Rorug01G0015500

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000369
Physical Location & Seq
Reverse (-)
2727240 .. 2727839
600 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0015500.1

Sequence Viewer

Length: 600 bp
ATGGAACCACAAACCCAGCAACCAACCGAGGATGGAGGAAGCAACAAAGCAGCCGGGAGTAGTGCTAACATGCTTTATAAGCGGAGTAGGTGGACTCCCACTACAGATCAGATAAGAATCATCAAGGAGCTTTTCTACAATAAGGGAGTTAGGTCCCCAACTGTAGAGCAGGTTGAGAGGATCTATCTCCAGCTGAAATGGTACGGCAAGATCGAGTTCAAGAACGTCTATTTTTGGTTCGTGAACCAAAGGGCTCGGGAGAAGCAGAAGAAGAAGTCCACTTCGGATGTTCATGTGCCCATGCAAAGATCAGGGCTTGTTGGTGATGACAATGTTGCCAATTCATCTGCACCTGCTTCTGCTTCTTCTGCTGGTGTGATGATTGCTGTTAACGGGCAGATGGGGAACTATGGTGGTTATGGATCTATGAACATGGAGATTGAAACCCTTCCTCTGTTCCCCATGCATGGTGAGGACATCTTTGGCAACATGAAGACTACTTCCGATGGAGGTGGCGGTCACGGTGGTGGCTCTCACATTTCCCTTGAGCTCAGCCTTTCCTGCGAGGGCAAAGCTGGAAAAAGTTTCCGGAGCCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

199

Amino Acids

21.84

Weight (kDa)

9.28

Isoelectric Point (pI)

53.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 27 - 89 1.5e-08 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis pycom17g23320
rosa_chinensis RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 78
AarI CACCTGC 1 cut(s) 361
Acc36I ACCTGC 2 cut(s) 160, 361
AccIII TCCGGA 1 cut(s) 588
AciI CCGC 3 cut(s) 82, 516, 595
AclWI GGATC 2 cut(s) 188, 430
AfaI GTAC 1 cut(s) 203
AfiI CCNNNNNNNGG 1 cut(s) 467
AgsI TTSAA 2 cut(s) 220, 443
AleI CACNNNNGTG 1 cut(s) 525
AluBI AGCT 4 cut(s) 130, 193, 550, 575
AluI AGCT 4 cut(s) 130, 193, 550, 575
Alw21I GWGCWC 1 cut(s) 552
AlwI GGATC 2 cut(s) 188, 430
Ama87I CYCGRG 1 cut(s) 255
Aor13HI TCCGGA 1 cut(s) 588
ApeKI GCWGC 1 cut(s) 50
Asp700I GAANNNNTTC 1 cut(s) 447
AspS9I GGNCC 1 cut(s) 153
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 2 cut(s) 335, 482
AvaI CYCGRG 1 cut(s) 255
AvaII GGWCC 1 cut(s) 153
BaeGI GKGCMC 1 cut(s) 300
BanII GRGCYC 2 cut(s) 256, 552
BbsI GAAGAC 1 cut(s) 500
Bbv12I GWGCWC 1 cut(s) 552
BbvI GCAGC 1 cut(s) 62
BccI CCATC 3 cut(s) 26, 394, 500
BceAI ACGGC 1 cut(s) 220
BcnI CCSGG 1 cut(s) 55
BfmI CTRYAG 2 cut(s) 102, 162
BfuAI ACCTGC 2 cut(s) 160, 361
BisI GCNGC 2 cut(s) 51, 595
BlpI GCTNAGC 1 cut(s) 551
BlsI GCNGC 2 cut(s) 52, 596
Bme1390I CCNGG 1 cut(s) 55
Bme18I GGWCC 1 cut(s) 153
BmeT110I CYCGRG 1 cut(s) 255
BmgT120I GGNCC 1 cut(s) 153
BmiI GGNNCC 3 cut(s) 6, 155, 593
BmrFI CCNGG 1 cut(s) 55
BpiI GAAGAC 1 cut(s) 500
BpmI CTGGAG 1 cut(s) 173
Bpu1102I GCTNAGC 1 cut(s) 551
BpuEI CTTGAG 1 cut(s) 566
BpuMI CCSGG 1 cut(s) 55
BsaBI GATNNNNATC 1 cut(s) 116
BsaJI CCNNGG 1 cut(s) 27
BsaWI WCCGGW 1 cut(s) 588
Bsc4I CCNNNNNNNGG 1 cut(s) 467
Bse8I GATNNNNATC 1 cut(s) 116
BseAI TCCGGA 1 cut(s) 588
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 2 cut(s) 37, 292
BseJI GATNNNNATC 1 cut(s) 116
BseLI CCNNNNNNNGG 1 cut(s) 467
BseMII CTCAG 1 cut(s) 565
BseSI GKGCMC 1 cut(s) 300
BseXI GCAGC 1 cut(s) 62
BseYI CCCAGC 1 cut(s) 15
BsgI GTGCAG 1 cut(s) 333
BsiHKAI GWGCWC 1 cut(s) 552
BsiHKCI CYCGRG 1 cut(s) 255
BsiSI CCGG 2 cut(s) 54, 589
BslFI GGGAC 1 cut(s) 139
BslI CCNNNNNNNGG 1 cut(s) 467
BsmFI GGGAC 1 cut(s) 139
BsoBI CYCGRG 1 cut(s) 255
Bsp1286I GDGCHC 3 cut(s) 256, 300, 552
Bsp13I TCCGGA 1 cut(s) 588
Bsp143I GATC 5 cut(s) 106, 180, 210, 308, 422
Bsp1720I GCTNAGC 1 cut(s) 551
BspACI CCGC 3 cut(s) 82, 516, 595
BspCNI CTCAG 1 cut(s) 564
BspEI TCCGGA 1 cut(s) 588
BspLI GGNNCC 3 cut(s) 6, 155, 593
BspMI ACCTGC 2 cut(s) 160, 361
BspPI GGATC 2 cut(s) 188, 430
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 5 cut(s) 106, 180, 210, 308, 422
Bst4CI ACNGT 2 cut(s) 163, 524
BstDEI CTNAG 1 cut(s) 551
BstF5I GGATG 2 cut(s) 37, 292
BstKTI GATC 5 cut(s) 109, 183, 213, 311, 425
BstMBI GATC 5 cut(s) 106, 180, 210, 308, 422
BstMWI GCNNNNNNNGC 3 cut(s) 79, 368, 561
BstNSI RCATGY 1 cut(s) 73
BstSCI CCNGG 1 cut(s) 53
BstSFI CTRYAG 2 cut(s) 102, 162
BstSLI GKGCMC 1 cut(s) 300
BstV1I GCAGC 1 cut(s) 62
BstV2I GAAGAC 1 cut(s) 500
BstX2I RGATCY 2 cut(s) 180, 422
BstYI RGATCY 2 cut(s) 180, 422
BtsCI GGATG 2 cut(s) 37, 292
BveI ACCTGC 2 cut(s) 160, 361
Cfr13I GGNCC 1 cut(s) 153
Csp6I GTAC 1 cut(s) 202
CviAII CATG 7 cut(s) 70, 293, 301, 433, 463, 467, 490
CviQI GTAC 1 cut(s) 202
DdeI CTNAG 1 cut(s) 551
DpnI GATC 5 cut(s) 108, 182, 212, 310, 424
DpnII GATC 5 cut(s) 106, 180, 210, 308, 422
Ecl136II GAGCTC 1 cut(s) 550
Eco24I GRGCYC 2 cut(s) 256, 552
Eco47I GGWCC 1 cut(s) 153
Eco53kI GAGCTC 1 cut(s) 550
Eco88I CYCGRG 1 cut(s) 255
EcoICRI GAGCTC 1 cut(s) 550
EcoO109I RGGNCCY 1 cut(s) 153
EcoT22I ATGCAT 1 cut(s) 468
EcoT38I GRGCYC 2 cut(s) 256, 552
FaeI CATG 7 cut(s) 73, 296, 304, 436, 466, 470, 493
FaqI GGGAC 1 cut(s) 139
FatI CATG 7 cut(s) 69, 292, 300, 432, 462, 466, 489
Fnu4HI GCNGC 2 cut(s) 51, 595
FokI GGATG 2 cut(s) 44, 299
FriOI GRGCYC 2 cut(s) 256, 552
Fsp4HI GCNGC 2 cut(s) 51, 595
GluI GCNGC 2 cut(s) 51, 595
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 1 cut(s) 173
HapII CCGG 2 cut(s) 54, 589
Hin1II CATG 7 cut(s) 73, 296, 304, 436, 466, 470, 493
HincII GTYRAC 1 cut(s) 391
HindII GTYRAC 1 cut(s) 391
HinfI GANTC 2 cut(s) 94, 117
HpaI GTTAAC 1 cut(s) 391
HpaII CCGG 2 cut(s) 54, 589
HphI GGTGA 2 cut(s) 335, 482
Hpy166II GTNNAC 4 cut(s) 93, 244, 279, 391
Hpy188I TCNGA 3 cut(s) 111, 286, 505
Hpy188III TCNNGA 4 cut(s) 220, 241, 257, 589
Hpy8I GTNNAC 4 cut(s) 93, 244, 279, 391
HpyAV CCTTC 1 cut(s) 458
HpyCH4III ACNGT 2 cut(s) 163, 524
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 3 cut(s) 304, 350, 466
HpyF10VI GCNNNNNNNGC 3 cut(s) 79, 368, 561
HpyF3I CTNAG 1 cut(s) 551
HpySE526I ACGT 1 cut(s) 225
Hsp92II CATG 7 cut(s) 73, 296, 304, 436, 466, 470, 493
Kpn2I TCCGGA 1 cut(s) 588
KspAI GTTAAC 1 cut(s) 391
Kzo9I GATC 5 cut(s) 106, 180, 210, 308, 422
LmnI GCTCC 2 cut(s) 127, 591
LpnPI CCDG 9 cut(s) 29, 67, 155, 203, 297, 357, 366, 561, 574
Lsp1109I GCAGC 1 cut(s) 62
MaeII ACGT 1 cut(s) 225
MaeIII GTNAC 1 cut(s) 518
MalI GATC 5 cut(s) 108, 182, 212, 310, 424
MboI GATC 5 cut(s) 106, 180, 210, 308, 422
MboII GAAGA 4 cut(s) 280, 283, 357, 505
MflI RGATCY 2 cut(s) 180, 422
MhlI GDGCHC 3 cut(s) 256, 300, 552
MluCI AATT 1 cut(s) 340
MlyI GAGTC 1 cut(s) 88
MnlI CCTC 7 cut(s) 22, 29, 171, 462, 466, 503, 559
Mph1103I ATGCAT 1 cut(s) 468
MroI TCCGGA 1 cut(s) 588
MroXI GAANNNNTTC 1 cut(s) 447
MseI TTAA 1 cut(s) 390
MslI CAYNNNNRTG 1 cut(s) 525
MspA1I CMGCKG 2 cut(s) 193, 597
MspI CCGG 2 cut(s) 54, 589
MspR9I CCNGG 1 cut(s) 55
MwoI GCNNNNNNNGC 3 cut(s) 79, 368, 561
NciI CCSGG 1 cut(s) 55
NdeII GATC 5 cut(s) 106, 180, 210, 308, 422
NlaIII CATG 7 cut(s) 73, 296, 304, 436, 466, 470, 493
NlaIV GGNNCC 3 cut(s) 6, 155, 593
NmuCI GTSAC 1 cut(s) 518
NsiI ATGCAT 1 cut(s) 468
NspI RCATGY 1 cut(s) 73
OliI CACNNNNGTG 1 cut(s) 525
PaqCI CACCTGC 1 cut(s) 361
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PdmI GAANNNNTTC 1 cut(s) 447
PfeI GAWTC 1 cut(s) 117
PkrI GCNGC 2 cut(s) 52, 596
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
PpuMI RGGWCCY 1 cut(s) 153
PsiI TTATAA 1 cut(s) 78
Psp124BI GAGCTC 1 cut(s) 552
Psp5II RGGWCCY 1 cut(s) 153
PspFI CCCAGC 1 cut(s) 15
PspN4I GGNNCC 3 cut(s) 6, 155, 593
PspPI GGNCC 1 cut(s) 153
PspPPI RGGWCCY 1 cut(s) 153
PsuI RGATCY 2 cut(s) 180, 422
PvuII CAGCTG 1 cut(s) 193
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
RseI CAYNNNNRTG 1 cut(s) 525
SacI GAGCTC 1 cut(s) 552
SaqAI TTAA 1 cut(s) 390
SatI GCNGC 2 cut(s) 51, 595
Sau3AI GATC 5 cut(s) 106, 180, 210, 308, 422
Sau96I GGNCC 1 cut(s) 153
SchI GAGTC 1 cut(s) 88
ScrFI CCNGG 1 cut(s) 55
SduI GDGCHC 3 cut(s) 256, 300, 552
SfcI CTRYAG 2 cut(s) 102, 162
SinI GGWCC 1 cut(s) 153
SmiMI CAYNNNNRTG 1 cut(s) 525
SmlI CTYRAG 1 cut(s) 545
SmoI CTYRAG 1 cut(s) 545
Sse9I AATT 1 cut(s) 340
SsiI CCGC 3 cut(s) 82, 516, 595
SstI GAGCTC 1 cut(s) 552
StyD4I CCNGG 1 cut(s) 53
TaaI ACNGT 2 cut(s) 163, 524
TaiI ACGT 1 cut(s) 228
TaqI TCGA 1 cut(s) 213
TasI AATT 1 cut(s) 340
TauI GCSGC 1 cut(s) 597
TfiI GAWTC 1 cut(s) 117
Tru1I TTAA 1 cut(s) 390
Tru9I TTAA 1 cut(s) 390
TseFI GTSAC 1 cut(s) 518
TseI GCWGC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 518
TspDTI ATGAA 4 cut(s) 281, 333, 443, 506
VpaK11BI GGWCC 1 cut(s) 153
XceI RCATGY 1 cut(s) 73
XmnI GAANNNNTTC 1 cut(s) 447
Zsp2I ATGCAT 1 cut(s) 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.