Rw6G026070

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000369
Physical Location & Seq
Forward (+)
49464716 .. 49465859
1144 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G026070.1

Sequence Viewer

Length: 1005 bp
ATGGAAACTGGAGCTAGTTTTTTGGCTCTAGCTGATGAAAGTATTCTAGTAGAAATTCTCTTAAGATTGCCTCTCAAGTCTATATGTAGGTTTAGGTGTGTATCAAAAGAGTGGGATGGTCTCACCAAAACTAGTTATTTCCTGGACAGACATCGTCTTCACAGCTCTCGCCGTCTTCTCCTCATCTCCTCGTCCTCTCTTGCTGCCGGAATTAGTAATAAGAAAGGAGTTGGAATCTCATTACTTGCTGATGAAGAAACGGCAGTTTCAAGTTTGAGTGTACCTTTCCTCCCCAAGGATGCAAGATGGGGTTTAGAATTTGTGGGATCTAGTAATGGGTTACTTTGTTGCGTTACCTTGCTTAAGGGTACTCGAATAGCCACAGTAGTATGGAACCCAGCAACAGACCAATTTAATTATTTTCCTATTGGTTTGGAGAAAAGAGTTGAGAATGCTACTTACTATCGTGTAATCATAGGTTTTGATTTCATGCATAGCATTAGTGCATACAAGTTGGTGACAGTTCACCCTAGTCCAGAGTGTTCACTTGAACCGGAACTTGAACTTACATCATGTAGAAGGTTTAATATTCACTCTATTACTGTGAATGGAGTGCTGTATTGGTTGGTCGAGAAACAAACAGCTGGGGTGGCTCTCGTTTCGTTCAGTTTACATGATGAGGCCTTCAAGGATACATGGAGACCACTACCAGGAGAAATAGTACGCTATCTTACTAAGGGTATTTTGTTGAAGATGCAATTAATTAGATGGAAAAATTCAGTTGCAGTTGAAGGCTATCTTCGGGTGCAGGAGGGCGACCAATTTGTGATGTGGGTGGATACTACAACTGATCAAGAAACTAACACTTGTTCTTGGATTCAACAAATAAGAATCAGATGGCCATCTTCGTTATTCCACATAGGAACATTAAGTAAGGTACATGCAGAAAGAAACGTTTGTTTTTATTCCGTAGTGGGTTATGCGGAGAGCAACGTCCAGCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

334

Amino Acids

37.73

Weight (kDa)

8.08

Isoelectric Point (pI)

39.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 15 - 38 8.6e-06 F-box domain
FBA_3 PF08268 98 - 279 4.5e-07 F-box associated beta propeller domain
FBA_1 PF07734 107 - 302 2.4e-09 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis pycom17g23320
rosa_chinensis RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 983
AclI AACGTT 1 cut(s) 954
AclWI GGATC 1 cut(s) 334
AcoI YGGCCR 1 cut(s) 899
AcsI RAATTY 3 cut(s) 54, 317, 775
AfaI GTAC 4 cut(s) 282, 370, 723, 939
AfiI CCNNNNNNNGG 2 cut(s) 295, 710
AflII CTTAAG 2 cut(s) 61, 362
AgsI TTSAA 7 cut(s) 270, 551, 563, 688, 751, 791, 881
AhlI ACTAGT 1 cut(s) 131
AjnI CCWGG 2 cut(s) 141, 709
AluBI AGCT 5 cut(s) 14, 32, 165, 644, 1000
AluI AGCT 5 cut(s) 14, 32, 165, 644, 1000
Alw26I GTCTC 2 cut(s) 125, 694
AlwI GGATC 1 cut(s) 334
AoxI GGCC 2 cut(s) 681, 899
ApeKI GCWGC 1 cut(s) 203
ApoI RAATTY 3 cut(s) 54, 317, 775
AseI ATTAAT 1 cut(s) 761
Asp700I GAANNNNTTC 1 cut(s) 42
AsuHPI GGTGA 3 cut(s) 115, 518, 529
BalI TGGCCA 1 cut(s) 901
BbsI GAAGAC 2 cut(s) 149, 167
BbvI GCAGC 1 cut(s) 190
BccI CCATC 5 cut(s) 110, 300, 762, 891, 910
BceAI ACGGC 2 cut(s) 156, 276
BciT130I CCWGG 2 cut(s) 143, 711
BciVI GTATCC 2 cut(s) 685, 832
BclI TGATCA 1 cut(s) 850
BcoDI GTCTC 2 cut(s) 125, 694
BcuI ACTAGT 1 cut(s) 131
BfaI CTAG 6 cut(s) 15, 29, 47, 132, 330, 531
BfmI CTRYAG 1 cut(s) 1001
BfrI CTTAAG 2 cut(s) 61, 362
BfuI GTATCC 2 cut(s) 685, 832
BisI GCNGC 1 cut(s) 204
BlsI GCNGC 1 cut(s) 205
Bme1390I CCNGG 2 cut(s) 143, 711
BmiI GGNNCC 1 cut(s) 395
BmrFI CCNGG 2 cut(s) 143, 711
BmsI GCATC 2 cut(s) 289, 744
BpiI GAAGAC 2 cut(s) 149, 167
BpmI CTGGAG 1 cut(s) 30
BpuEI CTTGAG 1 cut(s) 59
BsaBI GATNNNNATC 1 cut(s) 901
BsaI GGTCTC 2 cut(s) 125, 694
BsaJI CCNNGG 1 cut(s) 294
BsaWI WCCGGW 1 cut(s) 553
BsaXI ACNNNNNCTCC 4 cut(s) 273, 303, 705, 735
Bsc4I CCNNNNNNNGG 2 cut(s) 295, 710
Bse1I ACTGG 1 cut(s) 13
Bse8I GATNNNNATC 1 cut(s) 901
BseBI CCWGG 2 cut(s) 143, 711
BseDI CCNNGG 1 cut(s) 294
BseGI GGATG 2 cut(s) 121, 304
BseJI GATNNNNATC 1 cut(s) 901
BseLI CCNNNNNNNGG 2 cut(s) 295, 710
BseNI ACTGG 1 cut(s) 13
BseRI GAGGAG 2 cut(s) 170, 178
BseXI GCAGC 1 cut(s) 190
BseYI CCCAGC 2 cut(s) 397, 644
BsgI GTGCAG 1 cut(s) 827
BshFI GGCC 2 cut(s) 683, 901
BsiSI CCGG 2 cut(s) 207, 554
BslI CCNNNNNNNGG 2 cut(s) 295, 710
BsmAI GTCTC 2 cut(s) 125, 694
BsmI GAATGC 1 cut(s) 457
BsnI GGCC 2 cut(s) 683, 901
Bso31I GGTCTC 2 cut(s) 125, 694
Bsp143I GATC 2 cut(s) 326, 850
BspACI CCGC 1 cut(s) 983
BspANI GGCC 2 cut(s) 683, 901
BspLI GGNNCC 1 cut(s) 395
BspPI GGATC 1 cut(s) 334
BspTI CTTAAG 2 cut(s) 61, 362
BspTNI GGTCTC 2 cut(s) 125, 694
BsrI ACTGG 1 cut(s) 13
BssECI CCNNGG 1 cut(s) 294
BssMI GATC 2 cut(s) 326, 850
BssT1I CCWWGG 1 cut(s) 294
Bst2UI CCWGG 2 cut(s) 143, 711
Bst4CI ACNGT 3 cut(s) 385, 523, 604
BstAFI CTTAAG 2 cut(s) 61, 362
BstDEI CTNAG 1 cut(s) 735
BstENI CCTNNNNNAGG 1 cut(s) 293
BstF5I GGATG 2 cut(s) 121, 304
BstKTI GATC 2 cut(s) 329, 853
BstMAI GTCTC 2 cut(s) 125, 694
BstMBI GATC 2 cut(s) 326, 850
BstMWI GCNNNNNNNGC 1 cut(s) 650
BstNI CCWGG 2 cut(s) 143, 711
BstNSI RCATGY 1 cut(s) 944
BstSCI CCNGG 2 cut(s) 141, 709
BstSFI CTRYAG 1 cut(s) 1001
BstV1I GCAGC 1 cut(s) 190
BstV2I GAAGAC 2 cut(s) 149, 167
BstX2I RGATCY 1 cut(s) 326
BstYI RGATCY 1 cut(s) 326
BsuI GTATCC 2 cut(s) 685, 832
BsuRI GGCC 2 cut(s) 683, 901
BtsCI GGATG 2 cut(s) 121, 304
Csp6I GTAC 4 cut(s) 281, 369, 722, 938
CviAII CATG 5 cut(s) 490, 573, 674, 696, 941
CviQI GTAC 4 cut(s) 281, 369, 722, 938
DdeI CTNAG 1 cut(s) 735
DpnI GATC 2 cut(s) 328, 852
DpnII GATC 2 cut(s) 326, 850
EaeI YGGCCR 1 cut(s) 899
Eco130I CCWWGG 1 cut(s) 294
Eco147I AGGCCT 1 cut(s) 683
Eco31I GGTCTC 2 cut(s) 125, 694
EcoNI CCTNNNNNAGG 1 cut(s) 293
EcoRII CCWGG 2 cut(s) 141, 709
EcoT14I CCWWGG 1 cut(s) 294
EcoT22I ATGCAT 1 cut(s) 495
ErhI CCWWGG 1 cut(s) 294
FaeI CATG 5 cut(s) 493, 576, 677, 699, 944
FalI AAGNNNNNCTT 2 cut(s) 783, 815
FatI CATG 5 cut(s) 489, 572, 673, 695, 940
FbaI TGATCA 1 cut(s) 850
Fnu4HI GCNGC 1 cut(s) 204
FokI GGATG 2 cut(s) 128, 311
Fsp4HI GCNGC 1 cut(s) 204
FspBI CTAG 6 cut(s) 15, 29, 47, 132, 330, 531
GluI GCNGC 1 cut(s) 204
GsaI CCCAGC 2 cut(s) 401, 648
GsuI CTGGAG 1 cut(s) 30
HaeIII GGCC 2 cut(s) 683, 901
HapII CCGG 2 cut(s) 207, 554
Hin1II CATG 5 cut(s) 493, 576, 677, 699, 944
HinfI GANTC 3 cut(s) 234, 877, 891
HpaII CCGG 2 cut(s) 207, 554
HphI GGTGA 3 cut(s) 115, 518, 529
Hpy166II GTNNAC 4 cut(s) 281, 526, 545, 671
Hpy188I TCNGA 1 cut(s) 896
Hpy188III TCNNGA 3 cut(s) 536, 631, 854
Hpy8I GTNNAC 4 cut(s) 281, 526, 545, 671
HpyAV CCTTC 3 cut(s) 573, 694, 785
HpyCH4III ACNGT 3 cut(s) 385, 523, 604
HpyCH4IV ACGT 2 cut(s) 954, 993
HpyCH4V TGCA 7 cut(s) 302, 493, 506, 757, 785, 808, 944
HpyF10VI GCNNNNNNNGC 1 cut(s) 650
HpyF3I CTNAG 1 cut(s) 735
HpySE526I ACGT 2 cut(s) 954, 993
Hsp92II CATG 5 cut(s) 493, 576, 677, 699, 944
Ksp22I TGATCA 1 cut(s) 850
Kzo9I GATC 2 cut(s) 326, 850
LmnI GCTCC 1 cut(s) 11
Lsp1109I GCAGC 1 cut(s) 190
LweI GCATC 2 cut(s) 289, 744
MaeI CTAG 6 cut(s) 15, 29, 47, 132, 330, 531
MaeII ACGT 2 cut(s) 954, 993
MaeIII GTNAC 3 cut(s) 339, 352, 517
MalI GATC 2 cut(s) 328, 852
MboI GATC 2 cut(s) 326, 850
MboII GAAGA 6 cut(s) 149, 167, 266, 763, 791, 897
MflI RGATCY 1 cut(s) 326
MlsI TGGCCA 1 cut(s) 901
MluCI AATT 9 cut(s) 54, 210, 317, 410, 415, 758, 762, 775, 821
MluNI TGGCCA 1 cut(s) 901
MmeI TCCRAC 1 cut(s) 211
MnlI CCTC 7 cut(s) 81, 191, 199, 205, 299, 673, 805
Mox20I TGGCCA 1 cut(s) 901
Mph1103I ATGCAT 1 cut(s) 495
MroXI GAANNNNTTC 1 cut(s) 42
MscI TGGCCA 1 cut(s) 901
MseI TTAA 6 cut(s) 62, 363, 414, 585, 761, 929
Msp20I TGGCCA 1 cut(s) 901
MspA1I CMGCKG 1 cut(s) 644
MspCI CTTAAG 2 cut(s) 61, 362
MspI CCGG 2 cut(s) 207, 554
MspR9I CCNGG 2 cut(s) 143, 711
Mva1269I GAATGC 1 cut(s) 457
MvaI CCWGG 2 cut(s) 143, 711
MwoI GCNNNNNNNGC 1 cut(s) 650
NdeII GATC 2 cut(s) 326, 850
NlaIII CATG 5 cut(s) 493, 576, 677, 699, 944
NlaIV GGNNCC 1 cut(s) 395
NmuCI GTSAC 1 cut(s) 517
NsiI ATGCAT 1 cut(s) 495
NspI RCATGY 1 cut(s) 944
PceI AGGCCT 1 cut(s) 683
PctI GAATGC 1 cut(s) 457
PdmI GAANNNNTTC 1 cut(s) 42
PfeI GAWTC 3 cut(s) 234, 877, 891
PflFI GACNNNGTC 1 cut(s) 153
PfoI TCCNGGA 1 cut(s) 141
PkrI GCNGC 1 cut(s) 205
PshBI ATTAAT 1 cut(s) 761
Psp1406I AACGTT 1 cut(s) 954
Psp6I CCWGG 2 cut(s) 141, 709
PspFI CCCAGC 2 cut(s) 397, 644
PspGI CCWGG 2 cut(s) 141, 709
PspN4I GGNNCC 1 cut(s) 395
PsuI RGATCY 1 cut(s) 326
PsyI GACNNNGTC 1 cut(s) 153
PvuII CAGCTG 1 cut(s) 644
RsaI GTAC 4 cut(s) 282, 370, 723, 939
RsaNI GTAC 4 cut(s) 281, 369, 722, 938
SaqAI TTAA 6 cut(s) 62, 363, 414, 585, 761, 929
SatI GCNGC 1 cut(s) 204
Sau3AI GATC 2 cut(s) 326, 850
ScrFI CCNGG 2 cut(s) 143, 711
SfaNI GCATC 2 cut(s) 289, 744
SfcI CTRYAG 1 cut(s) 1001
SmlI CTYRAG 3 cut(s) 61, 74, 362
SmoI CTYRAG 3 cut(s) 61, 74, 362
SpeI ACTAGT 1 cut(s) 131
Sse9I AATT 9 cut(s) 54, 210, 317, 410, 415, 758, 762, 775, 821
SseBI AGGCCT 1 cut(s) 683
SsiI CCGC 1 cut(s) 983
SspI AATATT 1 cut(s) 589
SspMI CTAG 6 cut(s) 15, 29, 47, 132, 330, 531
StuI AGGCCT 1 cut(s) 683
StyD4I CCNGG 2 cut(s) 141, 709
StyI CCWWGG 1 cut(s) 294
TaaI ACNGT 3 cut(s) 385, 523, 604
TaiI ACGT 2 cut(s) 957, 996
TaqI TCGA 2 cut(s) 373, 630
TasI AATT 9 cut(s) 54, 210, 317, 410, 415, 758, 762, 775, 821
TfiI GAWTC 3 cut(s) 234, 877, 891
Tru1I TTAA 6 cut(s) 62, 363, 414, 585, 761, 929
Tru9I TTAA 6 cut(s) 62, 363, 414, 585, 761, 929
TseFI GTSAC 1 cut(s) 517
TseI GCWGC 1 cut(s) 203
Tsp45I GTSAC 1 cut(s) 517
TspDTI ATGAA 3 cut(s) 51, 267, 478
TspGWI ACGGA 1 cut(s) 958
Tth111I GACNNNGTC 1 cut(s) 153
Vha464I CTTAAG 2 cut(s) 61, 362
VspI ATTAAT 1 cut(s) 761
XagI CCTNNNNNAGG 1 cut(s) 293
XapI RAATTY 3 cut(s) 54, 317, 775
XceI RCATGY 1 cut(s) 944
XmnI GAANNNNTTC 1 cut(s) 42
XspI CTAG 6 cut(s) 15, 29, 47, 132, 330, 531
Zsp2I ATGCAT 1 cut(s) 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.