MD17G1230300.v1.1

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0000369
Physical Location & Seq
Reverse (-)
27835797 .. 27836891
1095 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1230300.v1.1.491

Sequence Viewer

Length: 1095 bp
ATGGCCTTTCCTGCGAACCTGATGCTCCACATTCTCTCCAGATTGCCCGTCAAATCTCTGGTTCGATTCGCCTCGGTGCGGAAAGCATGGGATGCTCTGATCAGGGACTCCCATTTCATTTCTCAGCACCTCCGTCTCAACATTTCGAAAACCGGATGCCTAGTGGTAAAATATCGTTCACAAATTACTCGTAAGCATGTCATTTCTCTGCTGCTTTTAGATGGTTATGTGTTATCAGATTTGGAGATACCATCTGTGATGGATTCCAATCACTTGAAATTCGTGGGATCTTGCAATGGGTTACTTTGTTTAGCTCATGATACTTTTGCTAATCTTGGGTCGCCCATAATTTTGTGGAATCCTGCCATGGCGGAATTTAGGGTCCTCCCAGACAGTCTTATCGGTAGTGCCAATGTACATAATGCGCGGGTCTCCGGTGTTGCTCTTGGATTCGGGTACCACCCGCTTCTTGATGACTATAAGTTGGTGAGGATTGTCTCTTTGTCTCGCTCGAACACACCTTGCATCCGCGCGGAGGTGTATTCGCTGAGAACGGACTGTTGGCTGGAGATTGATACGTTTTACTTCGATATTTATGAACCTTCGTGCACTGCTGTGAATGGTTTCCTTTATTGGATTGCATACGGCAGGGTTGAGTCCGAACTGATCTTATCGTTTGACATGCGTAATGAGGCGTTTGGGCAGTTACAGTTGCCGGATTTAAACGTTTTAGGAAGTCCAATGTGCAAAAAACTCGCGGCGTTGAAGGAGTCTCTTTATTTGATGGCCTATACTTTCAGTGGAAGGCAAAAGGAGTTTTATGTGTGGCAAATGGTTGAGCAGAATGCTGAGGTGTTATGGAAATTGGAATGCACAATTGGACCCCTGCTCGGAGTTGAGAGGCCGCTGGGCTGCAGTTTATATGGCGAAATATATATCGAAAGTAGCAGAGGCGAGCTGGTTTTGTATGATCCAACTACTCAGGAAACTAAAAACGTTCCAACTCGTGGCCTTCGTTTTTCTTCAGAAGTCCATTTTTATGTGGAGAGCCTAGTTTCGACTAATGGACAAGGTGAAAGTCGTACAAGAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

365

Amino Acids

41.14

Weight (kDa)

6.51

Isoelectric Point (pI)

46.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 87 - 248 2.4e-16 F-box associated beta propeller domain
FBA_1 PF07734 90 - 324 6.6e-21 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis pycom17g23320
rosa_chinensis RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 456
AccB1I GGYRCC 1 cut(s) 456
AccB7I CCANNNNNTGG 1 cut(s) 1007
AccII CGCG 4 cut(s) 427, 531, 533, 758
AciI CCGC 8 cut(s) 79, 371, 427, 464, 529, 533, 758, 905
AclI AACGTT 2 cut(s) 726, 996
AclWI GGATC 2 cut(s) 295, 965
AcsI RAATTY 2 cut(s) 278, 374
AcuI CTGAAG 1 cut(s) 1008
AfaI GTAC 3 cut(s) 417, 458, 1084
AfiI CCNNNNNNNGG 4 cut(s) 78, 535, 890, 1007
AgsI TTSAA 2 cut(s) 277, 766
AjuI GAANNNNNNNTTGG 4 cut(s) 544, 576, 861, 893
AleI CACNNNNGTG 1 cut(s) 614
AluBI AGCT 2 cut(s) 314, 958
AluI AGCT 2 cut(s) 314, 958
Alw21I GWGCWC 1 cut(s) 611
Alw26I GTCTC 6 cut(s) 140, 436, 502, 510, 777, 1083
Alw44I GTGCAC 1 cut(s) 607
AlwI GGATC 2 cut(s) 295, 965
AoxI GGCC 4 cut(s) 3, 786, 902, 1009
ApaLI GTGCAC 1 cut(s) 607
ApeKI GCWGC 2 cut(s) 211, 912
ApoI RAATTY 2 cut(s) 278, 374
Asp700I GAANNNNTTC 1 cut(s) 623
Asp718I GGTACC 1 cut(s) 456
AspLEI GCGC 2 cut(s) 427, 533
AspS9I GGNCC 2 cut(s) 382, 881
AsuHPI GGTGA 2 cut(s) 499, 1085
AsuII TTCGAA 1 cut(s) 146
AvaII GGWCC 2 cut(s) 382, 881
BaeGI GKGCMC 1 cut(s) 611
BanI GGYRCC 1 cut(s) 456
BauI CACGAG 1 cut(s) 1005
Bbv12I GWGCWC 1 cut(s) 611
BbvCI CCTCAGC 1 cut(s) 849
BbvI GCAGC 2 cut(s) 198, 899
BccI CCATC 4 cut(s) 215, 253, 259, 778
BceAI ACGGC 1 cut(s) 661
BcgI CGANNNNNNTGC 4 cut(s) 4, 38, 736, 770
BclI TGATCA 1 cut(s) 99
BcoDI GTCTC 6 cut(s) 140, 436, 502, 510, 777, 1083
BfaI CTAG 2 cut(s) 161, 1052
BfmI CTRYAG 1 cut(s) 913
BisI GCNGC 4 cut(s) 212, 759, 905, 913
BlsI GCNGC 4 cut(s) 213, 760, 906, 914
Bme18I GGWCC 2 cut(s) 382, 881
BmgT120I GGNCC 2 cut(s) 382, 881
BmiI GGNNCC 3 cut(s) 383, 458, 883
BmsI GCATC 4 cut(s) 12, 82, 146, 534
BpmI CTGGAG 2 cut(s) 22, 587
Bpu10I CCTNAGC 1 cut(s) 849
Bpu14I TTCGAA 1 cut(s) 146
BsaBI GATNNNNATC 1 cut(s) 267
BsaI GGTCTC 1 cut(s) 436
BsaJI CCNNGG 2 cut(s) 72, 366
BsaWI WCCGGW 2 cut(s) 152, 434
BsaXI ACNNNNNCTCC 2 cut(s) 20, 50
Bsc4I CCNNNNNNNGG 4 cut(s) 78, 535, 890, 1007
Bse3DI GCAATG 1 cut(s) 301
Bse8I GATNNNNATC 1 cut(s) 267
BseDI CCNNGG 2 cut(s) 72, 366
BseGI GGATG 3 cut(s) 97, 161, 525
BseJI GATNNNNATC 1 cut(s) 267
BseLI CCNNNNNNNGG 4 cut(s) 78, 535, 890, 1007
BseMI GCAATG 1 cut(s) 301
BseMII CTCAG 4 cut(s) 137, 539, 840, 995
BseSI GKGCMC 1 cut(s) 611
BseXI GCAGC 2 cut(s) 198, 899
BseYI CCCAGC 1 cut(s) 907
Bsh1236I CGCG 4 cut(s) 427, 531, 533, 758
BshFI GGCC 4 cut(s) 5, 788, 904, 1011
BshNI GGYRCC 1 cut(s) 456
BsiHKAI GWGCWC 1 cut(s) 611
BsiSI CCGG 3 cut(s) 153, 435, 716
BslFI GGGAC 1 cut(s) 119
BslI CCNNNNNNNGG 4 cut(s) 78, 535, 890, 1007
BsmAI GTCTC 6 cut(s) 140, 436, 502, 510, 777, 1083
BsmBI CGTCTC 1 cut(s) 140
BsmFI GGGAC 1 cut(s) 119
BsmI GAATGC 2 cut(s) 850, 875
BsnI GGCC 4 cut(s) 5, 788, 904, 1011
Bso31I GGTCTC 1 cut(s) 436
Bsp119I TTCGAA 1 cut(s) 146
Bsp1286I GDGCHC 1 cut(s) 611
Bsp1407I TGTACA 1 cut(s) 415
Bsp143I GATC 4 cut(s) 99, 287, 666, 970
Bsp19I CCATGG 1 cut(s) 366
BspACI CCGC 8 cut(s) 79, 371, 427, 464, 529, 533, 758, 905
BspANI GGCC 4 cut(s) 5, 788, 904, 1011
BspCNI CTCAG 4 cut(s) 136, 540, 841, 994
BspFNI CGCG 4 cut(s) 427, 531, 533, 758
BspHI TCATGA 1 cut(s) 316
BspLI GGNNCC 3 cut(s) 383, 458, 883
BspMAI CTGCAG 1 cut(s) 917
BspPI GGATC 2 cut(s) 295, 965
BspT104I TTCGAA 1 cut(s) 146
BspT107I GGYRCC 1 cut(s) 456
BspTNI GGTCTC 1 cut(s) 436
BsrDI GCAATG 1 cut(s) 301
BsrGI TGTACA 1 cut(s) 415
BssECI CCNNGG 2 cut(s) 72, 366
BssMI GATC 4 cut(s) 99, 287, 666, 970
BssSI CACGAG 1 cut(s) 1005
BssT1I CCWWGG 1 cut(s) 366
Bst2BI CACGAG 1 cut(s) 1005
Bst4CI ACNGT 3 cut(s) 395, 560, 711
BstAPI GCANNNNNTGC 1 cut(s) 92
BstAUI TGTACA 1 cut(s) 415
BstBI TTCGAA 1 cut(s) 146
BstC8I GCNNGC 1 cut(s) 956
BstDEI CTNAG 4 cut(s) 123, 548, 849, 981
BstDSI CCRYGG 1 cut(s) 366
BstF5I GGATG 3 cut(s) 97, 161, 525
BstFNI CGCG 4 cut(s) 427, 531, 533, 758
BstHHI GCGC 2 cut(s) 427, 533
BstKTI GATC 4 cut(s) 102, 290, 669, 973
BstMAI GTCTC 6 cut(s) 140, 436, 502, 510, 777, 1083
BstMBI GATC 4 cut(s) 99, 287, 666, 970
BstMWI GCNNNNNNNGC 2 cut(s) 11, 92
BstNSI RCATGY 2 cut(s) 200, 685
BstSFI CTRYAG 1 cut(s) 913
BstSLI GKGCMC 1 cut(s) 611
BstUI CGCG 4 cut(s) 427, 531, 533, 758
BstV1I GCAGC 2 cut(s) 198, 899
BstX2I RGATCY 1 cut(s) 287
BstYI RGATCY 1 cut(s) 287
BsuRI GGCC 4 cut(s) 5, 788, 904, 1011
BtgI CCRYGG 1 cut(s) 366
BtsCI GGATG 3 cut(s) 97, 161, 525
BtsI GCAGTG 1 cut(s) 609
BtsIMutI CAGTG 2 cut(s) 609, 805
Cac8I GCNNGC 1 cut(s) 956
CciI TCATGA 1 cut(s) 316
CfoI GCGC 2 cut(s) 427, 533
Cfr13I GGNCC 2 cut(s) 382, 881
Csp6I GTAC 3 cut(s) 416, 457, 1083
CviAII CATG 5 cut(s) 87, 197, 317, 367, 682
CviJI RGCY 9 cut(s) 5, 314, 565, 788, 904, 912, 958, 1011, 1050
CviKI_1 RGCY 9 cut(s) 5, 314, 565, 788, 904, 912, 958, 1011, 1050
CviQI GTAC 3 cut(s) 416, 457, 1083
DdeI CTNAG 4 cut(s) 123, 548, 849, 981
DpnI GATC 4 cut(s) 101, 289, 668, 972
DpnII GATC 4 cut(s) 99, 287, 666, 970
DraI TTTAAA 1 cut(s) 723
EciI GGCGGA 1 cut(s) 386
Eco130I CCWWGG 1 cut(s) 366
Eco31I GGTCTC 1 cut(s) 436
Eco47I GGWCC 2 cut(s) 382, 881
Eco57I CTGAAG 1 cut(s) 1008
EcoO109I RGGNCCY 1 cut(s) 382
EcoT14I CCWWGG 1 cut(s) 366
ErhI CCWWGG 1 cut(s) 366
Esp3I CGTCTC 1 cut(s) 140
FaeI CATG 5 cut(s) 90, 200, 320, 370, 685
FaqI GGGAC 1 cut(s) 119
FatI CATG 5 cut(s) 86, 196, 316, 366, 681
FauI CCCGC 2 cut(s) 420, 471
FbaI TGATCA 1 cut(s) 99
Fnu4HI GCNGC 4 cut(s) 212, 759, 905, 913
FokI GGATG 3 cut(s) 104, 168, 512
Fsp4HI GCNGC 4 cut(s) 212, 759, 905, 913
FspBI CTAG 2 cut(s) 161, 1052
GlaI GCGC 2 cut(s) 426, 532
GluI GCNGC 4 cut(s) 212, 759, 905, 913
GsaI CCCAGC 1 cut(s) 911
GsuI CTGGAG 2 cut(s) 22, 587
HaeIII GGCC 4 cut(s) 5, 788, 904, 1011
HapII CCGG 3 cut(s) 153, 435, 716
HhaI GCGC 2 cut(s) 427, 533
Hin1II CATG 5 cut(s) 90, 200, 320, 370, 685
Hin6I GCGC 2 cut(s) 425, 531
HinP1I GCGC 2 cut(s) 425, 531
HinfI GANTC 7 cut(s) 66, 107, 263, 358, 450, 656, 770
HpaII CCGG 3 cut(s) 153, 435, 716
HphI GGTGA 2 cut(s) 499, 1085
Hpy166II GTNNAC 2 cut(s) 179, 609
Hpy188I TCNGA 5 cut(s) 99, 238, 661, 893, 1027
Hpy188III TCNNGA 4 cut(s) 39, 317, 470, 983
Hpy8I GTNNAC 2 cut(s) 179, 609
HpyAV CCTTC 4 cut(s) 612, 760, 798, 1022
HpyCH4III ACNGT 3 cut(s) 395, 560, 711
HpyCH4IV ACGT 3 cut(s) 578, 726, 996
HpyCH4V TGCA 7 cut(s) 294, 525, 609, 641, 747, 873, 915
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 92
HpyF3I CTNAG 4 cut(s) 123, 548, 849, 981
HpySE526I ACGT 3 cut(s) 578, 726, 996
Hsp92II CATG 5 cut(s) 90, 200, 320, 370, 685
HspAI GCGC 2 cut(s) 425, 531
KpnI GGTACC 1 cut(s) 460
Ksp22I TGATCA 1 cut(s) 99
Kzo9I GATC 4 cut(s) 99, 287, 666, 970
LmnI GCTCC 1 cut(s) 30
Lsp1109I GCAGC 2 cut(s) 198, 899
LweI GCATC 4 cut(s) 12, 82, 146, 534
MaeI CTAG 2 cut(s) 161, 1052
MaeII ACGT 3 cut(s) 578, 726, 996
MaeIII GTNAC 2 cut(s) 300, 705
MalI GATC 4 cut(s) 101, 289, 668, 972
MboI GATC 4 cut(s) 99, 287, 666, 970
MboII GAAGA 1 cut(s) 1014
MfeI CAATTG 1 cut(s) 876
MflI RGATCY 1 cut(s) 287
MhlI GDGCHC 1 cut(s) 611
MluCI AATT 6 cut(s) 183, 278, 348, 374, 863, 876
MlyI GAGTC 3 cut(s) 101, 665, 779
MmeI TCCRAC 2 cut(s) 998, 1025
MnlI CCTC 9 cut(s) 82, 140, 395, 483, 529, 685, 844, 894, 944
MroXI GAANNNNTTC 1 cut(s) 623
MseI TTAA 1 cut(s) 722
MslI CAYNNNNRTG 2 cut(s) 614, 1038
MspA1I CMGCKG 1 cut(s) 907
MspI CCGG 3 cut(s) 153, 435, 716
MunI CAATTG 1 cut(s) 876
Mva1269I GAATGC 2 cut(s) 850, 875
MvnI CGCG 4 cut(s) 427, 531, 533, 758
MwoI GCNNNNNNNGC 2 cut(s) 11, 92
NcoI CCATGG 1 cut(s) 366
NdeII GATC 4 cut(s) 99, 287, 666, 970
NlaIII CATG 5 cut(s) 90, 200, 320, 370, 685
NlaIV GGNNCC 3 cut(s) 383, 458, 883
NspI RCATGY 2 cut(s) 200, 685
NspV TTCGAA 1 cut(s) 146
OliI CACNNNNGTG 1 cut(s) 614
PagI TCATGA 1 cut(s) 316
PcsI WCGNNNNNNNCGW 1 cut(s) 1012
PctI GAATGC 2 cut(s) 850, 875
PdmI GAANNNNTTC 1 cut(s) 623
PfeI GAWTC 4 cut(s) 66, 263, 358, 450
PflMI CCANNNNNTGG 1 cut(s) 1007
PkrI GCNGC 4 cut(s) 213, 760, 906, 914
PleI GAGTC 3 cut(s) 101, 664, 778
PpsI GAGTC 3 cut(s) 101, 664, 778
PpuMI RGGWCCY 1 cut(s) 382
Psp1406I AACGTT 2 cut(s) 726, 996
Psp5II RGGWCCY 1 cut(s) 382
PspFI CCCAGC 1 cut(s) 907
PspN4I GGNNCC 3 cut(s) 383, 458, 883
PspPI GGNCC 2 cut(s) 382, 881
PspPPI RGGWCCY 1 cut(s) 382
PstI CTGCAG 1 cut(s) 917
PsuI RGATCY 1 cut(s) 287
RsaI GTAC 3 cut(s) 417, 458, 1084
RsaNI GTAC 3 cut(s) 416, 457, 1083
RseI CAYNNNNRTG 2 cut(s) 614, 1038
SaqAI TTAA 1 cut(s) 722
SatI GCNGC 4 cut(s) 212, 759, 905, 913
Sau3AI GATC 4 cut(s) 99, 287, 666, 970
Sau96I GGNCC 2 cut(s) 382, 881
SchI GAGTC 3 cut(s) 101, 665, 779
SduI GDGCHC 1 cut(s) 611
SfaNI GCATC 4 cut(s) 12, 82, 146, 534
SfcI CTRYAG 1 cut(s) 913
SfuI TTCGAA 1 cut(s) 146
SinI GGWCC 2 cut(s) 382, 881
SmiMI CAYNNNNRTG 2 cut(s) 614, 1038
Sse9I AATT 6 cut(s) 183, 278, 348, 374, 863, 876
SsiI CCGC 8 cut(s) 79, 371, 427, 464, 529, 533, 758, 905
SspMI CTAG 2 cut(s) 161, 1052
StyI CCWWGG 1 cut(s) 366
TaaI ACNGT 3 cut(s) 395, 560, 711
TaiI ACGT 3 cut(s) 581, 729, 999
TaqI TCGA 6 cut(s) 64, 146, 512, 588, 939, 1058
TasI AATT 6 cut(s) 183, 278, 348, 374, 863, 876
TatI WGTACW 1 cut(s) 415
TauI GCSGC 2 cut(s) 761, 907
TfiI GAWTC 4 cut(s) 66, 263, 358, 450
Tru1I TTAA 1 cut(s) 722
Tru9I TTAA 1 cut(s) 722
TscAI CASTG 2 cut(s) 616, 805
TseI GCWGC 2 cut(s) 211, 912
TspDTI ATGAA 2 cut(s) 106, 612
TspGWI ACGGA 2 cut(s) 122, 569
TspRI CASTG 2 cut(s) 616, 805
Van91I CCANNNNNTGG 1 cut(s) 1007
VneI GTGCAC 1 cut(s) 607
VpaK11BI GGWCC 2 cut(s) 382, 881
XapI RAATTY 2 cut(s) 278, 374
XceI RCATGY 2 cut(s) 200, 685
XmnI GAANNNNTTC 1 cut(s) 623
XspI CTAG 2 cut(s) 161, 1052
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.