pycom17g23320

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0000369
Physical Location & Seq
Reverse (-)
21681924 .. 21683094
1171 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g23320.2

Sequence Viewer

Length: 1131 bp
ATGCCAGAAAAGAAACGGATGGCTTTCTGTTCCGGGCTGTCGATAGAAGCAAGCTGTCAAAATATGGCCTTTCCTGCGAACCTGATGCTCCACATTCTCTCCAGATTGCCCGTCAAATCTCTGGTTCGATTCGCCTCGGTGCGGAAAGCATGGGATGCTCTGATCAGGGACTCCCATTTCATTTCTCAGCACCTCCGTCTCAACATTTCGAAAACCGGATGCCTTGTCAAATATCGTTCACAAATTACTCGTAAGCATGTCATTTCTCTGCTGCTTTTAGATGGTTATGTGTTATCAGATTTGGAGATACCATCTGTGATGGATTCCAATCACTTGAAATTCGTGGGATCTTGCAATGGTTTACTTTGTTTAGCTCATGATACTTTTCCTAATCTTGGGTCGCCTATAATTTTGTGGAATCCTGCCATGGCGGAATTTAGGGTCCTCCCAGACAGTCTTATCGGTAGTGCCAATGTACATAATGCGCAGGTCTCCGGTGTTGCTCTTGGATTCGGGTACCACCCGCTTATTGATGACTATAAGTTGGTGAGGATTGTCTCTTTGTCTCGCTCGAAAACACCTTGCATCCGCGCTGAGGTGTATTCACTGAAAACGAACTTTTGGCTGGAGATTGATACGTTTTACTTCGACATTTATGAACCTTCGTGCACTGCTGTGAATGGTTTCCTTTATTGGATTGCATACGGCAGGGTTGAGTCTGAACTGATCTTATCGTTTGACATGCGTAATGAGGCGTTTGGGCAGTTACAGTTGCCGGATTTAAACGTTTTTGGAAGTCCAATGTGCAAAAAACTCGCGGCTTCGAAGGAGTCTCTTTATTTGATGGCTTATACTTTCAGTGGAAGGCAAAAGGAGTTTTATGTGTGGCAAATGGTTGAGCAGAATGCTGAGGTGTTATGGAAAATGGAATGCACAATTGGACCCCTGCTCGGAGTTGAGAGGCCGCTCGGCTGCAGTTTATATGGCGAAATATACATCGAAAGTAGCAGAAGCGAGCTGGTTTTGTATGATCCAACTACTCAGGAAACTAAAAACGTTCCAACTCGTGGCCTTCGTTTTTCCTTAGAAGTCCATTTTTATGTGGAGAGCCTAGTTTCGACTAATGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

377

Amino Acids

42.53

Weight (kDa)

7.09

Isoelectric Point (pI)

50.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis pycom17g23320
rosa_chinensis RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 486
Acc36I ACCTGC 1 cut(s) 478
Acc65I GGTACC 1 cut(s) 516
AccB1I GGYRCC 1 cut(s) 516
AccB7I CCANNNNNTGG 1 cut(s) 1067
AccBSI CCGCTC 1 cut(s) 967
AccII CGCG 2 cut(s) 591, 818
AciI CCGC 6 cut(s) 142, 431, 524, 589, 818, 965
AclI AACGTT 2 cut(s) 786, 1056
AclWI GGATC 2 cut(s) 355, 1025
AcsI RAATTY 2 cut(s) 338, 434
AfaI GTAC 2 cut(s) 477, 518
AfiI CCNNNNNNNGG 5 cut(s) 141, 395, 595, 950, 1067
AgsI TTSAA 1 cut(s) 337
AjuI GAANNNNNNNTTGG 2 cut(s) 921, 953
AleI CACNNNNGTG 1 cut(s) 674
AluBI AGCT 3 cut(s) 54, 374, 1018
AluI AGCT 3 cut(s) 54, 374, 1018
Alw21I GWGCWC 1 cut(s) 671
Alw26I GTCTC 5 cut(s) 203, 496, 562, 570, 837
Alw44I GTGCAC 1 cut(s) 667
AlwI GGATC 2 cut(s) 355, 1025
AoxI GGCC 3 cut(s) 66, 962, 1069
ApaLI GTGCAC 1 cut(s) 667
ApeKI GCWGC 2 cut(s) 271, 972
ApoI RAATTY 2 cut(s) 338, 434
Asp700I GAANNNNTTC 1 cut(s) 683
Asp718I GGTACC 1 cut(s) 516
AspLEI GCGC 2 cut(s) 487, 593
AspS9I GGNCC 2 cut(s) 442, 941
AsuC2I CCSGG 1 cut(s) 34
AsuHPI GGTGA 1 cut(s) 559
AsuII TTCGAA 2 cut(s) 209, 824
AvaII GGWCC 2 cut(s) 442, 941
BaeGI GKGCMC 1 cut(s) 671
BanI GGYRCC 1 cut(s) 516
BauI CACGAG 1 cut(s) 1065
Bbv12I GWGCWC 1 cut(s) 671
BbvCI CCTCAGC 2 cut(s) 594, 909
BbvI GCAGC 2 cut(s) 258, 959
BccI CCATC 5 cut(s) 13, 275, 313, 319, 838
BceAI ACGGC 1 cut(s) 721
BcgI CGANNNNNNTGC 4 cut(s) 67, 101, 796, 830
BclI TGATCA 1 cut(s) 162
BcnI CCSGG 1 cut(s) 34
BcoDI GTCTC 5 cut(s) 203, 496, 562, 570, 837
BfaI CTAG 1 cut(s) 1112
BfmI CTRYAG 1 cut(s) 973
BfuAI ACCTGC 1 cut(s) 478
BisI GCNGC 4 cut(s) 272, 819, 965, 973
BlsI GCNGC 4 cut(s) 273, 820, 966, 974
Bme1390I CCNGG 1 cut(s) 34
Bme18I GGWCC 2 cut(s) 442, 941
BmgT120I GGNCC 2 cut(s) 442, 941
BmiI GGNNCC 3 cut(s) 443, 518, 943
BmrFI CCNGG 1 cut(s) 34
BmsI GCATC 4 cut(s) 75, 145, 209, 594
BpmI CTGGAG 2 cut(s) 85, 647
Bpu10I CCTNAGC 2 cut(s) 594, 909
Bpu14I TTCGAA 2 cut(s) 209, 824
BpuMI CCSGG 1 cut(s) 34
BsaBI GATNNNNATC 1 cut(s) 327
BsaI GGTCTC 1 cut(s) 496
BsaJI CCNNGG 2 cut(s) 135, 426
BsaWI WCCGGW 2 cut(s) 215, 494
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bsc4I CCNNNNNNNGG 5 cut(s) 141, 395, 595, 950, 1067
Bse3DI GCAATG 1 cut(s) 361
Bse8I GATNNNNATC 1 cut(s) 327
BseDI CCNNGG 2 cut(s) 135, 426
BseGI GGATG 4 cut(s) 24, 160, 224, 585
BseJI GATNNNNATC 1 cut(s) 327
BseLI CCNNNNNNNGG 5 cut(s) 141, 395, 595, 950, 1067
BseMI GCAATG 1 cut(s) 361
BseMII CTCAG 4 cut(s) 200, 585, 900, 1055
BseSI GKGCMC 1 cut(s) 671
BseXI GCAGC 2 cut(s) 258, 959
Bsh1236I CGCG 2 cut(s) 591, 818
BshFI GGCC 3 cut(s) 68, 964, 1071
BshNI GGYRCC 1 cut(s) 516
BsiHKAI GWGCWC 1 cut(s) 671
BsiSI CCGG 4 cut(s) 33, 216, 495, 776
BslFI GGGAC 1 cut(s) 182
BslI CCNNNNNNNGG 5 cut(s) 141, 395, 595, 950, 1067
BsmAI GTCTC 5 cut(s) 203, 496, 562, 570, 837
BsmBI CGTCTC 1 cut(s) 203
BsmFI GGGAC 1 cut(s) 182
BsmI GAATGC 2 cut(s) 910, 935
BsnI GGCC 3 cut(s) 68, 964, 1071
Bso31I GGTCTC 1 cut(s) 496
Bsp119I TTCGAA 2 cut(s) 209, 824
Bsp1286I GDGCHC 1 cut(s) 671
Bsp1407I TGTACA 1 cut(s) 475
Bsp143I GATC 4 cut(s) 162, 347, 726, 1030
Bsp19I CCATGG 1 cut(s) 426
BspACI CCGC 6 cut(s) 142, 431, 524, 589, 818, 965
BspANI GGCC 3 cut(s) 68, 964, 1071
BspCNI CTCAG 4 cut(s) 199, 586, 901, 1054
BspFNI CGCG 2 cut(s) 591, 818
BspHI TCATGA 1 cut(s) 376
BspLI GGNNCC 3 cut(s) 443, 518, 943
BspMAI CTGCAG 1 cut(s) 977
BspMI ACCTGC 1 cut(s) 478
BspPI GGATC 2 cut(s) 355, 1025
BspT104I TTCGAA 2 cut(s) 209, 824
BspT107I GGYRCC 1 cut(s) 516
BspTNI GGTCTC 1 cut(s) 496
BsrBI CCGCTC 1 cut(s) 967
BsrDI GCAATG 1 cut(s) 361
BsrGI TGTACA 1 cut(s) 475
BssECI CCNNGG 2 cut(s) 135, 426
BssMI GATC 4 cut(s) 162, 347, 726, 1030
BssSI CACGAG 1 cut(s) 1065
BssT1I CCWWGG 1 cut(s) 426
Bst2BI CACGAG 1 cut(s) 1065
Bst4CI ACNGT 2 cut(s) 455, 771
BstAPI GCANNNNNTGC 1 cut(s) 155
BstAUI TGTACA 1 cut(s) 475
BstBI TTCGAA 2 cut(s) 209, 824
BstC8I GCNNGC 2 cut(s) 52, 1016
BstDEI CTNAG 5 cut(s) 186, 594, 909, 1041, 1084
BstDSI CCRYGG 1 cut(s) 426
BstF5I GGATG 4 cut(s) 24, 160, 224, 585
BstFNI CGCG 2 cut(s) 591, 818
BstHHI GCGC 2 cut(s) 487, 593
BstKTI GATC 4 cut(s) 165, 350, 729, 1033
BstMAI GTCTC 5 cut(s) 203, 496, 562, 570, 837
BstMBI GATC 4 cut(s) 162, 347, 726, 1030
BstMWI GCNNNNNNNGC 2 cut(s) 74, 155
BstNSI RCATGY 2 cut(s) 260, 745
BstSCI CCNGG 1 cut(s) 32
BstSFI CTRYAG 1 cut(s) 973
BstSLI GKGCMC 1 cut(s) 671
BstUI CGCG 2 cut(s) 591, 818
BstV1I GCAGC 2 cut(s) 258, 959
BstX2I RGATCY 1 cut(s) 347
BstYI RGATCY 1 cut(s) 347
BsuRI GGCC 3 cut(s) 68, 964, 1071
BtgI CCRYGG 1 cut(s) 426
BtsCI GGATG 4 cut(s) 24, 160, 224, 585
BtsI GCAGTG 1 cut(s) 669
BtsIMutI CAGTG 3 cut(s) 605, 669, 865
BveI ACCTGC 1 cut(s) 478
Cac8I GCNNGC 2 cut(s) 52, 1016
CciI TCATGA 1 cut(s) 376
CfoI GCGC 2 cut(s) 487, 593
Cfr13I GGNCC 2 cut(s) 442, 941
Csp6I GTAC 2 cut(s) 476, 517
CviAII CATG 5 cut(s) 150, 257, 377, 427, 742
CviQI GTAC 2 cut(s) 476, 517
DdeI CTNAG 5 cut(s) 186, 594, 909, 1041, 1084
DpnI GATC 4 cut(s) 164, 349, 728, 1032
DpnII GATC 4 cut(s) 162, 347, 726, 1030
DraI TTTAAA 1 cut(s) 783
EciI GGCGGA 1 cut(s) 446
Eco130I CCWWGG 1 cut(s) 426
Eco31I GGTCTC 1 cut(s) 496
Eco47I GGWCC 2 cut(s) 442, 941
EcoO109I RGGNCCY 1 cut(s) 442
EcoT14I CCWWGG 1 cut(s) 426
ErhI CCWWGG 1 cut(s) 426
Esp3I CGTCTC 1 cut(s) 203
FaeI CATG 5 cut(s) 153, 260, 380, 430, 745
FaqI GGGAC 1 cut(s) 182
FatI CATG 5 cut(s) 149, 256, 376, 426, 741
FauI CCCGC 1 cut(s) 531
FbaI TGATCA 1 cut(s) 162
Fnu4HI GCNGC 4 cut(s) 272, 819, 965, 973
FokI GGATG 4 cut(s) 31, 167, 231, 572
Fsp4HI GCNGC 4 cut(s) 272, 819, 965, 973
FspBI CTAG 1 cut(s) 1112
FspI TGCGCA 1 cut(s) 486
GlaI GCGC 2 cut(s) 486, 592
GluI GCNGC 4 cut(s) 272, 819, 965, 973
GsuI CTGGAG 2 cut(s) 85, 647
HaeIII GGCC 3 cut(s) 68, 964, 1071
HapII CCGG 4 cut(s) 33, 216, 495, 776
HhaI GCGC 2 cut(s) 487, 593
Hin1II CATG 5 cut(s) 153, 260, 380, 430, 745
Hin6I GCGC 2 cut(s) 485, 591
HinP1I GCGC 2 cut(s) 485, 591
HinfI GANTC 7 cut(s) 129, 170, 323, 418, 510, 716, 830
HpaII CCGG 4 cut(s) 33, 216, 495, 776
HphI GGTGA 1 cut(s) 559
Hpy166II GTNNAC 3 cut(s) 239, 362, 669
Hpy188I TCNGA 4 cut(s) 162, 298, 721, 953
Hpy188III TCNNGA 3 cut(s) 102, 377, 1043
Hpy8I GTNNAC 3 cut(s) 239, 362, 669
HpyAV CCTTC 4 cut(s) 672, 820, 858, 1082
HpyCH4III ACNGT 2 cut(s) 455, 771
HpyCH4IV ACGT 3 cut(s) 638, 786, 1056
HpyCH4V TGCA 7 cut(s) 354, 585, 669, 701, 807, 933, 975
HpyF10VI GCNNNNNNNGC 2 cut(s) 74, 155
HpyF3I CTNAG 5 cut(s) 186, 594, 909, 1041, 1084
HpySE526I ACGT 3 cut(s) 638, 786, 1056
Hsp92II CATG 5 cut(s) 153, 260, 380, 430, 745
HspAI GCGC 2 cut(s) 485, 591
KpnI GGTACC 1 cut(s) 520
Ksp22I TGATCA 1 cut(s) 162
Kzo9I GATC 4 cut(s) 162, 347, 726, 1030
LmnI GCTCC 1 cut(s) 93
Lsp1109I GCAGC 2 cut(s) 258, 959
LweI GCATC 4 cut(s) 75, 145, 209, 594
MaeI CTAG 1 cut(s) 1112
MaeII ACGT 3 cut(s) 638, 786, 1056
MaeIII GTNAC 1 cut(s) 765
MalI GATC 4 cut(s) 164, 349, 728, 1032
MbiI CCGCTC 1 cut(s) 967
MboI GATC 4 cut(s) 162, 347, 726, 1030
MfeI CAATTG 1 cut(s) 936
MflI RGATCY 1 cut(s) 347
MhlI GDGCHC 1 cut(s) 671
MluCI AATT 5 cut(s) 243, 338, 408, 434, 936
MlyI GAGTC 3 cut(s) 164, 725, 839
MmeI TCCRAC 2 cut(s) 1058, 1085
MnlI CCTC 8 cut(s) 145, 203, 455, 543, 589, 745, 904, 954
MroXI GAANNNNTTC 1 cut(s) 683
MseI TTAA 1 cut(s) 782
MslI CAYNNNNRTG 2 cut(s) 674, 1098
MspI CCGG 4 cut(s) 33, 216, 495, 776
MspR9I CCNGG 1 cut(s) 34
MunI CAATTG 1 cut(s) 936
Mva1269I GAATGC 2 cut(s) 910, 935
MvnI CGCG 2 cut(s) 591, 818
MwoI GCNNNNNNNGC 2 cut(s) 74, 155
NciI CCSGG 1 cut(s) 34
NcoI CCATGG 1 cut(s) 426
NdeII GATC 4 cut(s) 162, 347, 726, 1030
NlaIII CATG 5 cut(s) 153, 260, 380, 430, 745
NlaIV GGNNCC 3 cut(s) 443, 518, 943
NmeAIII GCCGAG 1 cut(s) 948
NsbI TGCGCA 1 cut(s) 486
NspI RCATGY 2 cut(s) 260, 745
NspV TTCGAA 2 cut(s) 209, 824
OliI CACNNNNGTG 1 cut(s) 674
PagI TCATGA 1 cut(s) 376
PcsI WCGNNNNNNNCGW 1 cut(s) 1072
PctI GAATGC 2 cut(s) 910, 935
PdmI GAANNNNTTC 1 cut(s) 683
PfeI GAWTC 4 cut(s) 129, 323, 418, 510
PflMI CCANNNNNTGG 1 cut(s) 1067
PkrI GCNGC 4 cut(s) 273, 820, 966, 974
PleI GAGTC 3 cut(s) 164, 724, 838
PpsI GAGTC 3 cut(s) 164, 724, 838
PpuMI RGGWCCY 1 cut(s) 442
Psp1406I AACGTT 2 cut(s) 786, 1056
Psp5II RGGWCCY 1 cut(s) 442
PspN4I GGNNCC 3 cut(s) 443, 518, 943
PspPI GGNCC 2 cut(s) 442, 941
PspPPI RGGWCCY 1 cut(s) 442
PstI CTGCAG 1 cut(s) 977
PsuI RGATCY 1 cut(s) 347
RsaI GTAC 2 cut(s) 477, 518
RsaNI GTAC 2 cut(s) 476, 517
RseI CAYNNNNRTG 2 cut(s) 674, 1098
SaqAI TTAA 1 cut(s) 782
SatI GCNGC 4 cut(s) 272, 819, 965, 973
Sau3AI GATC 4 cut(s) 162, 347, 726, 1030
Sau96I GGNCC 2 cut(s) 442, 941
SchI GAGTC 3 cut(s) 164, 725, 839
ScrFI CCNGG 1 cut(s) 34
SduI GDGCHC 1 cut(s) 671
SfaNI GCATC 4 cut(s) 75, 145, 209, 594
SfcI CTRYAG 1 cut(s) 973
SfuI TTCGAA 2 cut(s) 209, 824
SinI GGWCC 2 cut(s) 442, 941
SmiMI CAYNNNNRTG 2 cut(s) 674, 1098
Sse9I AATT 5 cut(s) 243, 338, 408, 434, 936
SsiI CCGC 6 cut(s) 142, 431, 524, 589, 818, 965
SspMI CTAG 1 cut(s) 1112
StyD4I CCNGG 1 cut(s) 32
StyI CCWWGG 1 cut(s) 426
TaaI ACNGT 2 cut(s) 455, 771
TaiI ACGT 3 cut(s) 641, 789, 1059
TaqI TCGA 8 cut(s) 41, 127, 209, 572, 648, 824, 999, 1118
TasI AATT 5 cut(s) 243, 338, 408, 434, 936
TatI WGTACW 1 cut(s) 475
TauI GCSGC 2 cut(s) 821, 967
TfiI GAWTC 4 cut(s) 129, 323, 418, 510
Tru1I TTAA 1 cut(s) 782
Tru9I TTAA 1 cut(s) 782
TscAI CASTG 3 cut(s) 612, 676, 865
TseI GCWGC 2 cut(s) 271, 972
TspDTI ATGAA 2 cut(s) 169, 672
TspGWI ACGGA 2 cut(s) 31, 185
TspRI CASTG 3 cut(s) 612, 676, 865
Van91I CCANNNNNTGG 1 cut(s) 1067
VneI GTGCAC 1 cut(s) 667
VpaK11BI GGWCC 2 cut(s) 442, 941
XapI RAATTY 2 cut(s) 338, 434
XceI RCATGY 2 cut(s) 260, 745
XmnI GAANNNNTTC 1 cut(s) 683
XspI CTAG 1 cut(s) 1112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.