Rw6G026030

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000369
Physical Location & Seq
Reverse (-)
49434130 .. 49435281
1152 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G026030.1

Sequence Viewer

Length: 1152 bp
ATGGAAGCTGGAAGCTCTAATTTTCTGGCTGTAGCTGATGAAAGTGTTCTAGTAGAAATTCTCTCAAAACTGCCTCTCAAGTCTATATATAGGTTTAGGTGTGTATCGAAAGAGTGGAATGCTCTCACTAGAACTTCATATTTCCTGGACAGACATCGTCTTCACAGCTCTCGCCGCCTCCTCCTCATCTCCTCCTCTTCTCTTGCTGATCAGAAACCAGCTGGAATCTCATTACTTGCCGACGAAGAAACGGCACTTTCAAGTTTGAATATACCTTTCCTCCCCAACGATGCAAGATGGGATTTAGATTTTGTGGGATCTAGTAATGGGTTAGTTTGCTGTAATAAGTTTCTTGATGGTAATGTATTAGCCATAATAGTATGGAACCCAGCAACAACACAATTTAGTTATCATCGTCATTCCTTTGAGGAGGAACTTGAGAATGCTACTTCCTATCCTCTTATAGGTTTTGATTTCATGCATAGCACCAATGTGTACAAAATGGTGGAAGTTTTCCCATATGGTAGTGATGATCCGGATGATCCCCTAAAACTTGGTTTTGGAGCCGCAGTCTTCACCCAGAATACACCTTCTTGGAGAGTAGTTGAGTCGAGAATTGGACTTGCATCATGTAAAATGTGTTATACAAATCAGTCTACTACCTTGAATGGAGTGCTGTATTGGTTGGTAGAGCATACATCCAATGGATTTGCTGTCGTTTCGTTTAGTTTACATGATGAGGCCTTCAAGGATATATGTAAATCACTACCAGAAGAAATATGCTATGTCAGTGACAATAGCATCCTCCCAACATTAGTTTCATGGAGAAATTCACTTGCAGTTGTAGGTGTGGATCAGGGTGACAACTTAGTGCTTTGGGTGGACAGTACTGCTGATCAGGAATCTGATTGGATTGCACAAATGAGAATCAAATGGCCGTCGCTATGTGAAGGAAGTTGGTTGTTATTGAGAGGAGTTTGGAAGGATCAATTTGTTTTCAGCAAAAAAGGATATGAAGTAGGTGCACATAATGAACCGGACAACCTGTTTTTGTATAACCCTATAACCGAGGCATTGAGAAAGGTACATGGAGAAAGAAACAATTTTTTTAGATTTGCAGTAAGTTATGCAGAGAGCAATGTCAAGCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

383

Amino Acids

43.2

Weight (kDa)

5.18

Isoelectric Point (pI)

31.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 16 - 49 4e-07 F-box domain
FBA_3 PF08268 98 - 365 1.8e-14 F-box associated beta propeller domain
FBA_1 PF07734 99 - 381 4.7e-17 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis pycom17g23320
rosa_chinensis RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 656
AccIII TCCGGA 1 cut(s) 535
AciI CCGC 2 cut(s) 175, 567
AclWI GGATC 5 cut(s) 325, 527, 536, 861, 993
AcoI YGGCCR 1 cut(s) 935
AcsI RAATTY 2 cut(s) 57, 829
AfaI GTAC 3 cut(s) 497, 889, 1086
AfiI CCNNNNNNNGG 1 cut(s) 464
AgsI TTSAA 4 cut(s) 261, 268, 667, 748
AjnI CCWGG 1 cut(s) 144
AjuI GAANNNNNNNTTGG 2 cut(s) 802, 834
AleI CACNNNNGTG 1 cut(s) 491
AluBI AGCT 5 cut(s) 8, 15, 35, 168, 221
AluI AGCT 5 cut(s) 8, 15, 35, 168, 221
Alw21I GWGCWC 1 cut(s) 1027
Alw44I GTGCAC 1 cut(s) 1023
AlwI GGATC 5 cut(s) 325, 527, 536, 861, 993
Aor13HI TCCGGA 1 cut(s) 535
AoxI GGCC 2 cut(s) 741, 935
ApaLI GTGCAC 1 cut(s) 1023
ApoI RAATTY 2 cut(s) 57, 829
Asp700I GAANNNNTTC 1 cut(s) 45
AsuHPI GGTGA 2 cut(s) 568, 872
BaeGI GKGCMC 1 cut(s) 1027
BbsI GAAGAC 2 cut(s) 152, 565
Bbv12I GWGCWC 1 cut(s) 1027
BccI CCATC 2 cut(s) 291, 350
BceAI ACGGC 2 cut(s) 267, 922
BciT130I CCWGG 1 cut(s) 146
BclI TGATCA 2 cut(s) 208, 895
BfaI CTAG 3 cut(s) 50, 129, 321
BfmI CTRYAG 1 cut(s) 30
BisI GCNGC 2 cut(s) 175, 567
BlsI GCNGC 2 cut(s) 176, 568
BmcAI AGTACT 1 cut(s) 889
Bme1390I CCNGG 1 cut(s) 146
BmiI GGNNCC 2 cut(s) 386, 565
BmrFI CCNGG 1 cut(s) 146
BmsI GCATC 3 cut(s) 280, 635, 810
BpiI GAAGAC 2 cut(s) 152, 565
BpuEI CTTGAG 2 cut(s) 62, 458
BsaJI CCNNGG 1 cut(s) 1068
BsaWI WCCGGW 2 cut(s) 535, 1036
BsaXI ACNNNNNCTCC 4 cut(s) 264, 294, 555, 585
Bsc4I CCNNNNNNNGG 1 cut(s) 464
Bse3DI GCAATG 1 cut(s) 1144
BseAI TCCGGA 1 cut(s) 535
BseBI CCWGG 1 cut(s) 146
BseDI CCNNGG 1 cut(s) 1068
BseGI GGATG 3 cut(s) 544, 698, 801
BseLI CCNNNNNNNGG 1 cut(s) 464
BseMI GCAATG 1 cut(s) 1144
BseRI GAGGAG 6 cut(s) 170, 173, 181, 184, 443, 987
BseSI GKGCMC 1 cut(s) 1027
BseYI CCCAGC 1 cut(s) 388
BshFI GGCC 2 cut(s) 743, 937
BsiHKAI GWGCWC 1 cut(s) 1027
BsiSI CCGG 2 cut(s) 536, 1037
BslI CCNNNNNNNGG 1 cut(s) 464
BsmI GAATGC 2 cut(s) 124, 448
BsnI GGCC 2 cut(s) 743, 937
Bsp1286I GDGCHC 1 cut(s) 1027
Bsp13I TCCGGA 1 cut(s) 535
Bsp1407I TGTACA 1 cut(s) 495
Bsp143I GATC 7 cut(s) 208, 317, 532, 541, 853, 895, 985
BspACI CCGC 2 cut(s) 175, 567
BspANI GGCC 2 cut(s) 743, 937
BspEI TCCGGA 1 cut(s) 535
BspLI GGNNCC 2 cut(s) 386, 565
BspPI GGATC 5 cut(s) 325, 527, 536, 861, 993
BsrDI GCAATG 1 cut(s) 1144
BsrGI TGTACA 1 cut(s) 495
BssECI CCNNGG 1 cut(s) 1068
BssMI GATC 7 cut(s) 208, 317, 532, 541, 853, 895, 985
Bst2UI CCWGG 1 cut(s) 146
Bst4CI ACNGT 1 cut(s) 887
Bst6I CTCTTC 1 cut(s) 202
BstAUI TGTACA 1 cut(s) 495
BstDEI CTNAG 1 cut(s) 868
BstENI CCTNNNNNAGG 1 cut(s) 462
BstF5I GGATG 3 cut(s) 544, 698, 801
BstKTI GATC 7 cut(s) 211, 320, 535, 544, 856, 898, 988
BstMBI GATC 7 cut(s) 208, 317, 532, 541, 853, 895, 985
BstMWI GCNNNNNNNGC 1 cut(s) 174
BstNI CCWGG 1 cut(s) 146
BstSCI CCNGG 1 cut(s) 144
BstSFI CTRYAG 1 cut(s) 30
BstSLI GKGCMC 1 cut(s) 1027
BstV2I GAAGAC 2 cut(s) 152, 565
BstX2I RGATCY 1 cut(s) 317
BstYI RGATCY 1 cut(s) 317
BsuRI GGCC 2 cut(s) 743, 937
BtsCI GGATG 3 cut(s) 544, 698, 801
BtsIMutI CAGTG 1 cut(s) 796
Csp6I GTAC 3 cut(s) 496, 888, 1085
CviAII CATG 5 cut(s) 478, 630, 734, 822, 1088
CviQI GTAC 3 cut(s) 496, 888, 1085
DdeI CTNAG 1 cut(s) 868
DpnI GATC 7 cut(s) 210, 319, 534, 543, 855, 897, 987
DpnII GATC 7 cut(s) 208, 317, 532, 541, 853, 895, 985
EaeI YGGCCR 1 cut(s) 935
Eam1104I CTCTTC 1 cut(s) 202
EarI CTCTTC 1 cut(s) 202
Eco147I AGGCCT 1 cut(s) 743
EcoNI CCTNNNNNAGG 1 cut(s) 462
EcoRII CCWGG 1 cut(s) 144
EcoT22I ATGCAT 1 cut(s) 483
FaeI CATG 5 cut(s) 481, 633, 737, 825, 1091
FatI CATG 5 cut(s) 477, 629, 733, 821, 1087
FauNDI CATATG 1 cut(s) 520
FbaI TGATCA 2 cut(s) 208, 895
FblI GTMKAC 1 cut(s) 656
Fnu4HI GCNGC 2 cut(s) 175, 567
FokI GGATG 3 cut(s) 551, 685, 788
Fsp4HI GCNGC 2 cut(s) 175, 567
FspBI CTAG 3 cut(s) 50, 129, 321
GluI GCNGC 2 cut(s) 175, 567
GsaI CCCAGC 1 cut(s) 392
HaeIII GGCC 2 cut(s) 743, 937
HapII CCGG 2 cut(s) 536, 1037
Hin1II CATG 5 cut(s) 481, 633, 737, 825, 1091
HinfI GANTC 4 cut(s) 225, 608, 902, 927
HpaII CCGG 2 cut(s) 536, 1037
HphI GGTGA 2 cut(s) 568, 872
Hpy166II GTNNAC 5 cut(s) 496, 657, 731, 883, 1025
Hpy188I TCNGA 2 cut(s) 213, 907
Hpy188III TCNNGA 4 cut(s) 353, 536, 612, 899
Hpy8I GTNNAC 5 cut(s) 496, 657, 731, 883, 1025
Hpy99I CGWCG 2 cut(s) 245, 943
HpyAV CCTTC 4 cut(s) 600, 754, 944, 976
HpyCH4III ACNGT 1 cut(s) 887
HpyCH4V TGCA 8 cut(s) 293, 481, 626, 839, 917, 1025, 1118, 1130
HpyF10VI GCNNNNNNNGC 1 cut(s) 174
HpyF3I CTNAG 1 cut(s) 868
Hsp92II CATG 5 cut(s) 481, 633, 737, 825, 1091
Kpn2I TCCGGA 1 cut(s) 535
Ksp22I TGATCA 2 cut(s) 208, 895
Kzo9I GATC 7 cut(s) 208, 317, 532, 541, 853, 895, 985
LmnI GCTCC 1 cut(s) 563
LweI GCATC 3 cut(s) 280, 635, 810
MaeI CTAG 3 cut(s) 50, 129, 321
MaeIII GTNAC 2 cut(s) 791, 860
MalI GATC 7 cut(s) 210, 319, 534, 543, 855, 897, 987
MboI GATC 7 cut(s) 208, 317, 532, 541, 853, 895, 985
MboII GAAGA 5 cut(s) 152, 189, 257, 565, 785
MflI RGATCY 1 cut(s) 317
MhlI GDGCHC 1 cut(s) 1027
MluCI AATT 7 cut(s) 19, 57, 401, 615, 829, 989, 1102
MlyI GAGTC 1 cut(s) 617
Mph1103I ATGCAT 1 cut(s) 483
MroI TCCGGA 1 cut(s) 535
MroXI GAANNNNTTC 1 cut(s) 45
MslI CAYNNNNRTG 1 cut(s) 491
MspA1I CMGCKG 1 cut(s) 221
MspI CCGG 2 cut(s) 536, 1037
MspR9I CCNGG 1 cut(s) 146
Mva1269I GAATGC 2 cut(s) 124, 448
MvaI CCWGG 1 cut(s) 146
MwoI GCNNNNNNNGC 1 cut(s) 174
NdeI CATATG 1 cut(s) 520
NdeII GATC 7 cut(s) 208, 317, 532, 541, 853, 895, 985
NlaIII CATG 5 cut(s) 481, 633, 737, 825, 1091
NlaIV GGNNCC 2 cut(s) 386, 565
NmuCI GTSAC 2 cut(s) 791, 860
NsiI ATGCAT 1 cut(s) 483
OliI CACNNNNGTG 1 cut(s) 491
PceI AGGCCT 1 cut(s) 743
PctI GAATGC 2 cut(s) 124, 448
PdmI GAANNNNTTC 1 cut(s) 45
PfeI GAWTC 3 cut(s) 225, 902, 927
PflFI GACNNNGTC 1 cut(s) 156
PfoI TCCNGGA 1 cut(s) 144
PkrI GCNGC 2 cut(s) 176, 568
PleI GAGTC 1 cut(s) 616
PpsI GAGTC 1 cut(s) 616
Psp6I CCWGG 1 cut(s) 144
PspFI CCCAGC 1 cut(s) 388
PspGI CCWGG 1 cut(s) 144
PspN4I GGNNCC 2 cut(s) 386, 565
PsuI RGATCY 1 cut(s) 317
PsyI GACNNNGTC 1 cut(s) 156
PvuII CAGCTG 1 cut(s) 221
RsaI GTAC 3 cut(s) 497, 889, 1086
RsaNI GTAC 3 cut(s) 496, 888, 1085
RseI CAYNNNNRTG 1 cut(s) 491
SatI GCNGC 2 cut(s) 175, 567
Sau3AI GATC 7 cut(s) 208, 317, 532, 541, 853, 895, 985
ScaI AGTACT 1 cut(s) 889
SchI GAGTC 1 cut(s) 617
ScrFI CCNGG 1 cut(s) 146
SduI GDGCHC 1 cut(s) 1027
SfaNI GCATC 3 cut(s) 280, 635, 810
SfcI CTRYAG 1 cut(s) 30
SmiMI CAYNNNNRTG 1 cut(s) 491
SmlI CTYRAG 2 cut(s) 77, 437
SmoI CTYRAG 2 cut(s) 77, 437
Sse9I AATT 7 cut(s) 19, 57, 401, 615, 829, 989, 1102
SseBI AGGCCT 1 cut(s) 743
SsiI CCGC 2 cut(s) 175, 567
SspMI CTAG 3 cut(s) 50, 129, 321
StuI AGGCCT 1 cut(s) 743
StyD4I CCNGG 1 cut(s) 144
TaaI ACNGT 1 cut(s) 887
TaqI TCGA 2 cut(s) 107, 611
TasI AATT 7 cut(s) 19, 57, 401, 615, 829, 989, 1102
TatI WGTACW 2 cut(s) 495, 887
TauI GCSGC 2 cut(s) 177, 569
TfiI GAWTC 3 cut(s) 225, 902, 927
TscAI CASTG 1 cut(s) 796
TseFI GTSAC 2 cut(s) 791, 860
Tsp45I GTSAC 2 cut(s) 791, 860
TspDTI ATGAA 6 cut(s) 54, 126, 466, 810, 1029, 1047
TspRI CASTG 1 cut(s) 796
Tth111I GACNNNGTC 1 cut(s) 156
VneI GTGCAC 1 cut(s) 1023
XagI CCTNNNNNAGG 1 cut(s) 462
XapI RAATTY 2 cut(s) 57, 829
XmiI GTMKAC 1 cut(s) 656
XmnI GAANNNNTTC 1 cut(s) 45
XspI CTAG 3 cut(s) 50, 129, 321
ZrmI AGTACT 1 cut(s) 889
Zsp2I ATGCAT 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.