Rh6DG299200

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000369
Physical Location & Seq
Reverse (-)
50045755 .. 50046429
675 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG299200.1

Sequence Viewer

Length: 675 bp
ATGGAAACTGGAGCTAGTTTTTTTGCTATAGCTGATGAAAGTATTCTAGTAGAAATTCTCTTAAGATTGCCTCTCAAGTCTATATGTAGGTTTAGGTGTGTATCAAAAGAGTGGGATTATCTCACCAAAACTAGTAATTTCCTGGACAGACATCGTCTTCACAGCTCTCGCCGTCTTCTCCTCATCTCCTCATCCTCTCTTGCTGCCGGAATTGGTAATAAGAAAGTTGGAATCTCATTACTTGCTGACGAAAAAACGGCAGTTTCAAGTTTGAGTGTACCTTTCCTCCCCAACGATGCAAGATGGGATTTAAAATTTGTGGGATCTAGTAATGGGTTAGTTTGTTGCGTTACCTTGCTTAAGGGTACTCGAATAGCCACAGTAGTATGGAACCCAGCAACAGACCAATTTAATTATTTTCCTATTGTTTTGGAGAAAAGAGTTGAGAATGCTACTTATTACTATCGTCTGATTGTAGGTTTTGATTTCATGCATAGCATTAGTGCATACAAGTTGGTGACAGTTCGCCCTTATGTTAATCCCATTAATGATCCGAACCAACTTACTTTTCAAGCCAGAGTGTTCAATCCTAATAGAAATTCTTGGAGAGTAGTTGAACCGATGAACCGGAACTTGGACTTACATCATGTAAAGGGTTTAATACTCACTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

224

Amino Acids

25.47

Weight (kDa)

9.56

Isoelectric Point (pI)

28.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 15 - 47 3e-06 F-box domain
FBA_1 PF07734 101 - 220 3.4e-08 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis pycom17g23320
rosa_chinensis RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 331, 545
AcsI RAATTY 3 cut(s) 54, 314, 598
AfaI GTAC 2 cut(s) 279, 367
AfiI CCNNNNNNNGG 1 cut(s) 634
AflII CTTAAG 2 cut(s) 61, 359
AgsI TTSAA 4 cut(s) 267, 572, 586, 617
AhlI ACTAGT 1 cut(s) 131
AjnI CCWGG 1 cut(s) 141
AjuI GAANNNNNNNTTGG 4 cut(s) 552, 584, 617, 649
AluBI AGCT 3 cut(s) 14, 32, 165
AluI AGCT 3 cut(s) 14, 32, 165
AlwI GGATC 2 cut(s) 331, 545
ApeKI GCWGC 1 cut(s) 203
ApoI RAATTY 3 cut(s) 54, 314, 598
AseI ATTAAT 1 cut(s) 546
Asp700I GAANNNNTTC 1 cut(s) 42
AsuHPI GGTGA 2 cut(s) 115, 529
BbsI GAAGAC 2 cut(s) 149, 167
BbvI GCAGC 1 cut(s) 190
BccI CCATC 1 cut(s) 297
BceAI ACGGC 2 cut(s) 156, 273
BciT130I CCWGG 1 cut(s) 143
BcuI ACTAGT 1 cut(s) 131
BfaI CTAG 4 cut(s) 15, 47, 132, 327
BfmI CTRYAG 1 cut(s) 27
BfrI CTTAAG 2 cut(s) 61, 359
BisI GCNGC 1 cut(s) 204
BlsI GCNGC 1 cut(s) 205
Bme1390I CCNGG 1 cut(s) 143
BmiI GGNNCC 1 cut(s) 392
BmrFI CCNGG 1 cut(s) 143
BmsI GCATC 1 cut(s) 286
BpiI GAAGAC 2 cut(s) 149, 167
BpmI CTGGAG 1 cut(s) 30
BpuEI CTTGAG 1 cut(s) 59
BsaWI WCCGGW 1 cut(s) 627
BsaXI ACNNNNNCTCC 2 cut(s) 270, 300
Bsc4I CCNNNNNNNGG 1 cut(s) 634
Bse1I ACTGG 1 cut(s) 13
BseBI CCWGG 1 cut(s) 143
BseGI GGATG 1 cut(s) 191
BseLI CCNNNNNNNGG 1 cut(s) 634
BseNI ACTGG 1 cut(s) 13
BseRI GAGGAG 2 cut(s) 170, 178
BseXI GCAGC 1 cut(s) 190
BseYI CCCAGC 1 cut(s) 394
BsiSI CCGG 2 cut(s) 207, 628
BslI CCNNNNNNNGG 1 cut(s) 634
BsmI GAATGC 1 cut(s) 454
Bsp143I GATC 2 cut(s) 323, 550
BspLI GGNNCC 1 cut(s) 392
BspPI GGATC 2 cut(s) 331, 545
BspTI CTTAAG 2 cut(s) 61, 359
BsrI ACTGG 1 cut(s) 13
BssMI GATC 2 cut(s) 323, 550
Bst2UI CCWGG 1 cut(s) 143
Bst4CI ACNGT 2 cut(s) 382, 523
BstAFI CTTAAG 2 cut(s) 61, 359
BstF5I GGATG 1 cut(s) 191
BstKTI GATC 2 cut(s) 326, 553
BstMBI GATC 2 cut(s) 323, 550
BstNI CCWGG 1 cut(s) 143
BstSCI CCNGG 1 cut(s) 141
BstSFI CTRYAG 1 cut(s) 27
BstV1I GCAGC 1 cut(s) 190
BstV2I GAAGAC 2 cut(s) 149, 167
BstX2I RGATCY 1 cut(s) 323
BstYI RGATCY 1 cut(s) 323
BtsCI GGATG 1 cut(s) 191
Csp6I GTAC 2 cut(s) 278, 366
CviAII CATG 2 cut(s) 490, 647
CviJI RGCY 5 cut(s) 14, 32, 165, 377, 575
CviKI_1 RGCY 5 cut(s) 14, 32, 165, 377, 575
CviQI GTAC 2 cut(s) 278, 366
DpnI GATC 2 cut(s) 325, 552
DpnII GATC 2 cut(s) 323, 550
DraI TTTAAA 1 cut(s) 312
EcoRII CCWGG 1 cut(s) 141
EcoT22I ATGCAT 1 cut(s) 495
FaeI CATG 2 cut(s) 493, 650
FaiI YATR 9 cut(s) 29, 83, 85, 388, 491, 495, 508, 534, 648
FatI CATG 2 cut(s) 489, 646
Fnu4HI GCNGC 1 cut(s) 204
FokI GGATG 1 cut(s) 178
Fsp4HI GCNGC 1 cut(s) 204
FspBI CTAG 4 cut(s) 15, 47, 132, 327
GluI GCNGC 1 cut(s) 204
GsaI CCCAGC 1 cut(s) 398
GsuI CTGGAG 1 cut(s) 30
HapII CCGG 2 cut(s) 207, 628
Hin1II CATG 2 cut(s) 493, 650
HinfI GANTC 1 cut(s) 231
HpaII CCGG 2 cut(s) 207, 628
HphI GGTGA 2 cut(s) 115, 529
Hpy166II GTNNAC 1 cut(s) 278
Hpy188I TCNGA 2 cut(s) 471, 555
Hpy8I GTNNAC 1 cut(s) 278
HpyCH4III ACNGT 2 cut(s) 382, 523
HpyCH4V TGCA 3 cut(s) 299, 493, 506
Hsp92II CATG 2 cut(s) 493, 650
Kzo9I GATC 2 cut(s) 323, 550
LmnI GCTCC 1 cut(s) 11
LpnPI CCDG 6 cut(s) 128, 155, 220, 408, 589, 641
Lsp1109I GCAGC 1 cut(s) 190
LweI GCATC 1 cut(s) 286
MaeI CTAG 4 cut(s) 15, 47, 132, 327
MaeIII GTNAC 2 cut(s) 349, 517
MalI GATC 2 cut(s) 325, 552
MboI GATC 2 cut(s) 323, 550
MboII GAAGA 2 cut(s) 149, 167
MflI RGATCY 1 cut(s) 323
MluCI AATT 7 cut(s) 54, 136, 210, 314, 407, 412, 598
MmeI TCCRAC 1 cut(s) 208
MnlI CCTC 5 cut(s) 81, 191, 199, 205, 296
Mph1103I ATGCAT 1 cut(s) 495
MroXI GAANNNNTTC 1 cut(s) 42
MseI TTAA 7 cut(s) 62, 311, 360, 411, 537, 546, 659
MspCI CTTAAG 2 cut(s) 61, 359
MspI CCGG 2 cut(s) 207, 628
MspR9I CCNGG 1 cut(s) 143
Mva1269I GAATGC 1 cut(s) 454
MvaI CCWGG 1 cut(s) 143
NdeII GATC 2 cut(s) 323, 550
NlaIII CATG 2 cut(s) 493, 650
NlaIV GGNNCC 1 cut(s) 392
NmuCI GTSAC 1 cut(s) 517
NsiI ATGCAT 1 cut(s) 495
PctI GAATGC 1 cut(s) 454
PdmI GAANNNNTTC 1 cut(s) 42
PfeI GAWTC 1 cut(s) 231
PflFI GACNNNGTC 1 cut(s) 153
PfoI TCCNGGA 1 cut(s) 141
PkrI GCNGC 1 cut(s) 205
PshBI ATTAAT 1 cut(s) 546
Psp6I CCWGG 1 cut(s) 141
PspFI CCCAGC 1 cut(s) 394
PspGI CCWGG 1 cut(s) 141
PspN4I GGNNCC 1 cut(s) 392
PsuI RGATCY 1 cut(s) 323
PsyI GACNNNGTC 1 cut(s) 153
RsaI GTAC 2 cut(s) 279, 367
RsaNI GTAC 2 cut(s) 278, 366
SaqAI TTAA 7 cut(s) 62, 311, 360, 411, 537, 546, 659
SatI GCNGC 1 cut(s) 204
Sau3AI GATC 2 cut(s) 323, 550
ScrFI CCNGG 1 cut(s) 143
SetI ASST 8 cut(s) 16, 34, 92, 98, 167, 283, 356, 481
SfaNI GCATC 1 cut(s) 286
SfcI CTRYAG 1 cut(s) 27
SmlI CTYRAG 3 cut(s) 61, 74, 359
SmoI CTYRAG 3 cut(s) 61, 74, 359
SpeI ACTAGT 1 cut(s) 131
Sse9I AATT 7 cut(s) 54, 136, 210, 314, 407, 412, 598
SspMI CTAG 4 cut(s) 15, 47, 132, 327
StyD4I CCNGG 1 cut(s) 141
TaaI ACNGT 2 cut(s) 382, 523
TaqI TCGA 1 cut(s) 370
TasI AATT 7 cut(s) 54, 136, 210, 314, 407, 412, 598
TfiI GAWTC 1 cut(s) 231
Tru1I TTAA 7 cut(s) 62, 311, 360, 411, 537, 546, 659
Tru9I TTAA 7 cut(s) 62, 311, 360, 411, 537, 546, 659
TseFI GTSAC 1 cut(s) 517
TseI GCWGC 1 cut(s) 203
Tsp45I GTSAC 1 cut(s) 517
TspDTI ATGAA 3 cut(s) 51, 478, 638
Tth111I GACNNNGTC 1 cut(s) 153
Vha464I CTTAAG 2 cut(s) 61, 359
VspI ATTAAT 1 cut(s) 546
XapI RAATTY 3 cut(s) 54, 314, 598
XmnI GAANNNNTTC 1 cut(s) 42
XspI CTAG 4 cut(s) 15, 47, 132, 327
Zsp2I ATGCAT 1 cut(s) 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.