Rroxscaffold_6G00409480

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000369
Physical Location & Seq
Forward (+)
31995804 .. 31997165
1362 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00409480.1

Sequence Viewer

Length: 1170 bp
ATGGAAACTAGTAGAAGCAAAGTTGTTAAGGTGAGCGATACTTTAACACTAGCTGGAAGTTCTGAAAATAATTTCAAACCACTACTTGGATTCTCATTGCTTCGAGATGAAGAAACAACGCTTTTAAGATTACCTTTCTGGAACCTTACAAGCCAAAGAAGTGGTGGTTTATGGCTTGTGGGATCTAGTAATGGCCTGGTTTGCTGTGTTCTGTTAATTGGGATTGAGAATGATAAGAATAGAACTCCAGAGGGTGAAGAAGATAATGCTACTGTGTTCCAACAATTAATAGTAGTATGGAACCCAGCAACAGAACAATTTAGGTTTCTTCCTAAACCTAATAATAATATTCCTCTGGATCAGGATGAGGAGGAGGATATACTCCGTGTAAAGGACAACTCTTTGCCCTTTCCTCTTATAGGTTTTGATTTCGTACATGATCATGACATTACTGAATATAAACTGGTCAGAGTTTTCCATCATGATAGTGATGATCCCTACGATCATGGCAAAGTACTAACAACTTTTCGAGCTCAAGTCTTCTTCCAAAGCACAAATTCTTGGAGACAAGCCAAGAACGAGTTAGGGTTTCCATCATGTGAAAATTCTTTTGCATCAACTTCGATTACATTGAATGGAGTGCTGTATTGGAAGGTACAGCGAGCCGGGGACGAGTGCTGTGTTCTGTCATTCAATTTACGTGAGGAGGTTTTCAATGTGATACAGCTACCAATGGATCTACGAAATCATGATGATTGGGGCGGACTCCAATTATATTCATGGAGAAATTCACCGGCGACTGTAGCACTTGATTATTCGGCCAATGACGATCTCAACGCAGTGCTTTGGGTGATGAGTACTAATCAAGAATCAAAGTGGAGTTGTAAGAATGGTGCACAAATACAAAATCCAGCTTGGACACGACAGTTCAGATTCAAATACTCAGTAATTCCAGAAGGAACGCGCCTCCTGGGAAGTTGGAAGGATCAATTTCTCTTTGCATCCGACAAAAGTGATGAAGTTTTTGATGCGGCAGCTGATAATATTGTGCCTCAAGACCTGTTTTCGTACGACCCTAAAAGCGAGACAAAGAGAAAAATTCTCAAAGATGGAGAGAGGATCAAGTTTTGTGGAGGAGTAAATTATGTGGAGAGCCTAGTTCCAGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

389

Amino Acids

44.34

Weight (kDa)

4.93

Isoelectric Point (pI)

44.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 95 - 389 1.4e-15 F-box associated beta propeller domain
FBA_3 PF08268 97 - 298 1.2e-18 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis pycom17g23320
rosa_chinensis RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 86
AccII CGCG 1 cut(s) 964
AciI CCGC 2 cut(s) 762, 1031
AclWI GGATC 6 cut(s) 190, 366, 488, 744, 993, 1127
AcoI YGGCCR 1 cut(s) 819
AcsI RAATTY 4 cut(s) 556, 604, 787, 1098
AfaI GTAC 5 cut(s) 435, 516, 657, 859, 1070
AfiI CCNNNNNNNGG 3 cut(s) 86, 391, 419
AgsI TTSAA 5 cut(s) 76, 634, 694, 715, 937
AhlI ACTAGT 1 cut(s) 8
AjnI CCWGG 2 cut(s) 195, 969
AluBI AGCT 5 cut(s) 53, 533, 727, 914, 1037
AluI AGCT 5 cut(s) 53, 533, 727, 914, 1037
Alw21I GWGCWC 2 cut(s) 535, 898
Alw26I GTCTC 2 cut(s) 559, 1079
Alw44I GTGCAC 1 cut(s) 894
AlwI GGATC 6 cut(s) 190, 366, 488, 744, 993, 1127
AoxI GGCC 2 cut(s) 193, 819
ApaLI GTGCAC 1 cut(s) 894
ApeKI GCWGC 1 cut(s) 1034
ApoI RAATTY 4 cut(s) 556, 604, 787, 1098
AseI ATTAAT 1 cut(s) 287
AspLEI GCGC 1 cut(s) 966
AsuC2I CCSGG 1 cut(s) 667
AsuHPI GGTGA 4 cut(s) 43, 266, 783, 862
BaeGI GKGCMC 1 cut(s) 898
BanII GRGCYC 1 cut(s) 535
BbsI GAAGAC 1 cut(s) 532
Bbv12I GWGCWC 2 cut(s) 535, 898
BbvI GCAGC 1 cut(s) 1046
BccI CCATC 3 cut(s) 486, 601, 1103
BcgI CGANNNNNNTGC 2 cut(s) 603, 637
BciT130I CCWGG 2 cut(s) 197, 971
BclI TGATCA 1 cut(s) 439
BcnI CCSGG 1 cut(s) 667
BcoDI GTCTC 2 cut(s) 559, 1079
BcuI ACTAGT 1 cut(s) 8
BfaI CTAG 5 cut(s) 9, 50, 186, 1157, 1168
BfmI CTRYAG 1 cut(s) 801
BisI GCNGC 2 cut(s) 1032, 1035
BlsI GCNGC 2 cut(s) 1033, 1036
BmcAI AGTACT 2 cut(s) 516, 859
Bme1390I CCNGG 3 cut(s) 197, 667, 971
BmiI GGNNCC 2 cut(s) 143, 302
BmrFI CCNGG 3 cut(s) 197, 667, 971
BmsI GCATC 3 cut(s) 623, 1010, 1018
BpiI GAAGAC 1 cut(s) 532
BpmI CTGGAG 1 cut(s) 231
BpuEI CTTGAG 2 cut(s) 519, 1038
BpuMI CCSGG 1 cut(s) 667
BsaAI YACGTR 1 cut(s) 701
BsaJI CCNNGG 2 cut(s) 666, 970
Bsc4I CCNNNNNNNGG 3 cut(s) 86, 391, 419
Bse118I RCCGGY 1 cut(s) 793
Bse1I ACTGG 2 cut(s) 468, 1163
Bse3DI GCAATG 1 cut(s) 95
BseBI CCWGG 2 cut(s) 197, 971
BseDI CCNNGG 2 cut(s) 666, 970
BseGI GGATG 2 cut(s) 370, 1001
BseLI CCNNNNNNNGG 3 cut(s) 86, 391, 419
BseMI GCAATG 1 cut(s) 95
BseMII CTCAG 1 cut(s) 957
BseNI ACTGG 2 cut(s) 468, 1163
BseRI GAGGAG 4 cut(s) 383, 386, 719, 1149
BseSI GKGCMC 1 cut(s) 898
BseXI GCAGC 1 cut(s) 1046
BseYI CCCAGC 1 cut(s) 304
Bsh1236I CGCG 1 cut(s) 964
BshFI GGCC 2 cut(s) 195, 821
BsiHKAI GWGCWC 2 cut(s) 535, 898
BsiSI CCGG 2 cut(s) 666, 794
BsiWI CGTACG 1 cut(s) 1068
BslFI GGGAC 1 cut(s) 683
BslI CCNNNNNNNGG 3 cut(s) 86, 391, 419
BsmAI GTCTC 2 cut(s) 559, 1079
BsmFI GGGAC 1 cut(s) 683
BsnI GGCC 2 cut(s) 195, 821
Bsp1286I GDGCHC 2 cut(s) 535, 898
Bsp143I GATC 9 cut(s) 182, 358, 439, 493, 502, 736, 829, 985, 1119
BspACI CCGC 2 cut(s) 762, 1031
BspANI GGCC 2 cut(s) 195, 821
BspCNI CTCAG 1 cut(s) 956
BspFNI CGCG 1 cut(s) 964
BspHI TCATGA 3 cut(s) 442, 481, 748
BspLI GGNNCC 2 cut(s) 143, 302
BspPI GGATC 6 cut(s) 190, 366, 488, 744, 993, 1127
BsrDI GCAATG 1 cut(s) 95
BsrFI RCCGGY 1 cut(s) 793
BsrI ACTGG 2 cut(s) 468, 1163
BssAI RCCGGY 1 cut(s) 793
BssECI CCNNGG 2 cut(s) 666, 970
BssMI GATC 9 cut(s) 182, 358, 439, 493, 502, 736, 829, 985, 1119
Bst2UI CCWGG 2 cut(s) 197, 971
Bst4CI ACNGT 3 cut(s) 274, 802, 927
BstBAI YACGTR 1 cut(s) 701
BstC8I GCNNGC 1 cut(s) 663
BstDEI CTNAG 1 cut(s) 943
BstENI CCTNNNNNAGG 1 cut(s) 417
BstF5I GGATG 2 cut(s) 370, 1001
BstFNI CGCG 1 cut(s) 964
BstHHI GCGC 1 cut(s) 966
BstKTI GATC 9 cut(s) 185, 361, 442, 496, 505, 739, 832, 988, 1122
BstMAI GTCTC 2 cut(s) 559, 1079
BstMBI GATC 9 cut(s) 182, 358, 439, 493, 502, 736, 829, 985, 1119
BstMWI GCNNNNNNNGC 2 cut(s) 201, 803
BstNI CCWGG 2 cut(s) 197, 971
BstSCI CCNGG 3 cut(s) 195, 665, 969
BstSFI CTRYAG 1 cut(s) 801
BstSLI GKGCMC 1 cut(s) 898
BstUI CGCG 1 cut(s) 964
BstV1I GCAGC 1 cut(s) 1046
BstV2I GAAGAC 1 cut(s) 532
BstX2I RGATCY 2 cut(s) 182, 736
BstXI CCANNNNNNTGG 1 cut(s) 161
BstYI RGATCY 2 cut(s) 182, 736
BsuRI GGCC 2 cut(s) 195, 821
BtsCI GGATG 2 cut(s) 370, 1001
BtsI GCAGTG 1 cut(s) 846
BtsIMutI CAGTG 1 cut(s) 846
Cac8I GCNNGC 1 cut(s) 663
CciI TCATGA 3 cut(s) 442, 481, 748
CfoI GCGC 1 cut(s) 966
Cfr10I RCCGGY 1 cut(s) 793
Csp6I GTAC 5 cut(s) 434, 515, 656, 858, 1069
CspCI CAANNNNNGTGG 2 cut(s) 1111, 1146
CviAII CATG 7 cut(s) 437, 443, 482, 506, 597, 749, 780
CviQI GTAC 5 cut(s) 434, 515, 656, 858, 1069
DdeI CTNAG 1 cut(s) 943
DpnI GATC 9 cut(s) 184, 360, 441, 495, 504, 738, 831, 987, 1121
DpnII GATC 9 cut(s) 182, 358, 439, 493, 502, 736, 829, 985, 1119
EaeI YGGCCR 1 cut(s) 819
EciI GGCGGA 1 cut(s) 777
Ecl136II GAGCTC 1 cut(s) 533
Eco24I GRGCYC 1 cut(s) 535
Eco53kI GAGCTC 1 cut(s) 533
EcoICRI GAGCTC 1 cut(s) 533
EcoNI CCTNNNNNAGG 1 cut(s) 417
EcoRII CCWGG 2 cut(s) 195, 969
EcoT38I GRGCYC 1 cut(s) 535
FaeI CATG 7 cut(s) 440, 446, 485, 509, 600, 752, 783
FalI AAGNNNNNCTT 2 cut(s) 118, 150
FaqI GGGAC 1 cut(s) 683
FatI CATG 7 cut(s) 436, 442, 481, 505, 596, 748, 779
FbaI TGATCA 1 cut(s) 439
Fnu4HI GCNGC 2 cut(s) 1032, 1035
FokI GGATG 2 cut(s) 377, 988
FriOI GRGCYC 1 cut(s) 535
Fsp4HI GCNGC 2 cut(s) 1032, 1035
FspBI CTAG 5 cut(s) 9, 50, 186, 1157, 1168
GlaI GCGC 1 cut(s) 965
GluI GCNGC 2 cut(s) 1032, 1035
GsaI CCCAGC 1 cut(s) 308
GsuI CTGGAG 1 cut(s) 231
HaeIII GGCC 2 cut(s) 195, 821
HapII CCGG 2 cut(s) 666, 794
HhaI GCGC 1 cut(s) 966
Hin1II CATG 7 cut(s) 440, 446, 485, 509, 600, 752, 783
Hin6I GCGC 1 cut(s) 964
HinP1I GCGC 1 cut(s) 964
HinfI GANTC 4 cut(s) 90, 765, 869, 933
HpaII CCGG 2 cut(s) 666, 794
HphI GGTGA 4 cut(s) 43, 266, 783, 862
Hpy166II GTNNAC 1 cut(s) 896
Hpy188I TCNGA 4 cut(s) 64, 470, 932, 1006
Hpy8I GTNNAC 1 cut(s) 896
HpyAV CCTTC 3 cut(s) 646, 950, 976
HpyCH4III ACNGT 3 cut(s) 274, 802, 927
HpyCH4IV ACGT 1 cut(s) 700
HpyCH4V TGCA 3 cut(s) 614, 896, 1001
HpyF10VI GCNNNNNNNGC 2 cut(s) 201, 803
HpyF3I CTNAG 1 cut(s) 943
HpySE526I ACGT 1 cut(s) 700
Hsp92II CATG 7 cut(s) 440, 446, 485, 509, 600, 752, 783
HspAI GCGC 1 cut(s) 964
Ksp22I TGATCA 1 cut(s) 439
Kzo9I GATC 9 cut(s) 182, 358, 439, 493, 502, 736, 829, 985, 1119
Lsp1109I GCAGC 1 cut(s) 1046
LweI GCATC 3 cut(s) 623, 1010, 1018
MaeI CTAG 5 cut(s) 9, 50, 186, 1157, 1168
MaeII ACGT 1 cut(s) 700
MalI GATC 9 cut(s) 184, 360, 441, 495, 504, 738, 831, 987, 1121
MboI GATC 9 cut(s) 182, 358, 439, 493, 502, 736, 829, 985, 1119
MboII GAAGA 6 cut(s) 122, 269, 272, 320, 532, 535
MflI RGATCY 2 cut(s) 182, 736
MhlI GDGCHC 2 cut(s) 535, 898
MlyI GAGTC 1 cut(s) 759
MmeI TCCRAC 3 cut(s) 304, 959, 1029
MseI TTAA 5 cut(s) 27, 44, 125, 215, 287
MslI CAYNNNNRTG 2 cut(s) 441, 486
MspA1I CMGCKG 1 cut(s) 1037
MspI CCGG 2 cut(s) 666, 794
MspR9I CCNGG 3 cut(s) 197, 667, 971
MvaI CCWGG 2 cut(s) 197, 971
MvnI CGCG 1 cut(s) 964
MwoI GCNNNNNNNGC 2 cut(s) 201, 803
NciI CCSGG 1 cut(s) 667
NdeII GATC 9 cut(s) 182, 358, 439, 493, 502, 736, 829, 985, 1119
NlaIII CATG 7 cut(s) 440, 446, 485, 509, 600, 752, 783
NlaIV GGNNCC 2 cut(s) 143, 302
PagI TCATGA 3 cut(s) 442, 481, 748
PfeI GAWTC 3 cut(s) 90, 869, 933
Pfl23II CGTACG 1 cut(s) 1068
PflMI CCANNNNNTGG 1 cut(s) 86
PkrI GCNGC 2 cut(s) 1033, 1036
PleI GAGTC 1 cut(s) 759
PpsI GAGTC 1 cut(s) 759
Ppu21I YACGTR 1 cut(s) 701
PshBI ATTAAT 1 cut(s) 287
Psp124BI GAGCTC 1 cut(s) 535
Psp6I CCWGG 2 cut(s) 195, 969
PspFI CCCAGC 1 cut(s) 304
PspGI CCWGG 2 cut(s) 195, 969
PspLI CGTACG 1 cut(s) 1068
PspN4I GGNNCC 2 cut(s) 143, 302
PsuI RGATCY 2 cut(s) 182, 736
PvuII CAGCTG 1 cut(s) 1037
RsaI GTAC 5 cut(s) 435, 516, 657, 859, 1070
RsaNI GTAC 5 cut(s) 434, 515, 656, 858, 1069
RseI CAYNNNNRTG 2 cut(s) 441, 486
SacI GAGCTC 1 cut(s) 535
SaqAI TTAA 5 cut(s) 27, 44, 125, 215, 287
SatI GCNGC 2 cut(s) 1032, 1035
Sau3AI GATC 9 cut(s) 182, 358, 439, 493, 502, 736, 829, 985, 1119
ScaI AGTACT 2 cut(s) 516, 859
SchI GAGTC 1 cut(s) 759
ScrFI CCNGG 3 cut(s) 197, 667, 971
SduI GDGCHC 2 cut(s) 535, 898
SfaNI GCATC 3 cut(s) 623, 1010, 1018
SfcI CTRYAG 1 cut(s) 801
SgrAI CRCCGGYG 1 cut(s) 793
SmiMI CAYNNNNRTG 2 cut(s) 441, 486
SmlI CTYRAG 2 cut(s) 534, 1053
SmoI CTYRAG 2 cut(s) 534, 1053
SpeI ACTAGT 1 cut(s) 8
SsiI CCGC 2 cut(s) 762, 1031
SspI AATATT 2 cut(s) 349, 1045
SspMI CTAG 5 cut(s) 9, 50, 186, 1157, 1168
SstI GAGCTC 1 cut(s) 535
StyD4I CCNGG 3 cut(s) 195, 665, 969
TaaI ACNGT 3 cut(s) 274, 802, 927
TaiI ACGT 1 cut(s) 703
TaqI TCGA 3 cut(s) 103, 529, 623
TatI WGTACW 2 cut(s) 514, 857
TauI GCSGC 1 cut(s) 1034
TfiI GAWTC 3 cut(s) 90, 869, 933
Tru1I TTAA 5 cut(s) 27, 44, 125, 215, 287
Tru9I TTAA 5 cut(s) 27, 44, 125, 215, 287
TscAI CASTG 1 cut(s) 846
TseI GCWGC 1 cut(s) 1034
TspDTI ATGAA 3 cut(s) 123, 768, 1032
TspGWI ACGGA 1 cut(s) 374
TspRI CASTG 1 cut(s) 846
Van91I CCANNNNNTGG 1 cut(s) 86
VneI GTGCAC 1 cut(s) 894
VspI ATTAAT 1 cut(s) 287
XagI CCTNNNNNAGG 1 cut(s) 417
XapI RAATTY 4 cut(s) 556, 604, 787, 1098
XcmI CCANNNNNNNNNTGG 1 cut(s) 161
XspI CTAG 5 cut(s) 9, 50, 186, 1157, 1168
ZrmI AGTACT 2 cut(s) 516, 859
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.