FvH4_2g14150

PHD and RING finger domain-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
12430059 .. 12431512
1454 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g14150.t1

Sequence Viewer

Length: 1122 bp
ATGAAAAAGGACGAGAAAATCCGTTGCCAACTAGAATTTGGATTTGTTCAGAATGAAGATCTCGTAAGAGAAATCCTCTTAAGATCCAACAAAGAAGTGATAGCACCATCTTCTATGGCTGATAATCAAGATCTTGTAAGAGAAATCCTCTCAAGATTACCCGTCAAGTCTTTAGTTAGTTGTGAAGGTAGACATCATCATCACAAGTTCTCATTGCTTGACAGAAAAGTCGACAAACTTTCGAGAGTAGAGTCACCTGCATTCATCCTGGATCAATCGTTTGAGAAAATATATATTGCCGGATCTGATAGTGGTTTGGTCTGCCTTCATCTTCTTGGAGATGCTGGAACCCAATTAACGGAGCAAATCGTCGTATGGAACCCAGTAACAAAACAATATAAGAAACTACCTAAGCCTCACTTGTCTTTGGAGGGGGATAAGATGTTGAAGATGTTCAAGGCCGCACCACTTGTAGGTTTTGGATTCATTCAAGACCATGGCATGGATATCGATTACAAAGTGGTGAGGATTTCAAAATGCAATGATGGAAGACTTGCAACCCAAGTCTTCACCCGAAGTGCAAAATCATGGAGAGTACTTAAAGACTACGATCTAAAATGTTTTGGGGTTATTAAAGCGTCTTGCATTACTTTGAATGGAGTGATGTATTTCTTGTCATGGACCTGTTCGTGGGTCTACGAGGGATGGAGAGTTTTCTCATTCAATCTGCAGCATGAGGTGATTGATAGCATATCATTACCGTTTCCGTCTGATATTCATGTTAGTAGAATAAGCGGATCACTCTTTGCATGGAACAATTTGGTTGCTTGTTCGTTATGGGTCGACAGACATAATCCCCAGTATGATGTTTGGGTGTTGGCACCAGAATCTAGAGATGATCATACACAAATGCCAACTAGCTGGAATTGGACGTTACAATTTACTGTCAAAACTCCCGATGGATGGTACTGTGGACGTCCCTATGGAGTTTGGGATAATCAACTTATTTTTATCAAAGGCTGTACTGATAGACGGCGTCACACAGGTTCTGAACGTCATCTATGTTCGTATGACCTCGAAAATCAGAGAGAGATGATGCTTATCGGACCAGAAGGTGGTTAA

Protein Analysis

374

Amino Acids

42.96

Weight (kDa)

7.96

Isoelectric Point (pI)

43.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 69 - 295 1.1e-14 F-box associated beta propeller domain
FBA_1 PF07734 120 - 317 3.3e-13 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis pycom17g23320
rosa_chinensis RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 265
AasI GACNNNNNNGTC 1 cut(s) 227
AatII GACGTC 1 cut(s) 979
Acc36I ACCTGC 1 cut(s) 265
AccB1I GGYRCC 1 cut(s) 880
AccB7I CCANNNNNTGG 2 cut(s) 502, 1115
AccI GTMKAC 4 cut(s) 190, 231, 696, 843
AciI CCGC 2 cut(s) 462, 795
AclWI GGATC 4 cut(s) 78, 279, 310, 805
AcsI RAATTY 1 cut(s) 35
AcyI GRCGYC 2 cut(s) 976, 1036
AfaI GTAC 3 cut(s) 597, 968, 1024
AfiI CCNNNNNNNGG 6 cut(s) 358, 473, 502, 690, 963, 1115
AflII CTTAAG 1 cut(s) 79
AgsI TTSAA 6 cut(s) 448, 457, 491, 534, 655, 724
AjnI CCWGG 1 cut(s) 267
AluBI AGCT 1 cut(s) 921
AluI AGCT 1 cut(s) 921
AlwI GGATC 4 cut(s) 78, 279, 310, 805
AlwNI CAGNNNCTG 1 cut(s) 1049
AoxI GGCC 1 cut(s) 459
ApeKI GCWGC 1 cut(s) 730
ApoI RAATTY 1 cut(s) 35
Asp700I GAANNNNTTC 1 cut(s) 452
AspS9I GGNCC 2 cut(s) 681, 1106
AsuHPI GGTGA 4 cut(s) 246, 535, 562, 751
AvaII GGWCC 2 cut(s) 681, 1106
BanI GGYRCC 1 cut(s) 880
BbsI GAAGAC 2 cut(s) 556, 559
BbvI GCAGC 1 cut(s) 742
BccI CCATC 5 cut(s) 115, 539, 699, 953, 957
BceAI ACGGC 1 cut(s) 1049
BcgI CGANNNNNNTGC 2 cut(s) 490, 524
BciT130I CCWGG 1 cut(s) 269
BclI TGATCA 1 cut(s) 898
BfaI CTAG 3 cut(s) 32, 891, 918
BfmI CTRYAG 1 cut(s) 728
BfrI CTTAAG 1 cut(s) 79
BfuAI ACCTGC 1 cut(s) 265
BglII AGATCT 2 cut(s) 58, 130
BisI GCNGC 2 cut(s) 462, 731
BlsI GCNGC 2 cut(s) 463, 732
BmcAI AGTACT 1 cut(s) 597
Bme1390I CCNGG 1 cut(s) 269
Bme18I GGWCC 2 cut(s) 681, 1106
BmgT120I GGNCC 2 cut(s) 681, 1106
BmiI GGNNCC 3 cut(s) 349, 380, 882
BmrFI CCNGG 1 cut(s) 269
BmrI ACTGGG 2 cut(s) 377, 853
BmsI GCATC 2 cut(s) 331, 1086
BmuI ACTGGG 2 cut(s) 377, 853
BpiI GAAGAC 2 cut(s) 556, 559
BplI GAGNNNNNCTC 4 cut(s) 60, 92, 132, 164
Bpu10I CCTNAGC 1 cut(s) 411
BpuEI CTTGAG 1 cut(s) 136
Bsa29I ATCGAT 1 cut(s) 510
BsaBI GATNNNNATC 1 cut(s) 1100
BsaHI GRCGYC 2 cut(s) 976, 1036
BsaJI CCNNGG 1 cut(s) 496
Bsc4I CCNNNNNNNGG 6 cut(s) 358, 473, 502, 690, 963, 1115
Bse1I ACTGG 2 cut(s) 383, 859
Bse3DI GCAATG 2 cut(s) 212, 547
Bse8I GATNNNNATC 1 cut(s) 1100
BseBI CCWGG 1 cut(s) 269
BseCI ATCGAT 1 cut(s) 510
BseDI CCNNGG 1 cut(s) 496
BseGI GGATG 3 cut(s) 264, 710, 968
BseJI GATNNNNATC 1 cut(s) 1100
BseLI CCNNNNNNNGG 6 cut(s) 358, 473, 502, 690, 963, 1115
BseMI GCAATG 2 cut(s) 212, 547
BseNI ACTGG 2 cut(s) 383, 859
BseXI GCAGC 1 cut(s) 742
BshFI GGCC 1 cut(s) 461
BshNI GGYRCC 1 cut(s) 880
BshVI ATCGAT 1 cut(s) 510
BsiSI CCGG 1 cut(s) 300
BslFI GGGAC 1 cut(s) 963
BslI CCNNNNNNNGG 6 cut(s) 358, 473, 502, 690, 963, 1115
BsmFI GGGAC 1 cut(s) 963
BsmI GAATGC 1 cut(s) 260
BsnI GGCC 1 cut(s) 461
Bsp143I GATC 8 cut(s) 58, 83, 130, 271, 302, 610, 797, 898
Bsp19I CCATGG 1 cut(s) 496
BspACI CCGC 2 cut(s) 462, 795
BspANI GGCC 1 cut(s) 461
BspDI ATCGAT 1 cut(s) 510
BspLI GGNNCC 3 cut(s) 349, 380, 882
BspMAI CTGCAG 1 cut(s) 732
BspMI ACCTGC 1 cut(s) 265
BspPI GGATC 4 cut(s) 78, 279, 310, 805
BspT107I GGYRCC 1 cut(s) 880
BspTI CTTAAG 1 cut(s) 79
BsrDI GCAATG 2 cut(s) 212, 547
BsrI ACTGG 2 cut(s) 383, 859
BssECI CCNNGG 1 cut(s) 496
BssMI GATC 8 cut(s) 58, 83, 130, 271, 302, 610, 797, 898
BssNI GRCGYC 2 cut(s) 976, 1036
BssT1I CCWWGG 1 cut(s) 496
Bst2UI CCWGG 1 cut(s) 269
Bst4CI ACNGT 3 cut(s) 762, 946, 971
BstACI GRCGYC 2 cut(s) 976, 1036
BstAFI CTTAAG 1 cut(s) 79
BstDEI CTNAG 1 cut(s) 411
BstDSI CCRYGG 1 cut(s) 496
BstF5I GGATG 3 cut(s) 264, 710, 968
BstKTI GATC 8 cut(s) 61, 86, 133, 274, 305, 613, 800, 901
BstMBI GATC 8 cut(s) 58, 83, 130, 271, 302, 610, 797, 898
BstNI CCWGG 1 cut(s) 269
BstSCI CCNGG 1 cut(s) 267
BstSFI CTRYAG 1 cut(s) 728
BstV1I GCAGC 1 cut(s) 742
BstV2I GAAGAC 2 cut(s) 556, 559
BstX2I RGATCY 4 cut(s) 58, 83, 130, 302
BstXI CCANNNNNNTGG 1 cut(s) 921
BstYI RGATCY 4 cut(s) 58, 83, 130, 302
Bsu15I ATCGAT 1 cut(s) 510
BsuRI GGCC 1 cut(s) 461
BsuTUI ATCGAT 1 cut(s) 510
BtgI CCRYGG 1 cut(s) 496
BtsCI GGATG 3 cut(s) 264, 710, 968
BveI ACCTGC 1 cut(s) 265
CaiI CAGNNNCTG 1 cut(s) 1049
Cfr13I GGNCC 2 cut(s) 681, 1106
ClaI ATCGAT 1 cut(s) 510
CseI GACGC 2 cut(s) 627, 1025
Csp6I GTAC 3 cut(s) 596, 967, 1023
CviAII CATG 7 cut(s) 497, 502, 588, 678, 734, 779, 810
CviJI RGCY 5 cut(s) 119, 415, 461, 921, 1020
CviKI_1 RGCY 5 cut(s) 119, 415, 461, 921, 1020
CviQI GTAC 3 cut(s) 596, 967, 1023
DdeI CTNAG 1 cut(s) 411
DpnI GATC 8 cut(s) 60, 85, 132, 273, 304, 612, 799, 900
DpnII GATC 8 cut(s) 58, 83, 130, 271, 302, 610, 797, 898
DrdI GACNNNNNNGTC 1 cut(s) 227
DseDI GACNNNNNNGTC 1 cut(s) 227
Eco130I CCWWGG 1 cut(s) 496
Eco32I GATATC 1 cut(s) 508
Eco47I GGWCC 2 cut(s) 681, 1106
EcoRII CCWGG 1 cut(s) 267
EcoRV GATATC 1 cut(s) 508
EcoT14I CCWWGG 1 cut(s) 496
ErhI CCWWGG 1 cut(s) 496
FaeI CATG 7 cut(s) 500, 505, 591, 681, 737, 782, 813
FalI AAGNNNNNCTT 2 cut(s) 404, 436
FaqI GGGAC 1 cut(s) 963
FatI CATG 7 cut(s) 496, 501, 587, 677, 733, 778, 809
FbaI TGATCA 1 cut(s) 898
FblI GTMKAC 4 cut(s) 190, 231, 696, 843
Fnu4HI GCNGC 2 cut(s) 462, 731
FokI GGATG 3 cut(s) 251, 717, 975
Fsp4HI GCNGC 2 cut(s) 462, 731
FspBI CTAG 3 cut(s) 32, 891, 918
GluI GCNGC 2 cut(s) 462, 731
HaeIII GGCC 1 cut(s) 461
HapII CCGG 1 cut(s) 300
HgaI GACGC 2 cut(s) 627, 1025
Hin1I GRCGYC 2 cut(s) 976, 1036
Hin1II CATG 7 cut(s) 500, 505, 591, 681, 737, 782, 813
HincII GTYRAC 2 cut(s) 232, 844
HindII GTYRAC 2 cut(s) 232, 844
HinfI GANTC 3 cut(s) 251, 483, 887
HpaII CCGG 1 cut(s) 300
HphI GGTGA 4 cut(s) 246, 535, 562, 751
Hpy166II GTNNAC 5 cut(s) 191, 232, 697, 844, 974
Hpy188I TCNGA 6 cut(s) 51, 307, 772, 1051, 1086, 1106
Hpy188III TCNNGA 6 cut(s) 128, 153, 243, 491, 891, 956
Hpy8I GTNNAC 5 cut(s) 191, 232, 697, 844, 974
Hpy99I CGWCG 1 cut(s) 374
HpyAV CCTTC 3 cut(s) 179, 335, 1106
HpyCH4III ACNGT 3 cut(s) 762, 946, 971
HpyCH4IV ACGT 3 cut(s) 932, 976, 1054
HpyCH4V TGCA 7 cut(s) 260, 540, 557, 581, 645, 730, 809
HpyF3I CTNAG 1 cut(s) 411
HpySE526I ACGT 3 cut(s) 932, 976, 1054
Hsp92I GRCGYC 2 cut(s) 976, 1036
Hsp92II CATG 7 cut(s) 500, 505, 591, 681, 737, 782, 813
Ksp22I TGATCA 1 cut(s) 898
Kzo9I GATC 8 cut(s) 58, 83, 130, 271, 302, 610, 797, 898
LmnI GCTCC 1 cut(s) 361
Lsp1109I GCAGC 1 cut(s) 742
LweI GCATC 2 cut(s) 331, 1086
MaeI CTAG 3 cut(s) 32, 891, 918
MaeII ACGT 3 cut(s) 932, 976, 1054
MaeIII GTNAC 4 cut(s) 252, 385, 933, 1037
MalI GATC 8 cut(s) 60, 85, 132, 273, 304, 612, 799, 900
MboI GATC 8 cut(s) 58, 83, 130, 271, 302, 610, 797, 898
MboII GAAGA 6 cut(s) 68, 102, 323, 460, 559, 561
MflI RGATCY 4 cut(s) 58, 83, 130, 302
MluCI AATT 5 cut(s) 35, 353, 817, 925, 938
MlyI GAGTC 1 cut(s) 260
MmeI TCCRAC 1 cut(s) 111
MnlI CCTC 8 cut(s) 86, 158, 424, 426, 519, 694, 730, 1085
MroXI GAANNNNTTC 1 cut(s) 452
MseI TTAA 5 cut(s) 80, 356, 600, 633, 1120
MspCI CTTAAG 1 cut(s) 79
MspI CCGG 1 cut(s) 300
MspR9I CCNGG 1 cut(s) 269
Mva1269I GAATGC 1 cut(s) 260
MvaI CCWGG 1 cut(s) 269
NcoI CCATGG 1 cut(s) 496
NdeII GATC 8 cut(s) 58, 83, 130, 271, 302, 610, 797, 898
NlaIII CATG 7 cut(s) 500, 505, 591, 681, 737, 782, 813
NlaIV GGNNCC 3 cut(s) 349, 380, 882
NmuCI GTSAC 2 cut(s) 252, 1037
PaqCI CACCTGC 1 cut(s) 265
PctI GAATGC 1 cut(s) 260
PdmI GAANNNNTTC 1 cut(s) 452
PfeI GAWTC 2 cut(s) 483, 887
PflFI GACNNNGTC 1 cut(s) 1035
PflMI CCANNNNNTGG 2 cut(s) 502, 1115
PfoI TCCNGGA 1 cut(s) 267
PkrI GCNGC 2 cut(s) 463, 732
PleI GAGTC 1 cut(s) 259
PpsI GAGTC 1 cut(s) 259
Psp6I CCWGG 1 cut(s) 267
PspGI CCWGG 1 cut(s) 267
PspN4I GGNNCC 3 cut(s) 349, 380, 882
PspPI GGNCC 2 cut(s) 681, 1106
PstI CTGCAG 1 cut(s) 732
PstNI CAGNNNCTG 1 cut(s) 1049
PsuI RGATCY 4 cut(s) 58, 83, 130, 302
PsyI GACNNNGTC 1 cut(s) 1035
RsaI GTAC 3 cut(s) 597, 968, 1024
RsaNI GTAC 3 cut(s) 596, 967, 1023
SalI GTCGAC 2 cut(s) 230, 842
SaqAI TTAA 5 cut(s) 80, 356, 600, 633, 1120
SatI GCNGC 2 cut(s) 462, 731
Sau3AI GATC 8 cut(s) 58, 83, 130, 271, 302, 610, 797, 898
Sau96I GGNCC 2 cut(s) 681, 1106
ScaI AGTACT 1 cut(s) 597
SchI GAGTC 1 cut(s) 260
ScrFI CCNGG 1 cut(s) 269
SfaNI GCATC 2 cut(s) 331, 1086
SfcI CTRYAG 1 cut(s) 728
SinI GGWCC 2 cut(s) 681, 1106
SmlI CTYRAG 2 cut(s) 79, 151
SmoI CTYRAG 2 cut(s) 79, 151
Sse9I AATT 5 cut(s) 35, 353, 817, 925, 938
SsiI CCGC 2 cut(s) 462, 795
SspMI CTAG 3 cut(s) 32, 891, 918
StyD4I CCNGG 1 cut(s) 267
StyI CCWWGG 1 cut(s) 496
TaaI ACNGT 3 cut(s) 762, 946, 971
TaiI ACGT 3 cut(s) 935, 979, 1057
TaqI TCGA 5 cut(s) 231, 242, 510, 843, 1077
TasI AATT 5 cut(s) 35, 353, 817, 925, 938
TatI WGTACW 2 cut(s) 595, 1022
TauI GCSGC 1 cut(s) 464
TfiI GAWTC 2 cut(s) 483, 887
Tru1I TTAA 5 cut(s) 80, 356, 600, 633, 1120
Tru9I TTAA 5 cut(s) 80, 356, 600, 633, 1120
TseFI GTSAC 2 cut(s) 252, 1037
TseI GCWGC 1 cut(s) 730
Tsp45I GTSAC 2 cut(s) 252, 1037
TspDTI ATGAA 6 cut(s) 17, 69, 253, 317, 475, 767
TspGWI ACGGA 3 cut(s) 11, 374, 756
Tth111I GACNNNGTC 1 cut(s) 1035
Van91I CCANNNNNTGG 2 cut(s) 502, 1115
Vha464I CTTAAG 1 cut(s) 79
VpaK11BI GGWCC 2 cut(s) 681, 1106
XapI RAATTY 1 cut(s) 35
XbaI TCTAGA 1 cut(s) 890
XcmI CCANNNNNNNNNTGG 1 cut(s) 35
XmiI GTMKAC 4 cut(s) 190, 231, 696, 843
XmnI GAANNNNTTC 1 cut(s) 452
XspI CTAG 3 cut(s) 32, 891, 918
ZraI GACGTC 1 cut(s) 977
ZrmI AGTACT 1 cut(s) 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.