MD14G1060300.v1.1

F-Box protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Reverse (-)
6377515 .. 6378876
1362 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1060300.v1.1.491

Sequence Viewer

Length: 1362 bp
ATGTTTGGAGGCAAAATGCAGGAGCGTGATGAGTCGGTTATCATCAACGGTGAGGTTAACCAAGGAAAACTATCCTTGATCAAGTGTTTACACCAAGATGTCCTAGTAGAAATTCTCTCAAAACTACCTGCAAAGTCTTTGATTAGATTTTCATGTGTCTCAAAAGCGTGGTATGCGCTTACCAAAAGTTCTTATTTCATTGCTAGACACCTTCATCGCTCTGCTATCAATCCTTTTGTTCTCCTTGTTTCGGGAGTTAGCACTGAAAAATATAAACCGAAATCACTTGGAGTCGCATTGCTTTGTGACGAAGAAACTCCACTTTTGAGTTTGGATTTACCGTTTCTCCCGAACTATGCAAGCTTTAACATAGTGGGATCCAGTAATGGTTTGGTTTGCGGTATTGTGCGAATTTGTAATGAGACGCAGGAGGAGGAGGAGGAGGAGGACGACGACGACGACGACGACGAGGATGAGGAGGGGGACGAGGGGGATGAGGGGGACGAGGAGGAGGAGGAGGGGGTCGAGGAGGACTATGTTGATTCAATAGTAGTATGGAATCCAGCAACAAAACAATTTAGGTATCTTCCGGAACCTGTTCTTTTCTCTCACAGACGGTGTCCTCAACGTATATGGGATGGTAAAAATGATCCTCTTCTAGGTTTTGATTTCGTACGAGAAATAAATCAATACAAAGTGGTGAGAGTTCTCCCGACACGTAATGGTGATGATGGAGAAATAGTTACTTTCGAAGCCCAAGTGTTCCTCCAGAGTACAAATTCATGGAGAGAAGTCGAAAACAAATTGGAGTTTCCATCATTTAAAAGATGTTTCACTAGTTGGGCGATTACCTTGAATGGAGTCTTGTATTGTTTGGTACTGCAGACGGGGTACGAGCTCGCTATTCTTTCGTTCAACTTACACGACGAGGTTTTCCATGTGATGCATCTGCCAGGAGAATTGCAGGATTTCAAGCACCTGGCACCATTATTCTCATGGAATAATTCAGTTGCAATTCTAACAACTACGTCTTCATTAGATGATGAATATTACGACCAAGTGCTTTGGGTGATGAGTAGTAGCACTACCACTGCGACGACCAAGCCAGCTTGGGTTCGACAATTGATAAGCAGATCCAAAGCATTTGCAGCAGGACGCTTGTTTGTAGGTGTATGGAAGGATCAACATATTTTACTCACAAGAAAACAAACACACGAAGAAGAAACAAATGATGTTGTGCCGCCGGAAAACTTGTTCGTGTATGACCCTAGAAGTGAGACGCAGAGAAAGATTCTCAATCATGGAGAAATGAACTTGTTTGGTATCGGAGTAAATTATGTGGAGAGCCTAATTCCTGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

454

Amino Acids

51.63

Weight (kDa)

4.67

Isoelectric Point (pI)

51.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 29 - 66 4.5e-10 F-box domain
F-box-like PF12937 33 - 71 3.8e-07 F-box-like
FBA_1 PF07734 181 - 452 1.6e-15 F-box associated beta propeller domain
FBA_3 PF08268 183 - 431 3.9e-17 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis pycom17g23320
rosa_chinensis RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 136
AccB1I GGYRCC 1 cut(s) 982
AccIII TCCGGA 1 cut(s) 589
AciI CCGC 2 cut(s) 399, 1241
AclWI GGATC 5 cut(s) 372, 385, 644, 1128, 1188
AcsI RAATTY 3 cut(s) 111, 411, 778
AfaI GTAC 4 cut(s) 675, 775, 879, 893
AfiI CCNNNNNNNGG 2 cut(s) 250, 659
AflIII ACRYGT 1 cut(s) 716
AgsI TTSAA 4 cut(s) 546, 856, 916, 973
AhlI ACTAGT 1 cut(s) 836
AjnI CCWGG 2 cut(s) 952, 978
AloI GAACNNNNNNTCC 2 cut(s) 1238, 1270
AluBI AGCT 3 cut(s) 363, 898, 1109
AluI AGCT 3 cut(s) 363, 898, 1109
Alw21I GWGCWC 1 cut(s) 900
Alw26I GTCTC 3 cut(s) 163, 416, 1271
AlwI GGATC 5 cut(s) 372, 385, 644, 1128, 1188
Aor13HI TCCGGA 1 cut(s) 589
ApeKI GCWGC 1 cut(s) 1148
ApoI RAATTY 3 cut(s) 111, 411, 778
Asp700I GAANNNNTTC 1 cut(s) 597
AspLEI GCGC 1 cut(s) 178
AsuHPI GGTGA 4 cut(s) 62, 712, 737, 1081
AsuII TTCGAA 1 cut(s) 750
BamHI GGATCC 1 cut(s) 377
BanI GGYRCC 1 cut(s) 982
BanII GRGCYC 1 cut(s) 900
BbsI GAAGAC 1 cut(s) 1023
Bbv12I GWGCWC 1 cut(s) 900
BbvI GCAGC 1 cut(s) 1160
BccI CCATC 3 cut(s) 632, 725, 823
BciT130I CCWGG 2 cut(s) 954, 980
BclI TGATCA 1 cut(s) 78
BcoDI GTCTC 3 cut(s) 163, 416, 1271
BcuI ACTAGT 1 cut(s) 836
BfaI CTAG 6 cut(s) 104, 204, 659, 837, 1269, 1360
BfmI CTRYAG 1 cut(s) 881
BfuAI ACCTGC 1 cut(s) 136
BisI GCNGC 2 cut(s) 1149, 1241
BlsI GCNGC 2 cut(s) 1150, 1242
Bme1390I CCNGG 2 cut(s) 954, 980
BmiI GGNNCC 3 cut(s) 379, 594, 984
BmrFI CCNGG 2 cut(s) 954, 980
BmsI GCATC 2 cut(s) 933, 955
BpiI GAAGAC 1 cut(s) 1023
BpmI CTGGAG 1 cut(s) 752
Bpu14I TTCGAA 1 cut(s) 750
BsaAI YACGTR 1 cut(s) 719
BsaJI CCNNGG 1 cut(s) 61
BsaWI WCCGGW 1 cut(s) 589
BsaXI ACNNNNNCTCC 4 cut(s) 330, 360, 726, 756
Bsc4I CCNNNNNNNGG 2 cut(s) 250, 659
Bse1I ACTGG 1 cut(s) 381
Bse3DI GCAATG 2 cut(s) 198, 296
BseAI TCCGGA 1 cut(s) 589
BseBI CCWGG 2 cut(s) 954, 980
BseDI CCNNGG 1 cut(s) 61
BseGI GGATG 3 cut(s) 478, 499, 643
BseLI CCNNNNNNNGG 2 cut(s) 250, 659
BseMI GCAATG 2 cut(s) 198, 296
BseNI ACTGG 1 cut(s) 381
BseXI GCAGC 1 cut(s) 1160
BshNI GGYRCC 1 cut(s) 982
BsiHKAI GWGCWC 1 cut(s) 900
BsiSI CCGG 2 cut(s) 590, 1244
BsiWI CGTACG 1 cut(s) 673
BslFI GGGAC 2 cut(s) 497, 515
BslI CCNNNNNNNGG 2 cut(s) 250, 659
BsmAI GTCTC 3 cut(s) 163, 416, 1271
BsmBI CGTCTC 2 cut(s) 416, 1271
BsmFI GGGAC 2 cut(s) 497, 515
Bsp119I TTCGAA 1 cut(s) 750
Bsp1286I GDGCHC 1 cut(s) 900
Bsp13I TCCGGA 1 cut(s) 589
Bsp143I GATC 5 cut(s) 78, 377, 649, 1133, 1180
BspACI CCGC 2 cut(s) 399, 1241
BspEI TCCGGA 1 cut(s) 589
BspLI GGNNCC 3 cut(s) 379, 594, 984
BspMAI CTGCAG 1 cut(s) 885
BspMI ACCTGC 1 cut(s) 136
BspPI GGATC 5 cut(s) 372, 385, 644, 1128, 1188
BspT104I TTCGAA 1 cut(s) 750
BspT107I GGYRCC 1 cut(s) 982
BsrDI GCAATG 2 cut(s) 198, 296
BsrI ACTGG 1 cut(s) 381
BssECI CCNNGG 1 cut(s) 61
BssMI GATC 5 cut(s) 78, 377, 649, 1133, 1180
BssT1I CCWWGG 1 cut(s) 61
Bst2UI CCWGG 2 cut(s) 954, 980
Bst4CI ACNGT 3 cut(s) 50, 342, 618
Bst6I CTCTTC 1 cut(s) 660
BstBAI YACGTR 1 cut(s) 719
BstBI TTCGAA 1 cut(s) 750
BstC8I GCNNGC 3 cut(s) 361, 900, 1107
BstENI CCTNNNNNAGG 1 cut(s) 657
BstF5I GGATG 3 cut(s) 478, 499, 643
BstHHI GCGC 1 cut(s) 178
BstKTI GATC 5 cut(s) 81, 380, 652, 1136, 1183
BstMAI GTCTC 3 cut(s) 163, 416, 1271
BstMBI GATC 5 cut(s) 78, 377, 649, 1133, 1180
BstMWI GCNNNNNNNGC 2 cut(s) 173, 1148
BstNI CCWGG 2 cut(s) 954, 980
BstSCI CCNGG 2 cut(s) 952, 978
BstSFI CTRYAG 1 cut(s) 881
BstV1I GCAGC 1 cut(s) 1160
BstV2I GAAGAC 1 cut(s) 1023
BstX2I RGATCY 2 cut(s) 377, 1133
BstYI RGATCY 2 cut(s) 377, 1133
BtgZI GCGATG 1 cut(s) 200
BtsCI GGATG 3 cut(s) 478, 499, 643
BtsI GCAGTG 1 cut(s) 1089
BtsIMutI CAGTG 2 cut(s) 261, 1089
BveI ACCTGC 1 cut(s) 136
Cac8I GCNNGC 3 cut(s) 361, 900, 1107
CfoI GCGC 1 cut(s) 178
CseI GACGC 3 cut(s) 433, 1164, 1288
Csp6I GTAC 4 cut(s) 674, 774, 878, 892
CviAII CATG 5 cut(s) 153, 783, 938, 996, 1301
CviJI RGCY 6 cut(s) 363, 755, 898, 1105, 1109, 1347
CviKI_1 RGCY 6 cut(s) 363, 755, 898, 1105, 1109, 1347
CviQI GTAC 4 cut(s) 674, 774, 878, 892
DpnI GATC 5 cut(s) 80, 379, 651, 1135, 1182
DpnII GATC 5 cut(s) 78, 377, 649, 1133, 1180
DraI TTTAAA 1 cut(s) 823
Eam1104I CTCTTC 1 cut(s) 660
EarI CTCTTC 1 cut(s) 660
Ecl136II GAGCTC 1 cut(s) 898
Eco130I CCWWGG 1 cut(s) 61
Eco24I GRGCYC 1 cut(s) 900
Eco53kI GAGCTC 1 cut(s) 898
EcoICRI GAGCTC 1 cut(s) 898
EcoNI CCTNNNNNAGG 1 cut(s) 657
EcoRII CCWGG 2 cut(s) 952, 978
EcoT14I CCWWGG 1 cut(s) 61
EcoT22I ATGCAT 1 cut(s) 948
EcoT38I GRGCYC 1 cut(s) 900
ErhI CCWWGG 1 cut(s) 61
Esp3I CGTCTC 2 cut(s) 416, 1271
FaeI CATG 5 cut(s) 156, 786, 941, 999, 1304
FaqI GGGAC 2 cut(s) 497, 515
FatI CATG 5 cut(s) 152, 782, 937, 995, 1300
FbaI TGATCA 1 cut(s) 78
Fnu4HI GCNGC 2 cut(s) 1149, 1241
FokI GGATG 3 cut(s) 485, 506, 650
FriOI GRGCYC 1 cut(s) 900
Fsp4HI GCNGC 2 cut(s) 1149, 1241
FspBI CTAG 6 cut(s) 104, 204, 659, 837, 1269, 1360
GlaI GCGC 1 cut(s) 177
GluI GCNGC 2 cut(s) 1149, 1241
GsuI CTGGAG 1 cut(s) 752
HapII CCGG 2 cut(s) 590, 1244
HgaI GACGC 3 cut(s) 433, 1164, 1288
HhaI GCGC 1 cut(s) 178
Hin1II CATG 5 cut(s) 156, 786, 941, 999, 1304
Hin6I GCGC 1 cut(s) 176
HinP1I GCGC 1 cut(s) 176
HincII GTYRAC 1 cut(s) 58
HindII GTYRAC 1 cut(s) 58
HindIII AAGCTT 1 cut(s) 361
HinfI GANTC 6 cut(s) 32, 291, 542, 559, 861, 1291
HpaI GTTAAC 1 cut(s) 58
HpaII CCGG 2 cut(s) 590, 1244
HphI GGTGA 4 cut(s) 62, 712, 737, 1081
Hpy166II GTNNAC 2 cut(s) 58, 89
Hpy188I TCNGA 1 cut(s) 1328
Hpy188III TCNNGA 5 cut(s) 252, 349, 590, 712, 769
Hpy8I GTNNAC 2 cut(s) 58, 89
Hpy99I CGWCG 8 cut(s) 455, 458, 461, 464, 467, 470, 929, 1099
HpyAV CCTTC 2 cut(s) 221, 1171
HpyCH4III ACNGT 3 cut(s) 50, 342, 618
HpyCH4IV ACGT 3 cut(s) 628, 718, 1028
HpyCH4V TGCA 8 cut(s) 19, 131, 359, 883, 946, 964, 1013, 1148
HpyF10VI GCNNNNNNNGC 2 cut(s) 173, 1148
HpySE526I ACGT 3 cut(s) 628, 718, 1028
Hsp92II CATG 5 cut(s) 156, 786, 941, 999, 1304
HspAI GCGC 1 cut(s) 176
Kpn2I TCCGGA 1 cut(s) 589
Ksp22I TGATCA 1 cut(s) 78
KspAI GTTAAC 1 cut(s) 58
Kzo9I GATC 5 cut(s) 78, 377, 649, 1133, 1180
LmnI GCTCC 1 cut(s) 22
Lsp1109I GCAGC 1 cut(s) 1160
LweI GCATC 2 cut(s) 933, 955
MaeI CTAG 6 cut(s) 104, 204, 659, 837, 1269, 1360
MaeII ACGT 3 cut(s) 628, 718, 1028
MaeIII GTNAC 2 cut(s) 305, 742
MalI GATC 5 cut(s) 80, 379, 651, 1135, 1182
MboI GATC 5 cut(s) 78, 377, 649, 1133, 1180
MboII GAAGA 6 cut(s) 323, 578, 647, 1023, 1229, 1232
MfeI CAATTG 1 cut(s) 1121
MflI RGATCY 2 cut(s) 377, 1133
MhlI GDGCHC 1 cut(s) 900
MlyI GAGTC 3 cut(s) 41, 300, 870
Mph1103I ATGCAT 1 cut(s) 948
MroI TCCGGA 1 cut(s) 589
MroXI GAANNNNTTC 1 cut(s) 597
MseI TTAA 3 cut(s) 57, 366, 822
MslI CAYNNNNRTG 1 cut(s) 96
MspI CCGG 2 cut(s) 590, 1244
MspR9I CCNGG 2 cut(s) 954, 980
MunI CAATTG 1 cut(s) 1121
MvaI CCWGG 2 cut(s) 954, 980
MwoI GCNNNNNNNGC 2 cut(s) 173, 1148
NdeII GATC 5 cut(s) 78, 377, 649, 1133, 1180
NlaIII CATG 5 cut(s) 156, 786, 941, 999, 1304
NlaIV GGNNCC 3 cut(s) 379, 594, 984
NmuCI GTSAC 1 cut(s) 305
NsiI ATGCAT 1 cut(s) 948
NspV TTCGAA 1 cut(s) 750
PcsI WCGNNNNNNNCGW 4 cut(s) 456, 459, 462, 465
PdmI GAANNNNTTC 1 cut(s) 597
PfeI GAWTC 3 cut(s) 542, 559, 1291
Pfl23II CGTACG 1 cut(s) 673
PflFI GACNNNGTC 1 cut(s) 618
PkrI GCNGC 2 cut(s) 1150, 1242
PleI GAGTC 3 cut(s) 40, 299, 869
PpsI GAGTC 3 cut(s) 40, 299, 869
Ppu21I YACGTR 1 cut(s) 719
Psp124BI GAGCTC 1 cut(s) 900
Psp6I CCWGG 2 cut(s) 952, 978
PspGI CCWGG 2 cut(s) 952, 978
PspLI CGTACG 1 cut(s) 673
PspN4I GGNNCC 3 cut(s) 379, 594, 984
PstI CTGCAG 1 cut(s) 885
PsuI RGATCY 2 cut(s) 377, 1133
PsyI GACNNNGTC 1 cut(s) 618
RsaI GTAC 4 cut(s) 675, 775, 879, 893
RsaNI GTAC 4 cut(s) 674, 774, 878, 892
RseI CAYNNNNRTG 1 cut(s) 96
SacI GAGCTC 1 cut(s) 900
SaqAI TTAA 3 cut(s) 57, 366, 822
SatI GCNGC 2 cut(s) 1149, 1241
Sau3AI GATC 5 cut(s) 78, 377, 649, 1133, 1180
SchI GAGTC 3 cut(s) 41, 300, 870
ScrFI CCNGG 2 cut(s) 954, 980
SduI GDGCHC 1 cut(s) 900
SfaNI GCATC 2 cut(s) 933, 955
SfcI CTRYAG 1 cut(s) 881
SfuI TTCGAA 1 cut(s) 750
SmiMI CAYNNNNRTG 1 cut(s) 96
SpeI ACTAGT 1 cut(s) 836
SsiI CCGC 2 cut(s) 399, 1241
SspI AATATT 1 cut(s) 1049
SspMI CTAG 6 cut(s) 104, 204, 659, 837, 1269, 1360
SstI GAGCTC 1 cut(s) 900
StyD4I CCNGG 2 cut(s) 952, 978
StyI CCWWGG 1 cut(s) 61
TaaI ACNGT 3 cut(s) 50, 342, 618
TaiI ACGT 3 cut(s) 631, 721, 1031
TaqI TCGA 4 cut(s) 525, 750, 795, 1117
TatI WGTACW 1 cut(s) 773
TauI GCSGC 1 cut(s) 1243
TfiI GAWTC 3 cut(s) 542, 559, 1291
Tru1I TTAA 3 cut(s) 57, 366, 822
Tru9I TTAA 3 cut(s) 57, 366, 822
TscAI CASTG 2 cut(s) 268, 1096
TseFI GTSAC 1 cut(s) 305
TseI GCWGC 1 cut(s) 1148
Tsp45I GTSAC 1 cut(s) 305
TspDTI ATGAA 7 cut(s) 141, 187, 203, 771, 1023, 1059, 1325
TspRI CASTG 2 cut(s) 268, 1096
Tth111I GACNNNGTC 1 cut(s) 618
XagI CCTNNNNNAGG 1 cut(s) 657
XapI RAATTY 3 cut(s) 111, 411, 778
XcmI CCANNNNNNNNNTGG 2 cut(s) 388, 993
XmnI GAANNNNTTC 1 cut(s) 597
XspI CTAG 6 cut(s) 104, 204, 659, 837, 1269, 1360
Zsp2I ATGCAT 1 cut(s) 948
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.