Rmu_sc0007593.1_g000004

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007593.1
OG0000369
Physical Location & Seq
Forward (+)
20793 .. 21896
1104 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007593.1_g000004.1.cds

Sequence Viewer

Length: 1104 bp
atgggaaccaaaagaagctgctcctctttgggtgaagatctcatggtagaaattctgtccagattacctgtgaagtctctgatgaggtttagctgcgtgtcaaaagagtggtattctctcaccagaaactcttacttgatcaatattcaccttcgtcgcgccaattcgaatctctctcttctcactcatgaatatgatcgtgataagcggttcaatactgatccaaagtttggaatctcaatgcttggagatgaagcagcagaccttgtgagtatagatttacccatcttgtcgaactcttccaagtttacaaacattgtaggatctagtaatggcttagtatgtcttgtagctagggtgaaaaagaaaacacgaaagtttatggatagtgcagaaataataatatggaacccagcaacaaaacagtttcgaagtcttcctaaacctgtacttgaggaaaatttccatcgttttgatcgtcctactcttggttttggatttagtgacgataacaccgatgattacaaattagttaatattttccataagcaagtacaagtcttcacccgaagtacaaattcttggagagaagtcgaaggcaaagggtatccatcatgtaaatattgttatggagatttttgggtttcgttgaagggagtgctgtattggtcggcaatgaccgatagatccaagggccgttttattttgtctttcaatctgcgtgatgaggtatttcatgtcatacaattaccattcgggaatgattggtactctcgacttcttctgtggaaaaactcactagcaatcgtgagcaagaatcaggtttgggtggcgaagaccgatgactctgatgagagtggtgacaataacaaaatcgtttggaccaaacaatttagcattgatttttcaatatcacgatgtgaagaggtctttggaatttggaaggatcaagtactaattcgaagacacttaggaaatgataggctttatttgtatgaccctataaccaaggaaaggggaaagttgcttcggaaacctgatgaaaagaactattatggttatggtcaactagtctattatgtggagagcctagctttagtctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

367

Amino Acids

42.68

Weight (kDa)

9.15

Isoelectric Point (pI)

37.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis pycom17g23320
rosa_chinensis RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 230
AccII CGCG 1 cut(s) 159
AciI CCGC 1 cut(s) 208
AclWI GGATC 4 cut(s) 215, 331, 681, 954
AcsI RAATTY 4 cut(s) 51, 460, 577, 936
AdeI CACNNNGTG 1 cut(s) 920
AfaI GTAC 5 cut(s) 450, 555, 574, 770, 954
AfiI CCNNNNNNNGG 3 cut(s) 230, 488, 1014
AgsI TTSAA 4 cut(s) 214, 652, 715, 909
AhlI ACTAGT 1 cut(s) 1069
AjuI GAANNNNNNNTTGG 2 cut(s) 915, 947
AluBI AGCT 4 cut(s) 18, 93, 353, 1094
AluI AGCT 4 cut(s) 18, 93, 353, 1094
Alw26I GTCTC 1 cut(s) 81
AlwI GGATC 4 cut(s) 215, 331, 681, 954
AoxI GGCC 1 cut(s) 694
ApeKI GCWGC 3 cut(s) 18, 93, 257
ApoI RAATTY 4 cut(s) 51, 460, 577, 936
AspLEI GCGC 1 cut(s) 161
AspS9I GGNCC 2 cut(s) 694, 882
AsuHPI GGTGA 6 cut(s) 44, 112, 140, 370, 556, 872
AsuII TTCGAA 3 cut(s) 167, 430, 961
AvaII GGWCC 1 cut(s) 882
BbsI GAAGAC 4 cut(s) 428, 553, 842, 970
BbvI GCAGC 3 cut(s) 5, 80, 269
BccI CCATC 3 cut(s) 293, 474, 619
BceAI ACGGC 1 cut(s) 681
BciVI GTATCC 1 cut(s) 618
BclI TGATCA 1 cut(s) 138
BcoDI GTCTC 1 cut(s) 81
BcuI ACTAGT 1 cut(s) 1069
BfaI CTAG 5 cut(s) 327, 354, 800, 1070, 1091
BfuI GTATCC 1 cut(s) 618
BglII AGATCT 1 cut(s) 37
BisI GCNGC 3 cut(s) 19, 94, 258
BlsI GCNGC 3 cut(s) 20, 95, 259
BmcAI AGTACT 1 cut(s) 954
Bme18I GGWCC 1 cut(s) 882
BmgT120I GGNCC 2 cut(s) 694, 882
BmiI GGNNCC 2 cut(s) 7, 410
BpiI GAAGAC 4 cut(s) 428, 553, 842, 970
Bpu14I TTCGAA 3 cut(s) 167, 430, 961
BpuEI CTTGAG 1 cut(s) 473
BsaJI CCNNGG 2 cut(s) 690, 1008
Bsc4I CCNNNNNNNGG 3 cut(s) 230, 488, 1014
Bse3DI GCAATG 1 cut(s) 681
BseDI CCNNGG 2 cut(s) 690, 1008
BseLI CCNNNNNNNGG 3 cut(s) 230, 488, 1014
BseMI GCAATG 1 cut(s) 681
BseRI GAGGAG 1 cut(s) 13
BseXI GCAGC 3 cut(s) 5, 80, 269
BseYI CCCAGC 1 cut(s) 412
BsgI GTGCAG 1 cut(s) 411
Bsh1236I CGCG 1 cut(s) 159
BshFI GGCC 1 cut(s) 696
BslI CCNNNNNNNGG 3 cut(s) 230, 488, 1014
BsmAI GTCTC 1 cut(s) 81
BsnI GGCC 1 cut(s) 696
Bsp119I TTCGAA 3 cut(s) 167, 430, 961
Bsp143I GATC 8 cut(s) 37, 138, 196, 220, 323, 475, 686, 946
BspACI CCGC 1 cut(s) 208
BspANI GGCC 1 cut(s) 696
BspFNI CGCG 1 cut(s) 159
BspHI TCATGA 1 cut(s) 187
BspLI GGNNCC 2 cut(s) 7, 410
BspPI GGATC 4 cut(s) 215, 331, 681, 954
BspT104I TTCGAA 3 cut(s) 167, 430, 961
BsrDI GCAATG 1 cut(s) 681
BssECI CCNNGG 2 cut(s) 690, 1008
BssMI GATC 8 cut(s) 37, 138, 196, 220, 323, 475, 686, 946
BssT1I CCWWGG 2 cut(s) 690, 1008
Bst4CI ACNGT 1 cut(s) 426
Bst6I CTCTTC 3 cut(s) 183, 304, 918
BstBI TTCGAA 3 cut(s) 167, 430, 961
BstDEI CTNAG 2 cut(s) 337, 970
BstFNI CGCG 1 cut(s) 159
BstHHI GCGC 1 cut(s) 161
BstKTI GATC 8 cut(s) 40, 141, 199, 223, 326, 478, 689, 949
BstMAI GTCTC 1 cut(s) 81
BstMBI GATC 8 cut(s) 37, 138, 196, 220, 323, 475, 686, 946
BstUI CGCG 1 cut(s) 159
BstV1I GCAGC 3 cut(s) 5, 80, 269
BstV2I GAAGAC 4 cut(s) 428, 553, 842, 970
BstX2I RGATCY 3 cut(s) 37, 323, 686
BstYI RGATCY 3 cut(s) 37, 323, 686
BsuI GTATCC 1 cut(s) 618
BsuRI GGCC 1 cut(s) 696
CciI TCATGA 1 cut(s) 187
CfoI GCGC 1 cut(s) 161
Cfr13I GGNCC 2 cut(s) 694, 882
Csp6I GTAC 5 cut(s) 449, 554, 573, 769, 953
CviAII CATG 4 cut(s) 43, 188, 615, 737
CviJI RGCY 8 cut(s) 18, 93, 336, 353, 696, 985, 1089, 1094
CviKI_1 RGCY 8 cut(s) 18, 93, 336, 353, 696, 985, 1089, 1094
CviQI GTAC 5 cut(s) 449, 554, 573, 769, 953
DdeI CTNAG 2 cut(s) 337, 970
DpnI GATC 8 cut(s) 39, 140, 198, 222, 325, 477, 688, 948
DpnII GATC 8 cut(s) 37, 138, 196, 220, 323, 475, 686, 946
DraIII CACNNNGTG 1 cut(s) 920
Eam1104I CTCTTC 3 cut(s) 183, 304, 918
EarI CTCTTC 3 cut(s) 183, 304, 918
Eco130I CCWWGG 2 cut(s) 690, 1008
Eco47I GGWCC 1 cut(s) 882
EcoT14I CCWWGG 2 cut(s) 690, 1008
ErhI CCWWGG 2 cut(s) 690, 1008
FaeI CATG 4 cut(s) 46, 191, 618, 740
FatI CATG 4 cut(s) 42, 187, 614, 736
FbaI TGATCA 1 cut(s) 138
Fnu4HI GCNGC 3 cut(s) 19, 94, 258
Fsp4HI GCNGC 3 cut(s) 19, 94, 258
FspBI CTAG 5 cut(s) 327, 354, 800, 1070, 1091
GlaI GCGC 1 cut(s) 160
GluI GCNGC 3 cut(s) 19, 94, 258
GsaI CCCAGC 1 cut(s) 416
HaeIII GGCC 1 cut(s) 696
HhaI GCGC 1 cut(s) 161
Hin1II CATG 4 cut(s) 46, 191, 618, 740
Hin6I GCGC 1 cut(s) 159
HinP1I GCGC 1 cut(s) 159
HincII GTYRAC 1 cut(s) 1067
HindII GTYRAC 1 cut(s) 1067
HinfI GANTC 4 cut(s) 169, 234, 817, 845
HphI GGTGA 6 cut(s) 44, 112, 140, 370, 556, 872
Hpy166II GTNNAC 2 cut(s) 309, 1067
Hpy188I TCNGA 3 cut(s) 81, 850, 1032
Hpy188III TCNNGA 7 cut(s) 60, 188, 200, 757, 774, 808, 915
Hpy8I GTNNAC 2 cut(s) 309, 1067
Hpy99I CGWCG 1 cut(s) 159
HpyAV CCTTC 4 cut(s) 161, 590, 646, 937
HpyCH4III ACNGT 1 cut(s) 426
HpyCH4V TGCA 1 cut(s) 392
HpyF3I CTNAG 2 cut(s) 337, 970
Hsp92II CATG 4 cut(s) 46, 191, 618, 740
HspAI GCGC 1 cut(s) 159
Ksp22I TGATCA 1 cut(s) 138
Kzo9I GATC 8 cut(s) 37, 138, 196, 220, 323, 475, 686, 946
LmnI GCTCC 1 cut(s) 26
LpnPI CCDG 7 cut(s) 73, 81, 136, 426, 459, 806, 1050
Lsp1109I GCAGC 3 cut(s) 5, 80, 269
MaeI CTAG 5 cut(s) 327, 354, 800, 1070, 1091
MaeIII GTNAC 2 cut(s) 503, 860
MalI GATC 8 cut(s) 39, 140, 198, 222, 325, 477, 688, 948
MboI GATC 8 cut(s) 37, 138, 196, 220, 323, 475, 686, 946
MboII GAAGA 9 cut(s) 47, 170, 291, 428, 553, 773, 847, 935, 975
MflI RGATCY 3 cut(s) 37, 323, 686
MluCI AATT 9 cut(s) 51, 163, 460, 527, 577, 746, 890, 936, 957
MlyI GAGTC 1 cut(s) 839
MnlI CCTC 5 cut(s) 34, 78, 448, 721, 919
MseI TTAA 1 cut(s) 534
MslI CAYNNNNRTG 1 cut(s) 192
MvnI CGCG 1 cut(s) 159
NdeII GATC 8 cut(s) 37, 138, 196, 220, 323, 475, 686, 946
NlaIII CATG 4 cut(s) 46, 191, 618, 740
NlaIV GGNNCC 2 cut(s) 7, 410
NmuCI GTSAC 2 cut(s) 503, 860
NspV TTCGAA 3 cut(s) 167, 430, 961
PagI TCATGA 1 cut(s) 187
PcsI WCGNNNNNNNCGW 2 cut(s) 475, 513
PfeI GAWTC 3 cut(s) 169, 234, 817
PflMI CCANNNNNTGG 1 cut(s) 230
PkrI GCNGC 3 cut(s) 20, 95, 259
PleI GAGTC 1 cut(s) 839
PpsI GAGTC 1 cut(s) 839
PspFI CCCAGC 1 cut(s) 412
PspN4I GGNNCC 2 cut(s) 7, 410
PspPI GGNCC 2 cut(s) 694, 882
PsuI RGATCY 3 cut(s) 37, 323, 686
RsaI GTAC 5 cut(s) 450, 555, 574, 770, 954
RsaNI GTAC 5 cut(s) 449, 554, 573, 769, 953
RseI CAYNNNNRTG 1 cut(s) 192
SaqAI TTAA 1 cut(s) 534
SatI GCNGC 3 cut(s) 19, 94, 258
Sau3AI GATC 8 cut(s) 37, 138, 196, 220, 323, 475, 686, 946
Sau96I GGNCC 2 cut(s) 694, 882
ScaI AGTACT 1 cut(s) 954
SchI GAGTC 1 cut(s) 839
SfuI TTCGAA 3 cut(s) 167, 430, 961
SinI GGWCC 1 cut(s) 882
SmiMI CAYNNNNRTG 1 cut(s) 192
SmlI CTYRAG 1 cut(s) 452
SmoI CTYRAG 1 cut(s) 452
SpeI ACTAGT 1 cut(s) 1069
Sse9I AATT 9 cut(s) 51, 163, 460, 527, 577, 746, 890, 936, 957
SsiI CCGC 1 cut(s) 208
SspI AATATT 3 cut(s) 145, 538, 623
SspMI CTAG 5 cut(s) 327, 354, 800, 1070, 1091
StyI CCWWGG 2 cut(s) 690, 1008
TaaI ACNGT 1 cut(s) 426
TaqI TCGA 6 cut(s) 167, 293, 430, 594, 775, 961
TaqII GACCGA 2 cut(s) 695, 854
TasI AATT 9 cut(s) 51, 163, 460, 527, 577, 746, 890, 936, 957
TatI WGTACW 4 cut(s) 448, 553, 572, 952
TfiI GAWTC 3 cut(s) 169, 234, 817
Tru1I TTAA 1 cut(s) 534
Tru9I TTAA 1 cut(s) 534
TseFI GTSAC 2 cut(s) 503, 860
TseI GCWGC 3 cut(s) 18, 93, 257
Tsp45I GTSAC 2 cut(s) 503, 860
TspDTI ATGAA 4 cut(s) 204, 267, 725, 1056
Van91I CCANNNNNTGG 1 cut(s) 230
VpaK11BI GGWCC 1 cut(s) 882
XapI RAATTY 4 cut(s) 51, 460, 577, 936
XspI CTAG 5 cut(s) 327, 354, 800, 1070, 1091
ZrmI AGTACT 1 cut(s) 954
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.