Rroxscaffold_7G00181180

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000369
Physical Location & Seq
Reverse (-)
20407120 .. 20407751
632 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00181180.1

Sequence Viewer

Length: 450 bp
ATGATTCGAACCAACTTACTTTTCAAGCCAGAGTGTTCAATCCTAAATCCTAAGAGAAATTCTTGGAGAGTAGTTGAACCGGAACTTGAACTTACATCATGTAGAAGGTTTAATACTCACTCTATTACTGTGAATGGAGTGCTGTATTGGTTGGTAGAGAAACAAACAGCTGGGGTGGCTCTCGTTTCGTTCAGTTTACATGATGAGGCCTTCAAGGATACATGGAAACCACTACCAGGAGAAATAGTACGCTATCTTACTGAGGGAGTTTGGAAGAATCAACATGTTTTCACCAAAAATGGAGATGAAGCTGGTGCAAATAATGATGAACCGGGGAACCTGTTTTTGTATGACCCTATAACCCAGACATTAAGTAAGGTACAAGGAGAAAGAAACGTTTACTTTTTTTCAGTAGTAGGTTATGCGGAGAGCAAAGTCCAGCTAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

17.07

Weight (kDa)

5.95

Isoelectric Point (pI)

23.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 10 - 75 8.6e-07 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis pycom17g23320
rosa_chinensis RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 425
AclI AACGTT 1 cut(s) 396
AcsI RAATTY 1 cut(s) 58
AfaI GTAC 2 cut(s) 249, 381
AfiI CCNNNNNNNGG 1 cut(s) 236
AflIII ACRYGT 1 cut(s) 283
AgsI TTSAA 5 cut(s) 25, 39, 77, 89, 214
AjnI CCWGG 1 cut(s) 235
AjuI GAANNNNNNNTTGG 1 cut(s) 37
AluBI AGCT 3 cut(s) 170, 311, 442
AluI AGCT 3 cut(s) 170, 311, 442
AoxI GGCC 1 cut(s) 207
ApoI RAATTY 1 cut(s) 58
AsuC2I CCSGG 1 cut(s) 333
AsuHPI GGTGA 1 cut(s) 283
AsuII TTCGAA 1 cut(s) 7
BarI GAAGNNNNNNTAC 2 cut(s) 97, 129
BciT130I CCWGG 1 cut(s) 237
BciVI GTATCC 1 cut(s) 211
BcnI CCSGG 1 cut(s) 333
BfaI CTAG 1 cut(s) 443
BfuI GTATCC 1 cut(s) 211
Bme1390I CCNGG 2 cut(s) 237, 333
BmiI GGNNCC 1 cut(s) 338
BmrFI CCNGG 2 cut(s) 237, 333
Bpu14I TTCGAA 1 cut(s) 7
BpuMI CCSGG 1 cut(s) 333
BsaJI CCNNGG 1 cut(s) 332
BsaWI WCCGGW 1 cut(s) 79
BsaXI ACNNNNNCTCC 2 cut(s) 231, 261
Bsc4I CCNNNNNNNGG 1 cut(s) 236
BseBI CCWGG 1 cut(s) 237
BseDI CCNNGG 1 cut(s) 332
BseLI CCNNNNNNNGG 1 cut(s) 236
BseMII CTCAG 1 cut(s) 252
BseYI CCCAGC 1 cut(s) 170
BshFI GGCC 1 cut(s) 209
BsiSI CCGG 2 cut(s) 80, 332
BslI CCNNNNNNNGG 1 cut(s) 236
BsnI GGCC 1 cut(s) 209
Bsp119I TTCGAA 1 cut(s) 7
BspACI CCGC 1 cut(s) 425
BspANI GGCC 1 cut(s) 209
BspCNI CTCAG 1 cut(s) 253
BspLI GGNNCC 1 cut(s) 338
BspT104I TTCGAA 1 cut(s) 7
BssECI CCNNGG 1 cut(s) 332
Bst2UI CCWGG 1 cut(s) 237
Bst4CI ACNGT 1 cut(s) 130
BstBI TTCGAA 1 cut(s) 7
BstDEI CTNAG 2 cut(s) 51, 261
BstMWI GCNNNNNNNGC 1 cut(s) 176
BstNI CCWGG 1 cut(s) 237
BstNSI RCATGY 1 cut(s) 287
BstSCI CCNGG 2 cut(s) 235, 331
BsuI GTATCC 1 cut(s) 211
BsuRI GGCC 1 cut(s) 209
Csp6I GTAC 2 cut(s) 248, 380
CviAII CATG 4 cut(s) 99, 200, 222, 284
CviJI RGCY 6 cut(s) 28, 170, 179, 209, 311, 442
CviKI_1 RGCY 6 cut(s) 28, 170, 179, 209, 311, 442
CviQI GTAC 2 cut(s) 248, 380
DdeI CTNAG 2 cut(s) 51, 261
Eco147I AGGCCT 1 cut(s) 209
EcoRII CCWGG 1 cut(s) 235
FaeI CATG 4 cut(s) 102, 203, 225, 287
FaiI YATR 7 cut(s) 100, 201, 223, 285, 351, 359, 423
FatI CATG 4 cut(s) 98, 199, 221, 283
FspBI CTAG 1 cut(s) 443
GsaI CCCAGC 1 cut(s) 174
HaeIII GGCC 1 cut(s) 209
HapII CCGG 2 cut(s) 80, 332
Hin1II CATG 4 cut(s) 102, 203, 225, 287
HinfI GANTC 2 cut(s) 4, 277
HpaII CCGG 2 cut(s) 80, 332
HphI GGTGA 1 cut(s) 283
Hpy166II GTNNAC 2 cut(s) 197, 400
Hpy8I GTNNAC 2 cut(s) 197, 400
HpyAV CCTTC 2 cut(s) 99, 220
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4IV ACGT 1 cut(s) 396
HpyCH4V TGCA 1 cut(s) 317
HpyF10VI GCNNNNNNNGC 1 cut(s) 176
HpyF3I CTNAG 2 cut(s) 51, 261
HpySE526I ACGT 1 cut(s) 396
Hsp92II CATG 4 cut(s) 102, 203, 225, 287
LpnPI CCDG 9 cut(s) 42, 93, 156, 222, 249, 297, 345, 353, 377
MaeI CTAG 1 cut(s) 443
MaeII ACGT 1 cut(s) 396
MboII GAAGA 1 cut(s) 286
MluCI AATT 1 cut(s) 58
MnlI CCTC 2 cut(s) 199, 256
MseI TTAA 2 cut(s) 111, 371
MspA1I CMGCKG 1 cut(s) 170
MspI CCGG 2 cut(s) 80, 332
MspR9I CCNGG 2 cut(s) 237, 333
MvaI CCWGG 1 cut(s) 237
MwoI GCNNNNNNNGC 1 cut(s) 176
NciI CCSGG 1 cut(s) 333
NlaIII CATG 4 cut(s) 102, 203, 225, 287
NlaIV GGNNCC 1 cut(s) 338
NspI RCATGY 1 cut(s) 287
NspV TTCGAA 1 cut(s) 7
PceI AGGCCT 1 cut(s) 209
PciI ACATGT 1 cut(s) 283
PfeI GAWTC 2 cut(s) 4, 277
PscI ACATGT 1 cut(s) 283
Psp1406I AACGTT 1 cut(s) 396
Psp6I CCWGG 1 cut(s) 235
PspFI CCCAGC 1 cut(s) 170
PspGI CCWGG 1 cut(s) 235
PspN4I GGNNCC 1 cut(s) 338
PvuII CAGCTG 1 cut(s) 170
RsaI GTAC 2 cut(s) 249, 381
RsaNI GTAC 2 cut(s) 248, 380
SaqAI TTAA 2 cut(s) 111, 371
ScrFI CCNGG 2 cut(s) 237, 333
SetI ASST 8 cut(s) 110, 172, 313, 342, 381, 399, 421, 444
SfuI TTCGAA 1 cut(s) 7
Sse9I AATT 1 cut(s) 58
SseBI AGGCCT 1 cut(s) 209
SsiI CCGC 1 cut(s) 425
SspMI CTAG 1 cut(s) 443
StuI AGGCCT 1 cut(s) 209
StyD4I CCNGG 2 cut(s) 235, 331
TaaI ACNGT 1 cut(s) 130
TaiI ACGT 1 cut(s) 399
TaqI TCGA 1 cut(s) 7
TasI AATT 1 cut(s) 58
TfiI GAWTC 2 cut(s) 4, 277
Tru1I TTAA 2 cut(s) 111, 371
Tru9I TTAA 2 cut(s) 111, 371
TspDTI ATGAA 2 cut(s) 321, 342
XapI RAATTY 1 cut(s) 58
XceI RCATGY 1 cut(s) 287
XspI CTAG 1 cut(s) 443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.