Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000369

Physical Location & Seq

Genomic Coordinates Forward (+)

58711796 .. 58712680

Gene Structure 885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0461000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGCCCCAAACAGAGAAAACCACATGGGTTCCTACTCCAAGAGCAAGCCACCAACACTATCAATGGGAGGTAGTACTATACAAAGAACCAAATCCGACATTTCGATAGAAGTTCTGAGCAAAGAGTTAGCAGCCATCGACATTCATGAAGACAACGAGAAGCTGCTGCCTCCCATATCAGAAGTCGAAGAGGCCAAATGCGAGTGCTGTGGCATGTCCGAGGAGTGCACGGCCGAGTACATAAACCGCGTGCGAAACCAGTTTTCAGGGAAGCTGATTTGCGGGCTGTGCGCTGAAGCTGTGAATGGAGAGATGGACAAGAACGGAGGGAAGAGGGAAGAGGCTGTGAATGAGCATATGAGTGCTTGTGTGAAGTTTAATAGGCTGGAGAGGACAAACCCTGTTCTGTACCAAGCTGAGGCCATCAAAGAGATTTTGAGGAAGAGTAGTTCTACTAGCAGGTCCAAATCTATGAGTTACAAGAGTGGTGTTCAGAAGAACAATGGTGGCCTGGCGAGGAGCTCCAGTTGTATTCCGGCTATCACCACCGAAGAAGTTGATGAGCCGCTACACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0006139 GO:0006351 GO:0006366 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019899 GO:0019904 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0046483 GO:0070063 GO:0071704 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD zf-RING_2

Protein Analysis

191

Amino Acids

20.97

Weight (kDa)

5.89

Isoelectric Point (pI)

56.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1677	PF07911	62 - 151	1.3e-34	Protein of unknown function (DUF1677)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000369)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica	MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica	Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis	pycom17g23320
rosa_chinensis	RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata	RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora	Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa	Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha	Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana	Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	450
AccII	CGCG	1 cut(s)	249
AciI	CCGC	3 cut(s)	247, 282, 566
AcoI	YGGCCR	1 cut(s)	231
AcuI	CTGAAG	1 cut(s)	315
AfaI	GTAC	3 cut(s)	76, 239, 410
AfiI	CCNNNNNNNGG	1 cut(s)	418
AjnI	CCWGG	1 cut(s)	510
AloI	GAACNNNNNNTCC	2 cut(s)	433, 465
AluBI	AGCT	5 cut(s)	163, 274, 299, 416, 522
AluI	AGCT	5 cut(s)	163, 274, 299, 416, 522
Alw21I	GWGCWC	2 cut(s)	230, 524
Alw44I	GTGCAC	1 cut(s)	226
AoxI	GGCC	5 cut(s)	3, 192, 231, 420, 508
ApaLI	GTGCAC	1 cut(s)	226
ApeKI	GCWGC	3 cut(s)	131, 163, 166
AspLEI	GCGC	1 cut(s)	293
AspS9I	GGNCC	2 cut(s)	4, 462
AsuHPI	GGTGA	1 cut(s)	535
AvaII	GGWCC	1 cut(s)	462
BaeGI	GKGCMC	1 cut(s)	230
BanII	GRGCYC	1 cut(s)	524
BbsI	GAAGAC	1 cut(s)	156
Bbv12I	GWGCWC	2 cut(s)	230, 524
BbvCI	CCTCAGC	1 cut(s)	417
BbvI	GCAGC	3 cut(s)	143, 150, 153
BccI	CCATC	3 cut(s)	143, 307, 431
BceAI	ACGGC	1 cut(s)	246
BciT130I	CCWGG	1 cut(s)	512
BfaI	CTAG	2 cut(s)	456, 574
BfuAI	ACCTGC	1 cut(s)	450
BisI	GCNGC	4 cut(s)	132, 164, 167, 566
BlsI	GCNGC	4 cut(s)	133, 165, 168, 567
BmcAI	AGTACT	1 cut(s)	76
Bme1390I	CCNGG	1 cut(s)	512
Bme18I	GGWCC	1 cut(s)	462
BmgT120I	GGNCC	2 cut(s)	4, 462
BmiI	GGNNCC	2 cut(s)	6, 31
BmrFI	CCNGG	1 cut(s)	512
BpiI	GAAGAC	1 cut(s)	156
BpmI	CTGGAG	2 cut(s)	407, 508
Bpu10I	CCTNAGC	1 cut(s)	417
BsaJI	CCNNGG	1 cut(s)	219
BsaXI	ACNNNNNCTCC	2 cut(s)	511, 541
Bsc4I	CCNNNNNNNGG	1 cut(s)	418
Bse1I	ACTGG	2 cut(s)	259, 525
BseBI	CCWGG	1 cut(s)	512
BseDI	CCNNGG	1 cut(s)	219
BseLI	CCNNNNNNNGG	1 cut(s)	418
BseMII	CTCAG	2 cut(s)	107, 408
BseNI	ACTGG	2 cut(s)	259, 525
BseRI	GAGGAG	2 cut(s)	236, 532
BseSI	GKGCMC	1 cut(s)	230
BseX3I	CGGCCG	1 cut(s)	231
BseXI	GCAGC	3 cut(s)	143, 150, 153
Bsh1236I	CGCG	1 cut(s)	249
Bsh1285I	CGRYCG	1 cut(s)	234
BshFI	GGCC	5 cut(s)	5, 194, 233, 422, 510
BsiEI	CGRYCG	1 cut(s)	234
BsiHKAI	GWGCWC	2 cut(s)	230, 524
BsiSI	CCGG	1 cut(s)	536
BslI	CCNNNNNNNGG	1 cut(s)	418
BsnI	GGCC	5 cut(s)	5, 194, 233, 422, 510
Bsp1286I	GDGCHC	2 cut(s)	230, 524
BspACI	CCGC	3 cut(s)	247, 282, 566
BspANI	GGCC	5 cut(s)	5, 194, 233, 422, 510
BspCNI	CTCAG	2 cut(s)	108, 409
BspFNI	CGCG	1 cut(s)	249
BspHI	TCATGA	1 cut(s)	145
BspLI	GGNNCC	2 cut(s)	6, 31
BspMI	ACCTGC	1 cut(s)	450
BsrI	ACTGG	2 cut(s)	259, 525
BssECI	CCNNGG	1 cut(s)	219
Bst2UI	CCWGG	1 cut(s)	512
Bst6I	CTCTTC	4 cut(s)	183, 326, 333, 437
BstC8I	GCNNGC	3 cut(s)	47, 251, 284
BstDEI	CTNAG	2 cut(s)	116, 417
BstFNI	CGCG	1 cut(s)	249
BstHHI	GCGC	1 cut(s)	293
BstMCI	CGRYCG	1 cut(s)	234
BstMWI	GCNNNNNNNGC	1 cut(s)	288
BstNI	CCWGG	1 cut(s)	512
BstNSI	RCATGY	1 cut(s)	217
BstSCI	CCNGG	1 cut(s)	510
BstSLI	GKGCMC	1 cut(s)	230
BstUI	CGCG	1 cut(s)	249
BstV1I	GCAGC	3 cut(s)	143, 150, 153
BstV2I	GAAGAC	1 cut(s)	156
BstZI	CGGCCG	1 cut(s)	231
BsuRI	GGCC	5 cut(s)	5, 194, 233, 422, 510
BveI	ACCTGC	1 cut(s)	450
Cac8I	GCNNGC	3 cut(s)	47, 251, 284
CciI	TCATGA	1 cut(s)	145
CfoI	GCGC	1 cut(s)	293
Cfr13I	GGNCC	2 cut(s)	4, 462
Csp6I	GTAC	3 cut(s)	75, 238, 409
CviAII	CATG	3 cut(s)	25, 146, 214
CviQI	GTAC	3 cut(s)	75, 238, 409
DdeI	CTNAG	2 cut(s)	116, 417
EaeI	YGGCCR	1 cut(s)	231
EagI	CGGCCG	1 cut(s)	231
Eam1104I	CTCTTC	4 cut(s)	183, 326, 333, 437
EarI	CTCTTC	4 cut(s)	183, 326, 333, 437
Ecl136II	GAGCTC	1 cut(s)	522
EclXI	CGGCCG	1 cut(s)	231
Eco24I	GRGCYC	1 cut(s)	524
Eco47I	GGWCC	1 cut(s)	462
Eco52I	CGGCCG	1 cut(s)	231
Eco53kI	GAGCTC	1 cut(s)	522
Eco57I	CTGAAG	1 cut(s)	315
EcoICRI	GAGCTC	1 cut(s)	522
EcoRII	CCWGG	1 cut(s)	510
EcoT38I	GRGCYC	1 cut(s)	524
FaeI	CATG	3 cut(s)	28, 149, 217
FaiI	YATR	9 cut(s)	26, 80, 147, 176, 215, 242, 357, 359, 473
FatI	CATG	3 cut(s)	24, 145, 213
FauI	CCCGC	1 cut(s)	275
FauNDI	CATATG	1 cut(s)	357
Fnu4HI	GCNGC	4 cut(s)	132, 164, 167, 566
FriOI	GRGCYC	1 cut(s)	524
Fsp4HI	GCNGC	4 cut(s)	132, 164, 167, 566
FspBI	CTAG	2 cut(s)	456, 574
GlaI	GCGC	1 cut(s)	292
GluI	GCNGC	4 cut(s)	132, 164, 167, 566
GsuI	CTGGAG	2 cut(s)	407, 508
HaeIII	GGCC	5 cut(s)	5, 194, 233, 422, 510
HapII	CCGG	1 cut(s)	536
HhaI	GCGC	1 cut(s)	293
Hin1II	CATG	3 cut(s)	28, 149, 217
Hin6I	GCGC	1 cut(s)	291
HinP1I	GCGC	1 cut(s)	291
HpaII	CCGG	1 cut(s)	536
HphI	GGTGA	1 cut(s)	535
Hpy166II	GTNNAC	1 cut(s)	228
Hpy188I	TCNGA	5 cut(s)	97, 117, 181, 220, 495
Hpy188III	TCNNGA	1 cut(s)	146
Hpy8I	GTNNAC	1 cut(s)	228
HpyCH4V	TGCA	1 cut(s)	228
HpyF10VI	GCNNNNNNNGC	1 cut(s)	288
HpyF3I	CTNAG	2 cut(s)	116, 417
Hsp92II	CATG	3 cut(s)	28, 149, 217
HspAI	GCGC	1 cut(s)	291
LmnI	GCTCC	2 cut(s)	519, 527
LpnPI	CCDG	9 cut(s)	252, 272, 371, 414, 445, 497, 524, 538, 549
Lsp1109I	GCAGC	3 cut(s)	143, 150, 153
MaeI	CTAG	2 cut(s)	456, 574
MaeIII	GTNAC	1 cut(s)	476
MboII	GAAGA	7 cut(s)	161, 200, 343, 350, 454, 508, 563
MhlI	GDGCHC	2 cut(s)	230, 524
MmeI	TCCRAC	1 cut(s)	120
MseI	TTAA	1 cut(s)	378
MslI	CAYNNNNRTG	1 cut(s)	360
MspI	CCGG	1 cut(s)	536
MspR9I	CCNGG	1 cut(s)	512
MvaI	CCWGG	1 cut(s)	512
MvnI	CGCG	1 cut(s)	249
MwoI	GCNNNNNNNGC	1 cut(s)	288
NdeI	CATATG	1 cut(s)	357
NlaIII	CATG	3 cut(s)	28, 149, 217
NlaIV	GGNNCC	2 cut(s)	6, 31
NmeAIII	GCCGAG	1 cut(s)	259
NspI	RCATGY	1 cut(s)	217
PagI	TCATGA	1 cut(s)	145
PkrI	GCNGC	4 cut(s)	133, 165, 168, 567
Psp124BI	GAGCTC	1 cut(s)	524
Psp6I	CCWGG	1 cut(s)	510
PspGI	CCWGG	1 cut(s)	510
PspN4I	GGNNCC	2 cut(s)	6, 31
PspPI	GGNCC	2 cut(s)	4, 462
RsaI	GTAC	3 cut(s)	76, 239, 410
RsaNI	GTAC	3 cut(s)	75, 238, 409
RseI	CAYNNNNRTG	1 cut(s)	360
SacI	GAGCTC	1 cut(s)	524
SaqAI	TTAA	1 cut(s)	378
SatI	GCNGC	4 cut(s)	132, 164, 167, 566
Sau96I	GGNCC	2 cut(s)	4, 462
ScaI	AGTACT	1 cut(s)	76
ScrFI	CCNGG	1 cut(s)	512
SduI	GDGCHC	2 cut(s)	230, 524
SetI	ASST	7 cut(s)	73, 165, 276, 301, 418, 464, 524
SinI	GGWCC	1 cut(s)	462
SmiMI	CAYNNNNRTG	1 cut(s)	360
SsiI	CCGC	3 cut(s)	247, 282, 566
SspMI	CTAG	2 cut(s)	456, 574
SstI	GAGCTC	1 cut(s)	524
StyD4I	CCNGG	1 cut(s)	510
TaqI	TCGA	3 cut(s)	104, 138, 186
TatI	WGTACW	2 cut(s)	74, 237
TauI	GCSGC	1 cut(s)	568
Tru1I	TTAA	1 cut(s)	378
Tru9I	TTAA	1 cut(s)	378
TseI	GCWGC	3 cut(s)	131, 163, 166
TspDTI	ATGAA	2 cut(s)	134, 162
TspGWI	ACGGA	1 cut(s)	339
VneI	GTGCAC	1 cut(s)	226
VpaK11BI	GGWCC	1 cut(s)	462
XceI	RCATGY	1 cut(s)	217
XspI	CTAG	2 cut(s)	456, 574
ZrmI	AGTACT	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.