Rroxscaffold_3G00270160

F-box domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000369
Physical Location & Seq
Forward (+)
62798154 .. 62799119
966 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00270160.1

Sequence Viewer

Length: 438 bp
ATGGGAATCGAAGTAAGCAAACTAGTAAAAAGGAGAGATTCTTCTACCAGCAAACAAGTAATAGTACCATCTTCTGTGGCCGAGAATGAAGATCTCGTAAGAGAGATCCTCTCAAAATTACCTGTCAAATCTCTAGTTAGGTTTAGATGCGTATCAAAAGAGTGGTTTGCTCTCCTAAACCAAGAGTTTATTCTGAAGATCAACCGAAATTACCTTCCCAATCTTTGTTTACTCTACGGTCAGAATGTTGAAAGTGGACATCTTCATCATCAGTTCTCATTGCTTGGCAGAAAAGTCAACACACTTTCGAGACTAGAGTTACCTGCATTTGTCCTGGATGAGTGTTTGAGAAGATATATATTGTGGGATCTGATCGGGGAGAAGAAGAATCAAACACTTGTTGGTTTTGGATGCATTAAAGACCATGGCATGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

145

Amino Acids

16.71

Weight (kDa)

9.41

Isoelectric Point (pI)

45.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 30 - 60 4.4e-08 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis pycom17g23320
rosa_chinensis RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 331
AclWI GGATC 2 cut(s) 100, 375
AcoI YGGCCR 1 cut(s) 78
AcuI CTGAAG 1 cut(s) 215
AfaI GTAC 1 cut(s) 66
AgsI TTSAA 1 cut(s) 251
AhlI ACTAGT 1 cut(s) 22
AjnI CCWGG 1 cut(s) 333
AjuI GAANNNNNNNTTGG 2 cut(s) 174, 206
Alw26I GTCTC 1 cut(s) 304
AlwI GGATC 2 cut(s) 100, 375
AoxI GGCC 1 cut(s) 78
BccI CCATC 1 cut(s) 76
BciT130I CCWGG 1 cut(s) 335
BcoDI GTCTC 1 cut(s) 304
BcuI ACTAGT 1 cut(s) 22
BfaI CTAG 3 cut(s) 23, 134, 314
BfuAI ACCTGC 1 cut(s) 331
BglII AGATCT 1 cut(s) 91
Bme1390I CCNGG 1 cut(s) 335
BmrFI CCNGG 1 cut(s) 335
BmsI GCATC 2 cut(s) 137, 401
BplI GAGNNNNNCTC 4 cut(s) 93, 125, 95, 127
BsaBI GATNNNNATC 1 cut(s) 151
BsaJI CCNNGG 1 cut(s) 424
Bse3DI GCAATG 1 cut(s) 278
Bse8I GATNNNNATC 1 cut(s) 151
BseBI CCWGG 1 cut(s) 335
BseDI CCNNGG 1 cut(s) 424
BseGI GGATG 2 cut(s) 343, 416
BseJI GATNNNNATC 1 cut(s) 151
BseMI GCAATG 1 cut(s) 278
BshFI GGCC 1 cut(s) 80
BsmAI GTCTC 1 cut(s) 304
BsnI GGCC 1 cut(s) 80
Bsp143I GATC 5 cut(s) 91, 105, 198, 367, 372
Bsp19I CCATGG 1 cut(s) 424
BspANI GGCC 1 cut(s) 80
BspMI ACCTGC 1 cut(s) 331
BspPI GGATC 2 cut(s) 100, 375
BsrDI GCAATG 1 cut(s) 278
BssECI CCNNGG 1 cut(s) 424
BssMI GATC 5 cut(s) 91, 105, 198, 367, 372
BssT1I CCWWGG 1 cut(s) 424
Bst2UI CCWGG 1 cut(s) 335
Bst4CI ACNGT 1 cut(s) 239
BstDSI CCRYGG 1 cut(s) 424
BstF5I GGATG 2 cut(s) 343, 416
BstKTI GATC 5 cut(s) 94, 108, 201, 370, 375
BstMAI GTCTC 1 cut(s) 304
BstMBI GATC 5 cut(s) 91, 105, 198, 367, 372
BstNI CCWGG 1 cut(s) 335
BstSCI CCNGG 1 cut(s) 333
BstX2I RGATCY 3 cut(s) 91, 105, 367
BstYI RGATCY 3 cut(s) 91, 105, 367
BsuRI GGCC 1 cut(s) 80
BtgI CCRYGG 1 cut(s) 424
BtsCI GGATG 2 cut(s) 343, 416
BveI ACCTGC 1 cut(s) 331
Csp6I GTAC 1 cut(s) 65
CviAII CATG 2 cut(s) 425, 430
CviJI RGCY 1 cut(s) 80
CviKI_1 RGCY 1 cut(s) 80
CviQI GTAC 1 cut(s) 65
DpnI GATC 5 cut(s) 93, 107, 200, 369, 374
DpnII GATC 5 cut(s) 91, 105, 198, 367, 372
EaeI YGGCCR 1 cut(s) 78
Eco130I CCWWGG 1 cut(s) 424
Eco57I CTGAAG 1 cut(s) 215
EcoRII CCWGG 1 cut(s) 333
EcoT14I CCWWGG 1 cut(s) 424
EcoT22I ATGCAT 1 cut(s) 416
ErhI CCWWGG 1 cut(s) 424
FaeI CATG 2 cut(s) 428, 433
FaiI YATR 4 cut(s) 357, 359, 426, 431
FatI CATG 2 cut(s) 424, 429
FokI GGATG 2 cut(s) 350, 423
FspBI CTAG 3 cut(s) 23, 134, 314
HaeIII GGCC 1 cut(s) 80
Hin1II CATG 2 cut(s) 428, 433
HincII GTYRAC 1 cut(s) 298
HindII GTYRAC 1 cut(s) 298
HinfI GANTC 3 cut(s) 6, 38, 388
Hpy166II GTNNAC 3 cut(s) 230, 257, 298
Hpy188I TCNGA 3 cut(s) 195, 243, 372
Hpy188III TCNNGA 1 cut(s) 309
Hpy8I GTNNAC 3 cut(s) 230, 257, 298
HpyAV CCTTC 1 cut(s) 224
HpyCH4III ACNGT 1 cut(s) 239
HpyCH4V TGCA 2 cut(s) 326, 414
Hsp92II CATG 2 cut(s) 428, 433
Kzo9I GATC 5 cut(s) 91, 105, 198, 367, 372
LpnPI CCDG 5 cut(s) 61, 135, 320, 336, 347
LweI GCATC 2 cut(s) 137, 401
MaeI CTAG 3 cut(s) 23, 134, 314
MaeIII GTNAC 1 cut(s) 318
MalI GATC 5 cut(s) 93, 107, 200, 369, 374
MboI GATC 5 cut(s) 91, 105, 198, 367, 372
MboII GAAGA 8 cut(s) 33, 63, 101, 208, 254, 363, 394, 397
MflI RGATCY 3 cut(s) 91, 105, 367
MluCI AATT 2 cut(s) 116, 208
MnlI CCTC 1 cut(s) 119
Mph1103I ATGCAT 1 cut(s) 416
MseI TTAA 1 cut(s) 417
MspR9I CCNGG 1 cut(s) 335
MvaI CCWGG 1 cut(s) 335
NcoI CCATGG 1 cut(s) 424
NdeII GATC 5 cut(s) 91, 105, 198, 367, 372
NlaIII CATG 2 cut(s) 428, 433
NmeAIII GCCGAG 1 cut(s) 106
NsiI ATGCAT 1 cut(s) 416
PfeI GAWTC 3 cut(s) 6, 38, 388
PfoI TCCNGGA 1 cut(s) 333
Psp6I CCWGG 1 cut(s) 333
PspGI CCWGG 1 cut(s) 333
PsuI RGATCY 3 cut(s) 91, 105, 367
RsaI GTAC 1 cut(s) 66
RsaNI GTAC 1 cut(s) 65
SaqAI TTAA 1 cut(s) 417
Sau3AI GATC 5 cut(s) 91, 105, 198, 367, 372
ScrFI CCNGG 1 cut(s) 335
SetI ASST 4 cut(s) 124, 143, 216, 325
SfaNI GCATC 2 cut(s) 137, 401
SpeI ACTAGT 1 cut(s) 22
Sse9I AATT 2 cut(s) 116, 208
SspMI CTAG 3 cut(s) 23, 134, 314
StyD4I CCNGG 1 cut(s) 333
StyI CCWWGG 1 cut(s) 424
TaaI ACNGT 1 cut(s) 239
TaqI TCGA 2 cut(s) 9, 308
TasI AATT 2 cut(s) 116, 208
TfiI GAWTC 3 cut(s) 6, 38, 388
Tru1I TTAA 1 cut(s) 417
Tru9I TTAA 1 cut(s) 417
TspDTI ATGAA 2 cut(s) 102, 254
XspI CTAG 3 cut(s) 23, 134, 314
Zsp2I ATGCAT 1 cut(s) 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.