Rmu_sc0002267.1_g000011

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002267.1
OG0000369
Physical Location & Seq
Reverse (-)
38948 .. 40258
1311 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002267.1_g000011.1.cds

Sequence Viewer

Length: 1311 bp
atggaaactattagaagccaagttctaaagctgagctatactttggctctaggaatacctgaaaatgtcctagttgaaattctctcaaaactgcctgtcaagtctttacttaggtttctctgcgtctcgcaagagtggcatgccctcaccaaaagttcttacttcattgccagacaccttgttcatcaatattctagctgctccgatcagagtcgtccttgtcttctctttctctcgagcctagctggaagctttgaagatgattgcaagccacgactcggattctcgttgcttcgtgatgaagaaataacgtttttgggattaccttccctgccgaaccttacaatcaaaacagcggccctaaagctcgtgggatctagtaatggcctagttttttgtcatgtcattgacactgaaaattggactagtactacagaagagaagcatgatattgcttctagatttagagaattattattagtatggaacccagcaacacgacaatttaggtgtcttcctgaacctaaaattaatatttctttggagcaagaggaggaggctacttctgttcttttcgcttttgattgtgtacatgatcatgacattactgaatacaaattggtgagagttttttctcatgggaaagaggttactacttttgaagctcaagttttcatccgaagtacaaattcttggaggcaagtcaaggacaaattagcgtttccatcatataaaagttgttttgaatcaactgcaactacattgaatggagtgctgtattggaaggtagtgcaaaaatccgatgagtgctacgttctgtcattcagtttacatgaagaggttttcagcattatacagctaccaatatgtatacgttaccttaatcgtgacgattataactggaccacagtacctttatattcatggaaagattcacctgcaattgtaataaccgattattcagccaatggcaatcccaacatagtgttttgggtgatgagtaccaatgaagaatcaaagagtaacactaatgagagtggtacacaaatgcgaacaccaacttgggttcaacaagtaagactcaaatactcagtactagatggatttagcatgataggactttggaaggatcaatttcttttcacatcgaagaaaacaaatgaagctgctggtgccacagatgatattgagcccgaagacctgtttctgtacgaccccagaagtgataccaagagagagattgtgaaacatgcagtaaggatcaagtttatacgagtagaaaattatgtggagagcctacttccagtctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

436

Amino Acids

50.06

Weight (kDa)

5.77

Isoelectric Point (pI)

39.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis pycom17g23320
rosa_chinensis RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 897
AarI CACCTGC 1 cut(s) 946
Acc36I ACCTGC 1 cut(s) 946
AccB1I GGYRCC 1 cut(s) 1172
AccI GTMKAC 1 cut(s) 871
AciI CCGC 1 cut(s) 356
AclI AACGTT 1 cut(s) 311
AclWI GGATC 3 cut(s) 382, 1137, 1268
AcsI RAATTY 2 cut(s) 78, 688
AfaI GTAC 8 cut(s) 430, 591, 685, 912, 1003, 1042, 1095, 1211
AfiI CCNNNNNNNGG 1 cut(s) 278
AgsI TTSAA 6 cut(s) 77, 257, 662, 746, 766, 1070
AhlI ACTAGT 1 cut(s) 425
AjuI GAANNNNNNNTTGG 2 cut(s) 1045, 1077
AluBI AGCT 9 cut(s) 31, 36, 198, 245, 252, 367, 665, 859, 1166
AluI AGCT 9 cut(s) 31, 36, 198, 245, 252, 367, 665, 859, 1166
Alw26I GTCTC 1 cut(s) 130
AlwI GGATC 3 cut(s) 382, 1137, 1268
Ama87I CYCGRG 1 cut(s) 235
AoxI GGCC 2 cut(s) 357, 385
ApeKI GCWGC 2 cut(s) 198, 1166
ApoI RAATTY 2 cut(s) 78, 688
AseI ATTAAT 1 cut(s) 531
AspS9I GGNCC 2 cut(s) 358, 903
AsuHPI GGTGA 4 cut(s) 139, 634, 927, 1006
AvaI CYCGRG 1 cut(s) 235
AvaII GGWCC 1 cut(s) 903
BaeI ACNNNNGTAYC 2 cut(s) 894, 927
BanI GGYRCC 1 cut(s) 1172
BanII GRGCYC 1 cut(s) 1194
BauI CACGAG 1 cut(s) 368
BbsI GAAGAC 3 cut(s) 215, 506, 1203
BbvI GCAGC 2 cut(s) 185, 1153
BccI CCATC 2 cut(s) 733, 1094
BclI TGATCA 1 cut(s) 595
BcoDI GTCTC 1 cut(s) 130
BcuI ACTAGT 1 cut(s) 425
BfmI CTRYAG 1 cut(s) 432
BfuAI ACCTGC 1 cut(s) 946
BisI GCNGC 3 cut(s) 199, 357, 1167
BlpI GCTNAGC 1 cut(s) 32
BlsI GCNGC 3 cut(s) 200, 358, 1168
BmcAI AGTACT 2 cut(s) 430, 1095
Bme18I GGWCC 1 cut(s) 903
BmeT110I CYCGRG 1 cut(s) 235
BmgT120I GGNCC 2 cut(s) 358, 903
BmiI GGNNCC 2 cut(s) 488, 1174
BpiI GAAGAC 3 cut(s) 215, 506, 1203
Bpu1102I GCTNAGC 1 cut(s) 32
BpuEI CTTGAG 1 cut(s) 651
Bsc4I CCNNNNNNNGG 1 cut(s) 278
Bse1I ACTGG 2 cut(s) 905, 1304
Bse3DI GCAATG 1 cut(s) 165
BseGI GGATG 1 cut(s) 675
BseLI CCNNNNNNNGG 1 cut(s) 278
BseMI GCAATG 1 cut(s) 165
BseMII CTCAG 2 cut(s) 23, 1104
BseNI ACTGG 2 cut(s) 905, 1304
BseRI GAGGAG 2 cut(s) 566, 569
BseXI GCAGC 2 cut(s) 185, 1153
BseYI CCCAGC 1 cut(s) 490
BshFI GGCC 2 cut(s) 359, 387
BshNI GGYRCC 1 cut(s) 1172
BsiHKCI CYCGRG 1 cut(s) 235
BslI CCNNNNNNNGG 1 cut(s) 278
BsmAI GTCTC 1 cut(s) 130
BsmBI CGTCTC 1 cut(s) 130
BsnI GGCC 2 cut(s) 359, 387
BsoBI CYCGRG 1 cut(s) 235
Bsp1286I GDGCHC 1 cut(s) 1194
Bsp1407I TGTACA 1 cut(s) 589
Bsp143I GATC 5 cut(s) 205, 374, 595, 1129, 1260
Bsp1720I GCTNAGC 1 cut(s) 32
BspACI CCGC 1 cut(s) 356
BspANI GGCC 2 cut(s) 359, 387
BspCNI CTCAG 2 cut(s) 24, 1103
BspHI TCATGA 1 cut(s) 598
BspLI GGNNCC 2 cut(s) 488, 1174
BspMI ACCTGC 1 cut(s) 946
BspPI GGATC 3 cut(s) 382, 1137, 1268
BspT107I GGYRCC 1 cut(s) 1172
BsrDI GCAATG 1 cut(s) 165
BsrGI TGTACA 1 cut(s) 589
BsrI ACTGG 2 cut(s) 905, 1304
BssMI GATC 5 cut(s) 205, 374, 595, 1129, 1260
BssNAI GTATAC 1 cut(s) 872
BssSI CACGAG 1 cut(s) 368
Bst1107I GTATAC 1 cut(s) 872
Bst2BI CACGAG 1 cut(s) 368
Bst4CI ACNGT 1 cut(s) 910
Bst6I CTCTTC 2 cut(s) 432, 831
BstAUI TGTACA 1 cut(s) 589
BstC8I GCNNGC 2 cut(s) 141, 269
BstDEI CTNAG 3 cut(s) 32, 110, 1090
BstF5I GGATG 1 cut(s) 675
BstKTI GATC 5 cut(s) 208, 377, 598, 1132, 1263
BstMAI GTCTC 1 cut(s) 130
BstMBI GATC 5 cut(s) 205, 374, 595, 1129, 1260
BstMWI GCNNNNNNNGC 2 cut(s) 136, 1172
BstNSI RCATGY 2 cut(s) 143, 1253
BstSFI CTRYAG 1 cut(s) 432
BstV1I GCAGC 2 cut(s) 185, 1153
BstV2I GAAGAC 3 cut(s) 215, 506, 1203
BstX2I RGATCY 1 cut(s) 374
BstYI RGATCY 1 cut(s) 374
BstZ17I GTATAC 1 cut(s) 872
BsuRI GGCC 2 cut(s) 359, 387
BtsCI GGATG 1 cut(s) 675
BtsIMutI CAGTG 1 cut(s) 411
BveI ACCTGC 1 cut(s) 946
Cac8I GCNNGC 2 cut(s) 141, 269
CciI TCATGA 1 cut(s) 598
Cfr13I GGNCC 2 cut(s) 358, 903
CseI GACGC 1 cut(s) 112
Csp6I GTAC 8 cut(s) 429, 590, 684, 911, 1002, 1041, 1094, 1210
CviQI GTAC 8 cut(s) 429, 590, 684, 911, 1002, 1041, 1094, 1210
DdeI CTNAG 3 cut(s) 32, 110, 1090
DpnI GATC 5 cut(s) 207, 376, 597, 1131, 1262
DpnII GATC 5 cut(s) 205, 374, 595, 1129, 1260
Eam1104I CTCTTC 2 cut(s) 432, 831
EarI CTCTTC 2 cut(s) 432, 831
Eco24I GRGCYC 1 cut(s) 1194
Eco47I GGWCC 1 cut(s) 903
Eco88I CYCGRG 1 cut(s) 235
EcoT38I GRGCYC 1 cut(s) 1194
Esp3I CGTCTC 1 cut(s) 130
FbaI TGATCA 1 cut(s) 595
FblI GTMKAC 1 cut(s) 871
Fnu4HI GCNGC 3 cut(s) 199, 357, 1167
FokI GGATG 1 cut(s) 662
FriOI GRGCYC 1 cut(s) 1194
Fsp4HI GCNGC 3 cut(s) 199, 357, 1167
GluI GCNGC 3 cut(s) 199, 357, 1167
GsaI CCCAGC 1 cut(s) 494
HaeIII GGCC 2 cut(s) 359, 387
HgaI GACGC 1 cut(s) 112
HindIII AAGCTT 1 cut(s) 250
HinfI GANTC 7 cut(s) 211, 276, 282, 746, 932, 1013, 1080
HphI GGTGA 4 cut(s) 139, 634, 927, 1006
Hpy166II GTNNAC 4 cut(s) 590, 830, 872, 1043
Hpy188I TCNGA 5 cut(s) 205, 210, 281, 680, 802
Hpy188III TCNNGA 6 cut(s) 235, 296, 459, 518, 599, 887
Hpy8I GTNNAC 4 cut(s) 590, 830, 872, 1043
HpyAV CCTTC 3 cut(s) 336, 778, 1120
HpyCH4III ACNGT 1 cut(s) 910
HpyCH4IV ACGT 3 cut(s) 311, 813, 874
HpyCH4V TGCA 5 cut(s) 267, 755, 793, 941, 1253
HpyF10VI GCNNNNNNNGC 2 cut(s) 136, 1172
HpyF3I CTNAG 3 cut(s) 32, 110, 1090
HpySE526I ACGT 3 cut(s) 311, 813, 874
Ksp22I TGATCA 1 cut(s) 595
Kzo9I GATC 5 cut(s) 205, 374, 595, 1129, 1260
LmnI GCTCC 2 cut(s) 206, 544
Lsp1109I GCAGC 2 cut(s) 185, 1153
MaeII ACGT 3 cut(s) 311, 813, 874
MaeIII GTNAC 4 cut(s) 649, 875, 887, 1022
MalI GATC 5 cut(s) 207, 376, 597, 1131, 1262
MboI GATC 5 cut(s) 205, 374, 595, 1129, 1260
MboII GAAGA 9 cut(s) 215, 269, 314, 449, 506, 848, 1022, 1162, 1208
MfeI CAATTG 1 cut(s) 942
MflI RGATCY 1 cut(s) 374
MhlI GDGCHC 1 cut(s) 1194
MlyI GAGTC 3 cut(s) 220, 270, 1074
MnlI CCTC 7 cut(s) 155, 544, 547, 550, 640, 690, 832
MseI TTAA 2 cut(s) 531, 882
MslI CAYNNNNRTG 1 cut(s) 597
MspA1I CMGCKG 1 cut(s) 356
MunI CAATTG 1 cut(s) 942
MwoI GCNNNNNNNGC 2 cut(s) 136, 1172
NdeII GATC 5 cut(s) 205, 374, 595, 1129, 1260
NlaIV GGNNCC 2 cut(s) 488, 1174
NmuCI GTSAC 1 cut(s) 887
NspI RCATGY 2 cut(s) 143, 1253
PaeI GCATGC 1 cut(s) 143
PaeR7I CTCGAG 1 cut(s) 235
PagI TCATGA 1 cut(s) 598
PaqCI CACCTGC 1 cut(s) 946
PfeI GAWTC 4 cut(s) 282, 746, 932, 1013
PkrI GCNGC 3 cut(s) 200, 358, 1168
PleI GAGTC 3 cut(s) 219, 270, 1074
PpsI GAGTC 3 cut(s) 219, 270, 1074
PshBI ATTAAT 1 cut(s) 531
PsiI TTATAA 1 cut(s) 897
Psp1406I AACGTT 1 cut(s) 311
PspFI CCCAGC 1 cut(s) 490
PspN4I GGNNCC 2 cut(s) 488, 1174
PspPI GGNCC 2 cut(s) 358, 903
PsuI RGATCY 1 cut(s) 374
RsaI GTAC 8 cut(s) 430, 591, 685, 912, 1003, 1042, 1095, 1211
RsaNI GTAC 8 cut(s) 429, 590, 684, 911, 1002, 1041, 1094, 1210
RseI CAYNNNNRTG 1 cut(s) 597
SaqAI TTAA 2 cut(s) 531, 882
SatI GCNGC 3 cut(s) 199, 357, 1167
Sau3AI GATC 5 cut(s) 205, 374, 595, 1129, 1260
Sau96I GGNCC 2 cut(s) 358, 903
ScaI AGTACT 2 cut(s) 430, 1095
SchI GAGTC 3 cut(s) 220, 270, 1074
SduI GDGCHC 1 cut(s) 1194
SfcI CTRYAG 1 cut(s) 432
Sfr274I CTCGAG 1 cut(s) 235
SinI GGWCC 1 cut(s) 903
SlaI CTCGAG 1 cut(s) 235
SmiMI CAYNNNNRTG 1 cut(s) 597
SmlI CTYRAG 2 cut(s) 235, 666
SmoI CTYRAG 2 cut(s) 235, 666
SpeI ACTAGT 1 cut(s) 425
SphI GCATGC 1 cut(s) 143
SsiI CCGC 1 cut(s) 356
SspI AATATT 2 cut(s) 191, 535
TaaI ACNGT 1 cut(s) 910
TaiI ACGT 3 cut(s) 314, 816, 877
TaqI TCGA 2 cut(s) 236, 1148
TatI WGTACW 4 cut(s) 428, 589, 683, 1093
TauI GCSGC 1 cut(s) 359
TfiI GAWTC 4 cut(s) 282, 746, 932, 1013
Tru1I TTAA 2 cut(s) 531, 882
Tru9I TTAA 2 cut(s) 531, 882
TscAI CASTG 1 cut(s) 418
TseFI GTSAC 1 cut(s) 887
TseI GCWGC 2 cut(s) 198, 1166
Tsp45I GTSAC 1 cut(s) 887
TspDTI ATGAA 8 cut(s) 154, 173, 315, 664, 849, 912, 1023, 1176
TspRI CASTG 1 cut(s) 418
VpaK11BI GGWCC 1 cut(s) 903
VspI ATTAAT 1 cut(s) 531
XapI RAATTY 2 cut(s) 78, 688
XbaI TCTAGA 1 cut(s) 458
XceI RCATGY 2 cut(s) 143, 1253
XhoI CTCGAG 1 cut(s) 235
XmiI GTMKAC 1 cut(s) 871
ZrmI AGTACT 2 cut(s) 430, 1095
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.