cut(s) 124, 362, 450, 628, 861, 917
HpyCH4V TGCA 4 cut(s) 94, 620, 656, 864
HpyF10VI GCNNNNNNNGC 3 cut(s) 617, 653, 734
HpyF3I CTNAG 2 cut(s) 774, 942
Hsp92II CATG 4 cut(s) 436, 638, 797, 837
Kzo9I GATC 2 cut(s) 409, 553
LmnI GCTCC 1 cut(s) 488
Lsp1109I GCAGC 1 cut(s) 604
MabI ACCWGGT 1 cut(s) 79
MaeI CTAG 4 cut(s) 218, 677, 693, 734
MaeIII GTNAC 3 cut(s) 272, 769, 917
MalI GATC 2 cut(s) 411, 555
MboI GATC 2 cut(s) 409, 553
MluCI AATT 6 cut(s) 115, 147, 161, 310, 503, 827
MnlI CCTC 6 cut(s) 110, 113, 384, 391, 790, 793
MroXI GAANNNNTTC 1 cut(s) 481
MseI TTAA 2 cut(s) 210, 822
MspI CCGG 2 cut(s) 47, 473
MspR9I CCNGG 5 cut(s) 81, 279, 474, 688, 855
Mva1269I GAATGC 1 cut(s) 303
MvaI CCWGG 4 cut(s) 81, 279, 688, 855
MwoI GCNNNNNNNGC 3 cut(s) 617, 653, 734
NciI CCSGG 1 cut(s) 474
NdeII GATC 2 cut(s) 409, 553
NlaIII CATG 4 cut(s) 436, 638, 797, 837
NmuCI GTSAC 1 cut(s) 917
NspI RCATGY 2 cut(s) 436, 837
NspV TTCGAA 1 cut(s) 341
PagI TCATGA 1 cut(s) 793
PceI AGGCCT 1 cut(s) 193
PctI GAATGC 1 cut(s) 303
PdmI GAANNNNTTC 1 cut(s) 481
PfeI GAWTC 3 cut(s) 6, 603, 790
PflFI GACNNNGTC 1 cut(s) 398
PkrI GCNGC 2 cut(s) 303, 619
PsiI TTATAA 1 cut(s) 309
Psp6I CCWGG 4 cut(s) 79, 277, 686, 853
PspFI CCCAGC 1 cut(s) 468
PspGI CCWGG 4 cut(s) 79, 277, 686, 853
PspPI GGNCC 1 cut(s) 214
PsyI GACNNNGTC 1 cut(s) 398
RsaI GTAC 4 cut(s) 40, 235, 551, 871
RsaNI GTAC 4 cut(s) 39, 234, 550, 870
SaqAI TTAA 2 cut(s) 210, 822
SatI GCNGC 2 cut(s) 302, 618
Sau3AI GATC 2 cut(s) 409, 553
Sau96I GGNCC 1 cut(s) 214
ScaI AGTACT 1 cut(s) 40
ScrFI CCNGG 5 cut(s) 81, 279, 474, 688, 855
SexAI ACCWGGT 1 cut(s) 79
SfcI CTRYAG 1 cut(s) 108
SfuI TTCGAA 1 cut(s) 341
SmlI CTYRAG 1 cut(s) 587
SmoI CTYRAG 1 cut(s) 587
Sse9I AATT 6 cut(s) 115, 147, 161, 310, 503, 827
SseBI AGGCCT 1 cut(s) 193
SsiI CCGC 2 cut(s) 301, 767
SspMI CTAG 4 cut(s) 218, 677, 693, 734
StuI AGGCCT 1 cut(s) 193
StyD4I CCNGG 5 cut(s) 79, 277, 472, 686, 853
StyI CCWWGG 1 cut(s) 437
TaaI ACNGT 6 cut(s) 124, 362, 450, 628, 861, 917
TaqI TCGA 5 cut(s) 132, 255, 341, 606, 907
TasI AATT 6 cut(s) 115, 147, 161, 310, 503, 827
TatI WGTACW 2 cut(s) 38, 233
TauI GCSGC 1 cut(s) 304
TfiI GAWTC 3 cut(s) 6, 603, 790
Tru1I TTAA 2 cut(s) 210, 822
Tru9I TTAA 2 cut(s) 210, 822
TscAI CASTG 4 cut(s) 367, 631, 729, 866
TseFI GTSAC 1 cut(s) 917
TseI GCWGC 1 cut(s) 617
Tsp45I GTSAC 1 cut(s) 917
TspRI CASTG 4 cut(s) 367, 631, 729, 866
Tth111I GACNNNGTC 1 cut(s) 398
XapI RAATTY 2 cut(s) 503, 827
XceI RCATGY 2 cut(s) 436, 837
XmiI GTMKAC 1 cut(s) 111
XmnI GAANNNNTTC 1 cut(s) 481
XspI CTAG 4 cut(s) 218, 677, 693, 734
ZrmI AGTACT 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.