RH6AG301500

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: Sequence Only
Biological Identity
rosa_samantha
Unknown
OG0000369
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG301500.1

Sequence Viewer

Length: 1164 bp
ATGGAAACTGGAGCTAGTTTTTTGGCTATAGCTGATGAAAGTATTCTAGTAGAAATTCTCTTAAGATTGCCTCTCAAGTCTATATGTAGGTTTAGGTGTGTATCAAAAGAGTGGGATTATCTCACCAAAACTAGTAATTTCCTGGACAGACATCGTCTTCACAGCTCTCGCCGTCTTCTCCTCATCTCCTCATCCTCTCTTGCTGCCGGAATTGGTAATAAGAAAGTTGGAATCTCATTACTTGCTGACGAAAAAACGGCAGTTTCAAGTTTGAGTGTACCTTTCCTCCCCAACGATGCAAGATGGGATTTAAAATTTGTGGGATCTAGTAATGGGTTAGTTTGTTGCGTTACCTTGCTTAAGGGTACTCGAATAGCCACAGTAGTATGGAACCCAGCAACAGACCAATTTAATTATTTTCCTATTGTTTTGGAGAAAAGAGTTGAGAATGCTACTTATTACCATCGTCTGATCGTAGGTTTTGATTTCATGCATAGCACCAATGTGTACAAAATGGTGGAAGTTTTCCCATATGGTAGTGATGATCCGGATGATCCCCTAAAACTTGGTTTTGGAGCCGCAGTCTTCACCCAGAATACACCTTCTTGGAGAGTAGTTGAGTCGAGAATTGGACTTGCATCATGTAAAATGTGTTATACAAATCAGTCTACTACCTTGAATGGAGTGCTGTATTGGTTGGTAGAGCATACATCCAATGGATTTGCTGTCGTTTCGTTTAGTTTACATGATGAGGCCTTCAAGGATATATGTAAATCACTACCAGAAGAAATATGCTATGTCAGTGACAATAGCATCCTCCCAACATTAGTTTCATGGAGAAATTCACTTGCAGTTGTAGGTGTGGATCAGGGTGACAACTTAGTGCTTTGGGTGGACAGTACTGCTGATCAGGAATCTGATTGGATTGAACAAATGAGAATCAGATGGCCGTCGCTATGTGAAGGAAGTTGGTTGTTATTGAGAGGAGTTTGGAAGGATCAATTTGTTTTCAGCAAAAAAGGATATGAAGTTGGTGCACATAATGAACCGGACAACCTGTTTTTGTATAACCCTATAACCGAGGCATTGAGAAAGGTACATGGAGAAAGAAACAATTTTTTTAGATTTGCAGTAAGTTATGCAGAGAGCAATGTCAAGCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

387

Amino Acids

43.7

Weight (kDa)

6.1

Isoelectric Point (pI)

30.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 15 - 47 6.4e-06 F-box domain
FBA_3 PF08268 91 - 369 1.4e-15 F-box associated beta propeller domain
FBA_1 PF07734 101 - 385 1.1e-18 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis pycom17g23320
rosa_chinensis RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 668
AccIII TCCGGA 1 cut(s) 547
AciI CCGC 1 cut(s) 579
AclWI GGATC 5 cut(s) 331, 539, 548, 873, 1005
AcoI YGGCCR 1 cut(s) 947
AcsI RAATTY 3 cut(s) 54, 314, 841
AfaI GTAC 5 cut(s) 279, 367, 509, 901, 1098
AflII CTTAAG 2 cut(s) 61, 359
AgsI TTSAA 4 cut(s) 267, 679, 760, 929
AhlI ACTAGT 1 cut(s) 131
AjnI CCWGG 1 cut(s) 141
AjuI GAANNNNNNNTTGG 2 cut(s) 814, 846
AleI CACNNNNGTG 1 cut(s) 503
AluBI AGCT 3 cut(s) 14, 32, 165
AluI AGCT 3 cut(s) 14, 32, 165
Alw21I GWGCWC 1 cut(s) 1039
Alw44I GTGCAC 1 cut(s) 1035
AlwI GGATC 5 cut(s) 331, 539, 548, 873, 1005
Aor13HI TCCGGA 1 cut(s) 547
AoxI GGCC 2 cut(s) 753, 947
ApaLI GTGCAC 1 cut(s) 1035
ApeKI GCWGC 1 cut(s) 203
ApoI RAATTY 3 cut(s) 54, 314, 841
Asp700I GAANNNNTTC 1 cut(s) 42
AsuHPI GGTGA 3 cut(s) 115, 580, 884
BaeGI GKGCMC 1 cut(s) 1039
BbsI GAAGAC 3 cut(s) 149, 167, 577
Bbv12I GWGCWC 1 cut(s) 1039
BbvI GCAGC 1 cut(s) 190
BccI CCATC 3 cut(s) 297, 471, 939
BceAI ACGGC 3 cut(s) 156, 273, 934
BciT130I CCWGG 1 cut(s) 143
BclI TGATCA 1 cut(s) 907
BcuI ACTAGT 1 cut(s) 131
BfaI CTAG 4 cut(s) 15, 47, 132, 327
BfmI CTRYAG 1 cut(s) 27
BfrI CTTAAG 2 cut(s) 61, 359
BisI GCNGC 2 cut(s) 204, 579
BlsI GCNGC 2 cut(s) 205, 580
BmcAI AGTACT 1 cut(s) 901
Bme1390I CCNGG 1 cut(s) 143
BmiI GGNNCC 2 cut(s) 392, 577
BmrFI CCNGG 1 cut(s) 143
BmsI GCATC 3 cut(s) 286, 647, 822
BpiI GAAGAC 3 cut(s) 149, 167, 577
BpmI CTGGAG 1 cut(s) 30
BpuEI CTTGAG 1 cut(s) 59
BsaJI CCNNGG 1 cut(s) 1080
BsaWI WCCGGW 2 cut(s) 547, 1048
BsaXI ACNNNNNCTCC 4 cut(s) 270, 300, 567, 597
Bse1I ACTGG 1 cut(s) 13
Bse3DI GCAATG 1 cut(s) 1156
BseAI TCCGGA 1 cut(s) 547
BseBI CCWGG 1 cut(s) 143
BseDI CCNNGG 1 cut(s) 1080
BseGI GGATG 4 cut(s) 191, 556, 710, 813
BseMI GCAATG 1 cut(s) 1156
BseNI ACTGG 1 cut(s) 13
BseRI GAGGAG 3 cut(s) 170, 178, 999
BseSI GKGCMC 1 cut(s) 1039
BseXI GCAGC 1 cut(s) 190
BseYI CCCAGC 1 cut(s) 394
BshFI GGCC 2 cut(s) 755, 949
BsiHKAI GWGCWC 1 cut(s) 1039
BsiSI CCGG 3 cut(s) 207, 548, 1049
BsmI GAATGC 1 cut(s) 454
BsnI GGCC 2 cut(s) 755, 949
Bsp1286I GDGCHC 1 cut(s) 1039
Bsp13I TCCGGA 1 cut(s) 547
Bsp1407I TGTACA 1 cut(s) 507
Bsp143I GATC 7 cut(s) 323, 471, 544, 553, 865, 907, 997
BspACI CCGC 1 cut(s) 579
BspANI GGCC 2 cut(s) 755, 949
BspEI TCCGGA 1 cut(s) 547
BspLI GGNNCC 2 cut(s) 392, 577
BspPI GGATC 5 cut(s) 331, 539, 548, 873, 1005
BspTI CTTAAG 2 cut(s) 61, 359
BsrDI GCAATG 1 cut(s) 1156
BsrGI TGTACA 1 cut(s) 507
BsrI ACTGG 1 cut(s) 13
BssECI CCNNGG 1 cut(s) 1080
BssMI GATC 7 cut(s) 323, 471, 544, 553, 865, 907, 997
Bst2UI CCWGG 1 cut(s) 143
Bst4CI ACNGT 2 cut(s) 382, 899
BstAFI CTTAAG 2 cut(s) 61, 359
BstAUI TGTACA 1 cut(s) 507
BstDEI CTNAG 1 cut(s) 880
BstF5I GGATG 4 cut(s) 191, 556, 710, 813
BstKTI GATC 7 cut(s) 326, 474, 547, 556, 868, 910, 1000
BstMBI GATC 7 cut(s) 323, 471, 544, 553, 865, 907, 997
BstNI CCWGG 1 cut(s) 143
BstSCI CCNGG 1 cut(s) 141
BstSFI CTRYAG 1 cut(s) 27
BstSLI GKGCMC 1 cut(s) 1039
BstV1I GCAGC 1 cut(s) 190
BstV2I GAAGAC 3 cut(s) 149, 167, 577
BstX2I RGATCY 1 cut(s) 323
BstYI RGATCY 1 cut(s) 323
BsuRI GGCC 2 cut(s) 755, 949
BtsCI GGATG 4 cut(s) 191, 556, 710, 813
BtsIMutI CAGTG 1 cut(s) 808
Csp6I GTAC 5 cut(s) 278, 366, 508, 900, 1097
CviAII CATG 5 cut(s) 490, 642, 746, 834, 1100
CviJI RGCY 9 cut(s) 14, 26, 32, 165, 377, 578, 755, 949, 1159
CviKI_1 RGCY 9 cut(s) 14, 26, 32, 165, 377, 578, 755, 949, 1159
CviQI GTAC 5 cut(s) 278, 366, 508, 900, 1097
DdeI CTNAG 1 cut(s) 880
DpnI GATC 7 cut(s) 325, 473, 546, 555, 867, 909, 999
DpnII GATC 7 cut(s) 323, 471, 544, 553, 865, 907, 997
DraI TTTAAA 1 cut(s) 312
EaeI YGGCCR 1 cut(s) 947
Eco147I AGGCCT 1 cut(s) 755
EcoRII CCWGG 1 cut(s) 141
EcoT22I ATGCAT 1 cut(s) 495
FaeI CATG 5 cut(s) 493, 645, 749, 837, 1103
FatI CATG 5 cut(s) 489, 641, 745, 833, 1099
FauNDI CATATG 1 cut(s) 532
FbaI TGATCA 1 cut(s) 907
FblI GTMKAC 1 cut(s) 668
Fnu4HI GCNGC 2 cut(s) 204, 579
FokI GGATG 4 cut(s) 178, 563, 697, 800
Fsp4HI GCNGC 2 cut(s) 204, 579
FspBI CTAG 4 cut(s) 15, 47, 132, 327
GluI GCNGC 2 cut(s) 204, 579
GsaI CCCAGC 1 cut(s) 398
GsuI CTGGAG 1 cut(s) 30
HaeIII GGCC 2 cut(s) 755, 949
HapII CCGG 3 cut(s) 207, 548, 1049
Hin1II CATG 5 cut(s) 493, 645, 749, 837, 1103
HinfI GANTC 4 cut(s) 231, 620, 914, 939
HpaII CCGG 3 cut(s) 207, 548, 1049
HphI GGTGA 3 cut(s) 115, 580, 884
Hpy166II GTNNAC 6 cut(s) 278, 508, 669, 743, 895, 1037
Hpy188I TCNGA 3 cut(s) 471, 919, 944
Hpy188III TCNNGA 3 cut(s) 548, 624, 911
Hpy8I GTNNAC 6 cut(s) 278, 508, 669, 743, 895, 1037
Hpy99I CGWCG 1 cut(s) 955
HpyAV CCTTC 4 cut(s) 612, 766, 956, 988
HpyCH4III ACNGT 2 cut(s) 382, 899
HpyCH4V TGCA 7 cut(s) 299, 493, 638, 851, 1037, 1130, 1142
HpyF3I CTNAG 1 cut(s) 880
Hsp92II CATG 5 cut(s) 493, 645, 749, 837, 1103
Kpn2I TCCGGA 1 cut(s) 547
Ksp22I TGATCA 1 cut(s) 907
Kzo9I GATC 7 cut(s) 323, 471, 544, 553, 865, 907, 997
LmnI GCTCC 2 cut(s) 11, 575
Lsp1109I GCAGC 1 cut(s) 190
LweI GCATC 3 cut(s) 286, 647, 822
MaeI CTAG 4 cut(s) 15, 47, 132, 327
MaeIII GTNAC 3 cut(s) 349, 803, 872
MalI GATC 7 cut(s) 325, 473, 546, 555, 867, 909, 999
MboI GATC 7 cut(s) 323, 471, 544, 553, 865, 907, 997
MboII GAAGA 4 cut(s) 149, 167, 577, 797
MflI RGATCY 1 cut(s) 323
MhlI GDGCHC 1 cut(s) 1039
MlyI GAGTC 1 cut(s) 629
MmeI TCCRAC 1 cut(s) 208
MnlI CCTC 9 cut(s) 81, 191, 199, 205, 296, 745, 827, 977, 1075
Mph1103I ATGCAT 1 cut(s) 495
MroI TCCGGA 1 cut(s) 547
MroXI GAANNNNTTC 1 cut(s) 42
MseI TTAA 4 cut(s) 62, 311, 360, 411
MslI CAYNNNNRTG 1 cut(s) 503
MspCI CTTAAG 2 cut(s) 61, 359
MspI CCGG 3 cut(s) 207, 548, 1049
MspR9I CCNGG 1 cut(s) 143
Mva1269I GAATGC 1 cut(s) 454
MvaI CCWGG 1 cut(s) 143
NdeI CATATG 1 cut(s) 532
NdeII GATC 7 cut(s) 323, 471, 544, 553, 865, 907, 997
NlaIII CATG 5 cut(s) 493, 645, 749, 837, 1103
NlaIV GGNNCC 2 cut(s) 392, 577
NmuCI GTSAC 2 cut(s) 803, 872
NsiI ATGCAT 1 cut(s) 495
OliI CACNNNNGTG 1 cut(s) 503
PceI AGGCCT 1 cut(s) 755
PctI GAATGC 1 cut(s) 454
PdmI GAANNNNTTC 1 cut(s) 42
PfeI GAWTC 3 cut(s) 231, 914, 939
PflFI GACNNNGTC 1 cut(s) 153
PfoI TCCNGGA 1 cut(s) 141
PkrI GCNGC 2 cut(s) 205, 580
PleI GAGTC 1 cut(s) 628
PpsI GAGTC 1 cut(s) 628
Psp6I CCWGG 1 cut(s) 141
PspFI CCCAGC 1 cut(s) 394
PspGI CCWGG 1 cut(s) 141
PspN4I GGNNCC 2 cut(s) 392, 577
PsuI RGATCY 1 cut(s) 323
PsyI GACNNNGTC 1 cut(s) 153
RsaI GTAC 5 cut(s) 279, 367, 509, 901, 1098
RsaNI GTAC 5 cut(s) 278, 366, 508, 900, 1097
RseI CAYNNNNRTG 1 cut(s) 503
SaqAI TTAA 4 cut(s) 62, 311, 360, 411
SatI GCNGC 2 cut(s) 204, 579
Sau3AI GATC 7 cut(s) 323, 471, 544, 553, 865, 907, 997
ScaI AGTACT 1 cut(s) 901
SchI GAGTC 1 cut(s) 629
ScrFI CCNGG 1 cut(s) 143
SduI GDGCHC 1 cut(s) 1039
SfaNI GCATC 3 cut(s) 286, 647, 822
SfcI CTRYAG 1 cut(s) 27
SmiMI CAYNNNNRTG 1 cut(s) 503
SmlI CTYRAG 3 cut(s) 61, 74, 359
SmoI CTYRAG 3 cut(s) 61, 74, 359
SpeI ACTAGT 1 cut(s) 131
SseBI AGGCCT 1 cut(s) 755
SsiI CCGC 1 cut(s) 579
SspMI CTAG 4 cut(s) 15, 47, 132, 327
StuI AGGCCT 1 cut(s) 755
StyD4I CCNGG 1 cut(s) 141
TaaI ACNGT 2 cut(s) 382, 899
TaqI TCGA 2 cut(s) 370, 623
TatI WGTACW 2 cut(s) 507, 899
TauI GCSGC 1 cut(s) 581
TfiI GAWTC 3 cut(s) 231, 914, 939
Tru1I TTAA 4 cut(s) 62, 311, 360, 411
Tru9I TTAA 4 cut(s) 62, 311, 360, 411
TscAI CASTG 1 cut(s) 808
TseFI GTSAC 2 cut(s) 803, 872
TseI GCWGC 1 cut(s) 203
Tsp45I GTSAC 2 cut(s) 803, 872
TspDTI ATGAA 5 cut(s) 51, 478, 822, 1041, 1059
TspRI CASTG 1 cut(s) 808
Tth111I GACNNNGTC 1 cut(s) 153
Vha464I CTTAAG 2 cut(s) 61, 359
VneI GTGCAC 1 cut(s) 1035
XapI RAATTY 3 cut(s) 54, 314, 841
XmiI GTMKAC 1 cut(s) 668
XmnI GAANNNNTTC 1 cut(s) 42
XspI CTAG 4 cut(s) 15, 47, 132, 327
ZrmI AGTACT 1 cut(s) 901
Zsp2I ATGCAT 1 cut(s) 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.