Rh2CG148800

F-Box protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Reverse (-)
13010705 .. 13011016
312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG148800.1

Sequence Viewer

Length: 312 bp
ATGAAAATCGAAGGAAGAAGCGAAGTAAAGGTAAGAAGCACTTCTCTTACTGATGATGGTTTAGCAGAAATACTGTCAAGATTACCAATGAAGTCTTTACTTAGGTTTATGTGTGTATCAAAGGAGTGGCATGCTCTCATAAAAAGCTCTTATTTCACTGCCATTCATCTTGAACGCTTGGATCGCAACCTCTCCCTTGTCTTTAAGAGTAAGTTAACAAAAGATGGCTATGAATTTGCAATGTCATTGCTTCGCAATGAGTCAACACCCAATTTGAGTTTGGATCTATCTGTCCTTGACTGTACAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

103

Amino Acids

11.75

Weight (kDa)

8.64

Isoelectric Point (pI)

42.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 15 - 52 2.9e-10 F-box domain
F-box-like PF12937 21 - 50 4.1e-06 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis pycom17g23320
rosa_chinensis RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 189, 291
AcsI RAATTY 1 cut(s) 233
AfaI GTAC 1 cut(s) 304
AgsI TTSAA 1 cut(s) 173
AluBI AGCT 1 cut(s) 147
AluI AGCT 1 cut(s) 147
AlwI GGATC 2 cut(s) 189, 291
ApoI RAATTY 1 cut(s) 233
Asp700I GAANNNNTTC 1 cut(s) 40
BccI CCATC 2 cut(s) 50, 218
Bse3DI GCAATG 3 cut(s) 245, 246, 262
BseMI GCAATG 3 cut(s) 245, 246, 262
Bsp1407I TGTACA 1 cut(s) 302
Bsp143I GATC 2 cut(s) 181, 283
BspPI GGATC 2 cut(s) 189, 291
BsrDI GCAATG 3 cut(s) 245, 246, 262
BsrGI TGTACA 1 cut(s) 302
BssMI GATC 2 cut(s) 181, 283
Bst4CI ACNGT 2 cut(s) 75, 302
BstAUI TGTACA 1 cut(s) 302
BstC8I GCNNGC 1 cut(s) 132
BstDEI CTNAG 1 cut(s) 101
BstKTI GATC 2 cut(s) 184, 286
BstMBI GATC 2 cut(s) 181, 283
BstMWI GCNNNNNNNGC 1 cut(s) 183
BstNSI RCATGY 1 cut(s) 134
BstX2I RGATCY 1 cut(s) 283
BstYI RGATCY 1 cut(s) 283
BtsI GCAGTG 1 cut(s) 156
BtsIMutI CAGTG 1 cut(s) 156
Cac8I GCNNGC 1 cut(s) 132
Csp6I GTAC 1 cut(s) 303
CviAII CATG 1 cut(s) 131
CviJI RGCY 2 cut(s) 147, 228
CviKI_1 RGCY 2 cut(s) 147, 228
CviQI GTAC 1 cut(s) 303
DdeI CTNAG 1 cut(s) 101
DpnI GATC 2 cut(s) 183, 285
DpnII GATC 2 cut(s) 181, 283
FaeI CATG 1 cut(s) 134
FaiI YATR 4 cut(s) 110, 132, 140, 231
FalI AAGNNNNNCTT 2 cut(s) 25, 57
FatI CATG 1 cut(s) 130
Hin1II CATG 1 cut(s) 134
HincII GTYRAC 2 cut(s) 216, 264
HindII GTYRAC 2 cut(s) 216, 264
HinfI GANTC 1 cut(s) 260
HpaI GTTAAC 1 cut(s) 216
Hpy166II GTNNAC 2 cut(s) 216, 264
Hpy188I TCNGA 1 cut(s) 311
Hpy188III TCNNGA 2 cut(s) 78, 170
Hpy8I GTNNAC 2 cut(s) 216, 264
HpyAV CCTTC 1 cut(s) 5
HpyCH4III ACNGT 2 cut(s) 75, 302
HpyCH4V TGCA 1 cut(s) 239
HpyF10VI GCNNNNNNNGC 1 cut(s) 183
HpyF3I CTNAG 1 cut(s) 101
Hsp92II CATG 1 cut(s) 134
KspAI GTTAAC 1 cut(s) 216
Kzo9I GATC 2 cut(s) 181, 283
MalI GATC 2 cut(s) 183, 285
MboI GATC 2 cut(s) 181, 283
MboII GAAGA 1 cut(s) 27
MflI RGATCY 1 cut(s) 283
MluCI AATT 2 cut(s) 233, 271
MlyI GAGTC 1 cut(s) 269
MnlI CCTC 1 cut(s) 200
MroXI GAANNNNTTC 1 cut(s) 40
MseI TTAA 2 cut(s) 204, 215
MwoI GCNNNNNNNGC 1 cut(s) 183
NdeII GATC 2 cut(s) 181, 283
NlaIII CATG 1 cut(s) 134
NspI RCATGY 1 cut(s) 134
PaeI GCATGC 1 cut(s) 134
PdmI GAANNNNTTC 1 cut(s) 40
PleI GAGTC 1 cut(s) 268
PpsI GAGTC 1 cut(s) 268
PsuI RGATCY 1 cut(s) 283
RsaI GTAC 1 cut(s) 304
RsaNI GTAC 1 cut(s) 303
SaqAI TTAA 2 cut(s) 204, 215
Sau3AI GATC 2 cut(s) 181, 283
SchI GAGTC 1 cut(s) 269
SetI ASST 4 cut(s) 33, 107, 149, 192
SgeI CNNG 6 cut(s) 90, 143, 182, 190, 209, 308
SphI GCATGC 1 cut(s) 134
Sse9I AATT 2 cut(s) 233, 271
TaaI ACNGT 2 cut(s) 75, 302
TaqI TCGA 1 cut(s) 9
TasI AATT 2 cut(s) 233, 271
TatI WGTACW 1 cut(s) 302
Tru1I TTAA 2 cut(s) 204, 215
Tru9I TTAA 2 cut(s) 204, 215
TscAI CASTG 1 cut(s) 163
TspDTI ATGAA 4 cut(s) 17, 104, 155, 246
TspRI CASTG 1 cut(s) 163
XapI RAATTY 1 cut(s) 233
XceI RCATGY 1 cut(s) 134
XcmI CCANNNNNNNNNTGG 1 cut(s) 277
XmnI GAANNNNTTC 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.