Rroxscaffold_7G00181110

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000369
Physical Location & Seq
Reverse (-)
20340067 .. 20342170
2104 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00181110.1

Sequence Viewer

Length: 1257 bp
ATGAATGCAGCTGACTGGATCAAGCCTGTGAAGTGTTTAATACTTGTCACCGGGGAAGAAGAGGCCAAGCTAATGGAAGCTGGAAGCTCTAATTTTCTGGCTGTAGCTGATGAAAGTGTTCTAGTAGAAATTCTCTCAAAACTGCCTCTCAAGTCTATATATAGGTTTAGGTGTGTATCGAAAGAGTGGAATGCTCTCACTAGAACTTCATATTTCCTGGACAGACATCGTCTTCACAGCTCTCGCCACCTCCTCCTCATCTCCTCCTCTTCTCTTGCTGATCAGAAACCAGCTGGAATCTCATTACTTGCCGACGAAGAAACGGCACTTTCAAGTTTGAATATACCTTTCCTCCCCAACGATGCAAGATGGGATTTAGATTTTGTGGGATCTAGTAATGGGTTAGTTTGCTGTAATAAGTTTCTTGATGGTAATGTATTAGCCATAATAGTATGGAACCCAGCAACCACACAATTTAGTTATCATCGCCATTCCTTTGAGGAGGAACTTGAGAATGCTACTTCCTATCCTCTTATAGGTTTTGATTTCATGCATAGCACCAATGTGTACAAAATGGTGGAAGTTTTCCTATATGGCAGTGATGATCCGGATGATCCCCTAAAACTTTGTTTTGGAGCCACAGTCTTCACCCAGAATGCACCTTCTTGGAGAGTAGTTGAGTCGAGAATTGGACTTGCATCATGTAAAATGTGTTATACAAATCAATCTACTACCTTGAATGGAGTGCTGTATTGGTTGGTAGAGCATACATCCAATGGGTTTGCTGTCGTTTCGTTTAGTTTACATGATGAGGCCTTCAAGGATATATGTAAATCACTACCAGAAGAAATACGCTATGTCAGTGACAATAGCCTCTTCCCAACATTAGTTTCATGGAGAAATTCACTTGCAGTTGTAGGTGTGGATCAGGGTGACAACTTAGTGCTTTGGGTGGACAGTACTGCTGATCAGGAATCTGATTGGATTGAACAAATGAGAATCAGATGGCCGTCGCTATGTGAAGGAAGTTGGTTGTTATTGAGAGGAGTTTGGAGGGATCAATTTGTTTTCAGCAAAAAAGGATGTGAAGTTGGTGCACATAATGAACCGGACAACCTGTTTTTGTATAACCCTATAACCGAGGCATTGAGAAAGTTTCGTCTGTTTTGTATCAATTTGGCCATGGGAACTATTAGGGCGAAGAAGGAAGAAGATGAAGAAGAGGGGAAGACAGGCAATCGGAATGTGAGGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

418

Amino Acids

47.31

Weight (kDa)

5.13

Isoelectric Point (pI)

35.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 40 - 73 4.5e-07 F-box domain
FBA_3 PF08268 122 - 388 1.8e-14 F-box associated beta propeller domain
FBA_1 PF07734 123 - 339 5.4e-15 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis pycom17g23320
rosa_chinensis RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 607
AclWI GGATC 6 cut(s) 26, 397, 599, 608, 933, 1065
AcoI YGGCCR 2 cut(s) 1007, 1179
AcsI RAATTY 2 cut(s) 129, 901
AfaI GTAC 2 cut(s) 569, 961
AfiI CCNNNNNNNGG 1 cut(s) 536
AgsI TTSAA 5 cut(s) 333, 340, 739, 820, 989
AjnI CCWGG 1 cut(s) 216
AjuI GAANNNNNNNTTGG 2 cut(s) 874, 906
AleI CACNNNNGTG 1 cut(s) 563
AluBI AGCT 7 cut(s) 11, 70, 80, 87, 107, 240, 293
AluI AGCT 7 cut(s) 11, 70, 80, 87, 107, 240, 293
Alw21I GWGCWC 1 cut(s) 1099
Alw44I GTGCAC 1 cut(s) 1095
AlwI GGATC 6 cut(s) 26, 397, 599, 608, 933, 1065
Aor13HI TCCGGA 1 cut(s) 607
AoxI GGCC 4 cut(s) 63, 813, 1007, 1179
ApaLI GTGCAC 1 cut(s) 1095
ApeKI GCWGC 1 cut(s) 8
ApoI RAATTY 2 cut(s) 129, 901
Asp700I GAANNNNTTC 1 cut(s) 117
AsuC2I CCSGG 1 cut(s) 52
AsuHPI GGTGA 3 cut(s) 40, 640, 944
BaeGI GKGCMC 1 cut(s) 1099
BalI TGGCCA 1 cut(s) 1181
BbsI GAAGAC 3 cut(s) 224, 637, 1235
Bbv12I GWGCWC 1 cut(s) 1099
BbvI GCAGC 1 cut(s) 20
BccI CCATC 3 cut(s) 363, 422, 999
BceAI ACGGC 2 cut(s) 339, 994
BciT130I CCWGG 1 cut(s) 218
BclI TGATCA 2 cut(s) 280, 967
BcnI CCSGG 1 cut(s) 52
BfaI CTAG 3 cut(s) 122, 201, 393
BfmI CTRYAG 1 cut(s) 102
BisI GCNGC 1 cut(s) 9
BlsI GCNGC 1 cut(s) 10
BmcAI AGTACT 1 cut(s) 961
Bme1390I CCNGG 2 cut(s) 52, 218
BmiI GGNNCC 2 cut(s) 458, 637
BmrFI CCNGG 2 cut(s) 52, 218
BmsI GCATC 2 cut(s) 352, 707
BpiI GAAGAC 3 cut(s) 224, 637, 1235
BpuEI CTTGAG 2 cut(s) 134, 530
BpuMI CCSGG 1 cut(s) 52
BsaJI CCNNGG 3 cut(s) 51, 1140, 1182
BsaWI WCCGGW 2 cut(s) 607, 1108
BsaXI ACNNNNNCTCC 4 cut(s) 336, 366, 627, 657
Bsc4I CCNNNNNNNGG 1 cut(s) 536
Bse1I ACTGG 1 cut(s) 20
BseAI TCCGGA 1 cut(s) 607
BseBI CCWGG 1 cut(s) 218
BseDI CCNNGG 3 cut(s) 51, 1140, 1182
BseGI GGATG 3 cut(s) 616, 770, 1088
BseLI CCNNNNNNNGG 1 cut(s) 536
BseNI ACTGG 1 cut(s) 20
BseRI GAGGAG 6 cut(s) 242, 245, 253, 256, 515, 1059
BseSI GKGCMC 1 cut(s) 1099
BseXI GCAGC 1 cut(s) 20
BseYI CCCAGC 1 cut(s) 460
BshFI GGCC 4 cut(s) 65, 815, 1009, 1181
BsiHKAI GWGCWC 1 cut(s) 1099
BsiSI CCGG 3 cut(s) 51, 608, 1109
BslI CCNNNNNNNGG 1 cut(s) 536
BsmI GAATGC 4 cut(s) 10, 196, 520, 661
BsnI GGCC 4 cut(s) 65, 815, 1009, 1181
Bsp1286I GDGCHC 1 cut(s) 1099
Bsp13I TCCGGA 1 cut(s) 607
Bsp1407I TGTACA 1 cut(s) 567
Bsp143I GATC 8 cut(s) 18, 280, 389, 604, 613, 925, 967, 1057
Bsp19I CCATGG 1 cut(s) 1182
BspANI GGCC 4 cut(s) 65, 815, 1009, 1181
BspEI TCCGGA 1 cut(s) 607
BspLI GGNNCC 2 cut(s) 458, 637
BspPI GGATC 6 cut(s) 26, 397, 599, 608, 933, 1065
BsrGI TGTACA 1 cut(s) 567
BsrI ACTGG 1 cut(s) 20
BssECI CCNNGG 3 cut(s) 51, 1140, 1182
BssMI GATC 8 cut(s) 18, 280, 389, 604, 613, 925, 967, 1057
BssT1I CCWWGG 1 cut(s) 1182
Bst2UI CCWGG 1 cut(s) 218
Bst4CI ACNGT 2 cut(s) 643, 959
Bst6I CTCTTC 4 cut(s) 54, 274, 881, 1215
BstAUI TGTACA 1 cut(s) 567
BstDEI CTNAG 1 cut(s) 940
BstDSI CCRYGG 1 cut(s) 1182
BstENI CCTNNNNNAGG 1 cut(s) 534
BstF5I GGATG 3 cut(s) 616, 770, 1088
BstKTI GATC 8 cut(s) 21, 283, 392, 607, 616, 928, 970, 1060
BstMBI GATC 8 cut(s) 18, 280, 389, 604, 613, 925, 967, 1057
BstNI CCWGG 1 cut(s) 218
BstSCI CCNGG 2 cut(s) 50, 216
BstSFI CTRYAG 1 cut(s) 102
BstSLI GKGCMC 1 cut(s) 1099
BstV1I GCAGC 1 cut(s) 20
BstV2I GAAGAC 3 cut(s) 224, 637, 1235
BstX2I RGATCY 1 cut(s) 389
BstXI CCANNNNNNTGG 1 cut(s) 73
BstYI RGATCY 1 cut(s) 389
BsuRI GGCC 4 cut(s) 65, 815, 1009, 1181
BtgI CCRYGG 1 cut(s) 1182
BtgZI GCGATG 1 cut(s) 470
BtsCI GGATG 3 cut(s) 616, 770, 1088
BtsI GCAGTG 1 cut(s) 604
BtsIMutI CAGTG 2 cut(s) 604, 868
Csp6I GTAC 2 cut(s) 568, 960
CviAII CATG 5 cut(s) 550, 702, 806, 894, 1183
CviQI GTAC 2 cut(s) 568, 960
DdeI CTNAG 1 cut(s) 940
DpnI GATC 8 cut(s) 20, 282, 391, 606, 615, 927, 969, 1059
DpnII GATC 8 cut(s) 18, 280, 389, 604, 613, 925, 967, 1057
EaeI YGGCCR 2 cut(s) 1007, 1179
Eam1104I CTCTTC 4 cut(s) 54, 274, 881, 1215
EarI CTCTTC 4 cut(s) 54, 274, 881, 1215
Eco130I CCWWGG 1 cut(s) 1182
Eco147I AGGCCT 1 cut(s) 815
EcoNI CCTNNNNNAGG 1 cut(s) 534
EcoRII CCWGG 1 cut(s) 216
EcoT14I CCWWGG 1 cut(s) 1182
EcoT22I ATGCAT 1 cut(s) 555
ErhI CCWWGG 1 cut(s) 1182
FaeI CATG 5 cut(s) 553, 705, 809, 897, 1186
FatI CATG 5 cut(s) 549, 701, 805, 893, 1182
FbaI TGATCA 2 cut(s) 280, 967
Fnu4HI GCNGC 1 cut(s) 9
FokI GGATG 3 cut(s) 623, 757, 1095
Fsp4HI GCNGC 1 cut(s) 9
FspBI CTAG 3 cut(s) 122, 201, 393
GluI GCNGC 1 cut(s) 9
GsaI CCCAGC 1 cut(s) 464
HaeIII GGCC 4 cut(s) 65, 815, 1009, 1181
HapII CCGG 3 cut(s) 51, 608, 1109
Hin1II CATG 5 cut(s) 553, 705, 809, 897, 1186
HinfI GANTC 4 cut(s) 297, 680, 974, 999
HpaII CCGG 3 cut(s) 51, 608, 1109
HphI GGTGA 3 cut(s) 40, 640, 944
Hpy166II GTNNAC 4 cut(s) 568, 803, 955, 1097
Hpy188I TCNGA 4 cut(s) 285, 979, 1004, 1242
Hpy188III TCNNGA 4 cut(s) 425, 608, 684, 971
Hpy8I GTNNAC 4 cut(s) 568, 803, 955, 1097
Hpy99I CGWCG 2 cut(s) 317, 1015
HpyAV CCTTC 4 cut(s) 672, 826, 1016, 1198
HpyCH4III ACNGT 2 cut(s) 643, 959
HpyCH4V TGCA 7 cut(s) 8, 365, 553, 659, 698, 911, 1097
HpyF3I CTNAG 1 cut(s) 940
Hsp92II CATG 5 cut(s) 553, 705, 809, 897, 1186
Kpn2I TCCGGA 1 cut(s) 607
Ksp22I TGATCA 2 cut(s) 280, 967
Kzo9I GATC 8 cut(s) 18, 280, 389, 604, 613, 925, 967, 1057
LmnI GCTCC 1 cut(s) 635
Lsp1109I GCAGC 1 cut(s) 20
LweI GCATC 2 cut(s) 352, 707
MaeI CTAG 3 cut(s) 122, 201, 393
MaeIII GTNAC 3 cut(s) 46, 863, 932
MalI GATC 8 cut(s) 20, 282, 391, 606, 615, 927, 969, 1059
MboI GATC 8 cut(s) 18, 280, 389, 604, 613, 925, 967, 1057
MflI RGATCY 1 cut(s) 389
MhlI GDGCHC 1 cut(s) 1099
MlsI TGGCCA 1 cut(s) 1181
MluCI AATT 8 cut(s) 91, 129, 473, 687, 901, 1061, 1174, 1252
MluNI TGGCCA 1 cut(s) 1181
MlyI GAGTC 1 cut(s) 689
Mox20I TGGCCA 1 cut(s) 1181
Mph1103I ATGCAT 1 cut(s) 555
MroI TCCGGA 1 cut(s) 607
MroXI GAANNNNTTC 1 cut(s) 117
MscI TGGCCA 1 cut(s) 1181
MseI TTAA 1 cut(s) 38
MslI CAYNNNNRTG 1 cut(s) 563
Msp20I TGGCCA 1 cut(s) 1181
MspA1I CMGCKG 2 cut(s) 11, 293
MspI CCGG 3 cut(s) 51, 608, 1109
MspR9I CCNGG 2 cut(s) 52, 218
Mva1269I GAATGC 4 cut(s) 10, 196, 520, 661
MvaI CCWGG 1 cut(s) 218
NciI CCSGG 1 cut(s) 52
NcoI CCATGG 1 cut(s) 1182
NdeII GATC 8 cut(s) 18, 280, 389, 604, 613, 925, 967, 1057
NlaIII CATG 5 cut(s) 553, 705, 809, 897, 1186
NlaIV GGNNCC 2 cut(s) 458, 637
NmuCI GTSAC 3 cut(s) 46, 863, 932
NsiI ATGCAT 1 cut(s) 555
OliI CACNNNNGTG 1 cut(s) 563
PceI AGGCCT 1 cut(s) 815
PctI GAATGC 4 cut(s) 10, 196, 520, 661
PdmI GAANNNNTTC 1 cut(s) 117
PfeI GAWTC 3 cut(s) 297, 974, 999
PflFI GACNNNGTC 1 cut(s) 228
PfoI TCCNGGA 1 cut(s) 216
PkrI GCNGC 1 cut(s) 10
PleI GAGTC 1 cut(s) 688
PpsI GAGTC 1 cut(s) 688
Psp6I CCWGG 1 cut(s) 216
PspFI CCCAGC 1 cut(s) 460
PspGI CCWGG 1 cut(s) 216
PspN4I GGNNCC 2 cut(s) 458, 637
PsuI RGATCY 1 cut(s) 389
PsyI GACNNNGTC 1 cut(s) 228
PvuII CAGCTG 2 cut(s) 11, 293
RsaI GTAC 2 cut(s) 569, 961
RsaNI GTAC 2 cut(s) 568, 960
RseI CAYNNNNRTG 1 cut(s) 563
SaqAI TTAA 1 cut(s) 38
SatI GCNGC 1 cut(s) 9
Sau3AI GATC 8 cut(s) 18, 280, 389, 604, 613, 925, 967, 1057
ScaI AGTACT 1 cut(s) 961
SchI GAGTC 1 cut(s) 689
ScrFI CCNGG 2 cut(s) 52, 218
SduI GDGCHC 1 cut(s) 1099
SfaNI GCATC 2 cut(s) 352, 707
SfcI CTRYAG 1 cut(s) 102
SmiMI CAYNNNNRTG 1 cut(s) 563
SmlI CTYRAG 2 cut(s) 149, 509
SmoI CTYRAG 2 cut(s) 149, 509
Sse9I AATT 8 cut(s) 91, 129, 473, 687, 901, 1061, 1174, 1252
SseBI AGGCCT 1 cut(s) 815
SspMI CTAG 3 cut(s) 122, 201, 393
StuI AGGCCT 1 cut(s) 815
StyD4I CCNGG 2 cut(s) 50, 216
StyI CCWWGG 1 cut(s) 1182
TaaI ACNGT 2 cut(s) 643, 959
TaqI TCGA 2 cut(s) 179, 683
TasI AATT 8 cut(s) 91, 129, 473, 687, 901, 1061, 1174, 1252
TatI WGTACW 2 cut(s) 567, 959
TfiI GAWTC 3 cut(s) 297, 974, 999
Tru1I TTAA 1 cut(s) 38
Tru9I TTAA 1 cut(s) 38
TscAI CASTG 2 cut(s) 604, 868
TseFI GTSAC 3 cut(s) 46, 863, 932
TseI GCWGC 1 cut(s) 8
Tsp45I GTSAC 3 cut(s) 46, 863, 932
TspDTI ATGAA 7 cut(s) 17, 126, 198, 538, 882, 1119, 1230
TspRI CASTG 2 cut(s) 604, 868
Tth111I GACNNNGTC 1 cut(s) 228
VneI GTGCAC 1 cut(s) 1095
XagI CCTNNNNNAGG 1 cut(s) 534
XapI RAATTY 2 cut(s) 129, 901
XmnI GAANNNNTTC 1 cut(s) 117
XspI CTAG 3 cut(s) 122, 201, 393
ZrmI AGTACT 1 cut(s) 961
Zsp2I ATGCAT 1 cut(s) 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.