Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000369

Physical Location & Seq

Genomic Coordinates Reverse (-)

4562501 .. 4563670

Gene Structure 1170 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16401

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGGAATGGAGGCAGGCGAAGTAGTAAAGGTATCCTCTTCTTTGGCCGACAATCAAGACCTTGTAATAGAAATCCTCTCACAGTTACCTATCAAATCTTTAGTTAGGTTTATGTGTGTGTCGCAAGAGTGGTCTGCTCTCATAAAAAGCTCTCGTTTCATTGCAATTCACCAAAAATGCCTTCAACGATTGAATCCTCCGAATCTCTGTTTACTCTACGGTCACAGTTCCGGAAGTAGATTTGCTAAATATCCCAAGCACCATGGGATTTCATTGCTTGGCAAAGACACACATTTGGAGGGATTAGATCTGCCTGAACGTGTCCAGCAAGACTCTTATGATAGGTTGATACTTATTGCGGGATCTAGCAATGGTCTAGTCTGCCTTTATCCTCTTAACACTCCAAAGGAGATAATCGTCGTGTGGAACCCAGCAACAAGACAGCATAGGTATCTTCCTAAACCATTGTCTTTTAAGGGTAGGAAGGAGACTTCTGATGCTCCACTGTTAGGTTTCGGATTCATTAACGACAATGGTAAGTATAATACTGATTTCAAAGTCGTGAGGATTTCCCACAGCAAGGATCGTGATGCTGATGGAAGGTTTACATACCTAACCCAAGTCTTCACCCGAAGTGAGAAGTCATGGAGAGAAGTTAAAAACTGTATTCCACCAGGCGATTATAACTTTGAACCAGGCTCTTCAATTTCTTCGAATGGTGTGGTGTATTGCTTGGCAAGGACTAAGGGTGTTCCTTTTGTTTTCTCCTTCAATCTGCATGATGAGGTAATCCATAACATGCCAATGCCGCCTCGTTACAGTCTTTTTTATGGCCAACGTCTCTTTACGTGGGAAAATTCAGTTGCATTTTTAACCCATGTTGAACGTAAGTATGATCTTTGGGTAATGGAGAAAGAATCCGGTACACAAATGCCTACTTGGAATTGGACTGCGCAATTTACAATCAAAAATCTGCCACAATTTATGGATTTAATCTTTGTATTCTGGGATGGTTTATTTCTGTTTGTCAAAAGGCAGGTCAGAGCTGGACAAGATCTGGTTACGTATGATCGAGCTACAACCGGAGCGATGAAGGCTTTCAAACTTGCAACAGGGAACTCATGCCTTCAAGTGGTAGATTACGTTCAGAGCTTGGTTTCAGTATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0006139 GO:0006351 GO:0006366 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019899 GO:0019904 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0046483 GO:0070063 GO:0071704 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD zf-RING_2

Protein Analysis

389

Amino Acids

44.38

Weight (kDa)

9.01

Isoelectric Point (pI)

32.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	20 - 53	7.2e-08	F-box domain
FBA_3	PF08268	116 - 308	5.5e-19	F-box associated beta propeller domain
FBA_1	PF07734	123 - 388	6.9e-18	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000369)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica	MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica	Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis	pycom17g23320
rosa_chinensis	RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata	RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora	Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa	Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha	Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana	Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	684
Acc16I	TGCGCA	1 cut(s)	954
Acc36I	ACCTGC	1 cut(s)	1027
AccIII	TCCGGA	1 cut(s)	230
AciI	CCGC	2 cut(s)	359, 809
AclWI	GGATC	2 cut(s)	370, 591
AcoI	YGGCCR	2 cut(s)	45, 832
AcsI	RAATTY	1 cut(s)	856
AfaI	GTAC	1 cut(s)	925
AfiI	CCNNNNNNNGG	3 cut(s)	509, 580, 1132
AflIII	ACRYGT	1 cut(s)	319
AgsI	TTSAA	9 cut(s)	185, 193, 556, 692, 705, 772, 884, 1102, 1130
AjnI	CCWGG	2 cut(s)	673, 694
AjuI	GAANNNNNNNTTGG	2 cut(s)	165, 197
AluBI	AGCT	4 cut(s)	150, 1046, 1076, 1152
AluI	AGCT	4 cut(s)	150, 1046, 1076, 1152
Alw26I	GTCTC	2 cut(s)	482, 845
AlwI	GGATC	2 cut(s)	370, 591
Aor13HI	TCCGGA	1 cut(s)	230
AoxI	GGCC	2 cut(s)	45, 832
ApoI	RAATTY	1 cut(s)	856
ArsI	GACNNNNNNTTYG	2 cut(s)	1023, 1055
Asp700I	GAANNNNTTC	1 cut(s)	1097
AspLEI	GCGC	1 cut(s)	955
AsuHPI	GGTGA	2 cut(s)	161, 619
AsuII	TTCGAA	1 cut(s)	713
BalI	TGGCCA	1 cut(s)	834
BbsI	GAAGAC	1 cut(s)	616
BccI	CCATC	2 cut(s)	590, 1004
BciT130I	CCWGG	2 cut(s)	675, 696
BciVI	GTATCC	1 cut(s)	43
BcoDI	GTCTC	2 cut(s)	482, 845
BfaI	CTAG	2 cut(s)	366, 377
BfuAI	ACCTGC	1 cut(s)	1027
BfuI	GTATCC	1 cut(s)	43
BglII	AGATCT	2 cut(s)	307, 1054
BisI	GCNGC	1 cut(s)	809
BlsI	GCNGC	1 cut(s)	810
Bme1390I	CCNGG	2 cut(s)	675, 696
BmiI	GGNNCC	1 cut(s)	428
BmrFI	CCNGG	2 cut(s)	675, 696
BmsI	GCATC	2 cut(s)	487, 580
BpiI	GAAGAC	1 cut(s)	616
Bpu14I	TTCGAA	1 cut(s)	713
BsaAI	YACGTR	2 cut(s)	849, 1065
BsaJI	CCNNGG	1 cut(s)	262
BsaWI	WCCGGW	3 cut(s)	230, 920, 1082
Bsc4I	CCNNNNNNNGG	3 cut(s)	509, 580, 1132
Bse3DI	GCAATG	3 cut(s)	159, 272, 376
BseAI	TCCGGA	1 cut(s)	230
BseBI	CCWGG	2 cut(s)	675, 696
BseDI	CCNNGG	1 cut(s)	262
BseGI	GGATG	1 cut(s)	1015
BseLI	CCNNNNNNNGG	3 cut(s)	509, 580, 1132
BseMI	GCAATG	3 cut(s)	159, 272, 376
BseYI	CCCAGC	1 cut(s)	430
BshFI	GGCC	2 cut(s)	47, 834
BsiSI	CCGG	3 cut(s)	231, 921, 1083
BslI	CCNNNNNNNGG	3 cut(s)	509, 580, 1132
BsmAI	GTCTC	2 cut(s)	482, 845
BsmBI	CGTCTC	1 cut(s)	845
BsnI	GGCC	2 cut(s)	47, 834
Bsp119I	TTCGAA	1 cut(s)	713
Bsp13I	TCCGGA	1 cut(s)	230
Bsp143I	GATC	6 cut(s)	307, 362, 583, 895, 1054, 1069
Bsp19I	CCATGG	1 cut(s)	262
BspACI	CCGC	2 cut(s)	359, 809
BspANI	GGCC	2 cut(s)	47, 834
BspEI	TCCGGA	1 cut(s)	230
BspLI	GGNNCC	1 cut(s)	428
BspMI	ACCTGC	1 cut(s)	1027
BspPI	GGATC	2 cut(s)	370, 591
BspQI	GCTCTTC	1 cut(s)	706
BspT104I	TTCGAA	1 cut(s)	713
BsrDI	GCAATG	3 cut(s)	159, 272, 376
BssECI	CCNNGG	1 cut(s)	262
BssMI	GATC	6 cut(s)	307, 362, 583, 895, 1054, 1069
BssT1I	CCWWGG	1 cut(s)	262
Bst2UI	CCWGG	2 cut(s)	675, 696
Bst4CI	ACNGT	6 cut(s)	84, 221, 227, 507, 665, 821
Bst6I	CTCTTC	2 cut(s)	43, 706
BstBAI	YACGTR	2 cut(s)	849, 1065
BstBI	TTCGAA	1 cut(s)	713
BstC8I	GCNNGC	1 cut(s)	16
BstDEI	CTNAG	1 cut(s)	744
BstDSI	CCRYGG	1 cut(s)	262
BstF5I	GGATG	1 cut(s)	1015
BstHHI	GCGC	1 cut(s)	955
BstKTI	GATC	6 cut(s)	310, 365, 586, 898, 1057, 1072
BstMAI	GTCTC	2 cut(s)	482, 845
BstMBI	GATC	6 cut(s)	307, 362, 583, 895, 1054, 1069
BstMWI	GCNNNNNNNGC	2 cut(s)	808, 1094
BstNI	CCWGG	2 cut(s)	675, 696
BstNSI	RCATGY	1 cut(s)	802
BstSCI	CCNGG	2 cut(s)	673, 694
BstSNI	TACGTA	1 cut(s)	1065
BstV2I	GAAGAC	1 cut(s)	616
BstX2I	RGATCY	3 cut(s)	307, 362, 1054
BstYI	RGATCY	3 cut(s)	307, 362, 1054
BsuI	GTATCC	1 cut(s)	43
BsuRI	GGCC	2 cut(s)	47, 834
BtgI	CCRYGG	1 cut(s)	262
BtgZI	GCGATG	1 cut(s)	1103
BtsCI	GGATG	1 cut(s)	1015
BtsIMutI	CAGTG	1 cut(s)	503
BveI	ACCTGC	1 cut(s)	1027
Cac8I	GCNNGC	1 cut(s)	16
CfoI	GCGC	1 cut(s)	955
Csp6I	GTAC	1 cut(s)	924
CviAII	CATG	6 cut(s)	263, 645, 779, 799, 878, 1122
CviJI	RGCY	8 cut(s)	47, 150, 699, 834, 1046, 1076, 1097, 1152
CviKI_1	RGCY	8 cut(s)	47, 150, 699, 834, 1046, 1076, 1097, 1152
CviQI	GTAC	1 cut(s)	924
DdeI	CTNAG	1 cut(s)	744
DpnI	GATC	6 cut(s)	309, 364, 585, 897, 1056, 1071
DpnII	GATC	6 cut(s)	307, 362, 583, 895, 1054, 1069
EaeI	YGGCCR	2 cut(s)	45, 832
Eam1104I	CTCTTC	2 cut(s)	43, 706
EarI	CTCTTC	2 cut(s)	43, 706
Eco105I	TACGTA	1 cut(s)	1065
Eco130I	CCWWGG	1 cut(s)	262
EcoRII	CCWGG	2 cut(s)	673, 694
EcoT14I	CCWWGG	1 cut(s)	262
ErhI	CCWWGG	1 cut(s)	262
Esp3I	CGTCTC	1 cut(s)	845
FaeI	CATG	6 cut(s)	266, 648, 782, 802, 881, 1125
FatI	CATG	6 cut(s)	262, 644, 778, 798, 877, 1121
FauI	CCCGC	1 cut(s)	352
Fnu4HI	GCNGC	1 cut(s)	809
FokI	GGATG	1 cut(s)	1022
Fsp4HI	GCNGC	1 cut(s)	809
FspBI	CTAG	2 cut(s)	366, 377
FspI	TGCGCA	1 cut(s)	954
GlaI	GCGC	1 cut(s)	954
GluI	GCNGC	1 cut(s)	809
GsaI	CCCAGC	1 cut(s)	434
HaeIII	GGCC	2 cut(s)	47, 834
HapII	CCGG	3 cut(s)	231, 921, 1083
HhaI	GCGC	1 cut(s)	955
Hin1II	CATG	6 cut(s)	266, 648, 782, 802, 881, 1125
Hin6I	GCGC	1 cut(s)	953
HinP1I	GCGC	1 cut(s)	953
HinfI	GANTC	5 cut(s)	193, 202, 332, 519, 917
HpaII	CCGG	3 cut(s)	231, 921, 1083
HphI	GGTGA	2 cut(s)	161, 619
Hpy166II	GTNNAC	3 cut(s)	212, 606, 926
Hpy188I	TCNGA	5 cut(s)	201, 496, 518, 1043, 1149
Hpy188III	TCNNGA	4 cut(s)	56, 231, 562, 587
Hpy8I	GTNNAC	3 cut(s)	212, 606, 926
Hpy99I	CGWCG	1 cut(s)	422
HpyAV	CCTTC	6 cut(s)	191, 478, 594, 778, 1087, 1136
HpyCH4III	ACNGT	6 cut(s)	84, 221, 227, 507, 665, 821
HpyCH4IV	ACGT	6 cut(s)	319, 838, 848, 886, 1064, 1143
HpyCH4V	TGCA	4 cut(s)	164, 778, 866, 1109
HpyF10VI	GCNNNNNNNGC	2 cut(s)	808, 1094
HpyF3I	CTNAG	1 cut(s)	744
HpySE526I	ACGT	6 cut(s)	319, 838, 848, 886, 1064, 1143
Hsp92II	CATG	6 cut(s)	266, 648, 782, 802, 881, 1125
HspAI	GCGC	1 cut(s)	953
Kpn2I	TCCGGA	1 cut(s)	230
Kzo9I	GATC	6 cut(s)	307, 362, 583, 895, 1054, 1069
LguI	GCTCTTC	1 cut(s)	706
LmnI	GCTCC	2 cut(s)	505, 1085
LweI	GCATC	2 cut(s)	487, 580
MaeI	CTAG	2 cut(s)	366, 377
MaeII	ACGT	6 cut(s)	319, 838, 848, 886, 1064, 1143
MaeIII	GTNAC	4 cut(s)	84, 221, 815, 1060
MalI	GATC	6 cut(s)	309, 364, 585, 897, 1056, 1071
MboI	GATC	6 cut(s)	307, 362, 583, 895, 1054, 1069
MboII	GAAGA	5 cut(s)	30, 446, 616, 693, 702
MflI	RGATCY	3 cut(s)	307, 362, 1054
MlsI	TGGCCA	1 cut(s)	834
MluCI	AATT	6 cut(s)	165, 705, 856, 943, 956, 980
MluNI	TGGCCA	1 cut(s)	834
MlyI	GAGTC	1 cut(s)	326
MnlI	CCTC	9 cut(s)	4, 46, 86, 207, 292, 402, 558, 778, 822
Mox20I	TGGCCA	1 cut(s)	834
MroI	TCCGGA	1 cut(s)	230
MroXI	GAANNNNTTC	1 cut(s)	1097
MscI	TGGCCA	1 cut(s)	834
MseI	TTAA	6 cut(s)	396, 474, 525, 657, 872, 992
MslI	CAYNNNNRTG	1 cut(s)	803
Msp20I	TGGCCA	1 cut(s)	834
MspI	CCGG	3 cut(s)	231, 921, 1083
MspR9I	CCNGG	2 cut(s)	675, 696
MvaI	CCWGG	2 cut(s)	675, 696
MwoI	GCNNNNNNNGC	2 cut(s)	808, 1094
NcoI	CCATGG	1 cut(s)	262
NdeII	GATC	6 cut(s)	307, 362, 583, 895, 1054, 1069
NlaIII	CATG	6 cut(s)	266, 648, 782, 802, 881, 1125
NlaIV	GGNNCC	1 cut(s)	428
NmuCI	GTSAC	1 cut(s)	221
NsbI	TGCGCA	1 cut(s)	954
NspI	RCATGY	1 cut(s)	802
NspV	TTCGAA	1 cut(s)	713
PciSI	GCTCTTC	1 cut(s)	706
PdmI	GAANNNNTTC	1 cut(s)	1097
PfeI	GAWTC	4 cut(s)	193, 202, 519, 917
PkrI	GCNGC	1 cut(s)	810
PleI	GAGTC	1 cut(s)	326
PpsI	GAGTC	1 cut(s)	326
Ppu21I	YACGTR	2 cut(s)	849, 1065
PsiI	TTATAA	1 cut(s)	684
Psp6I	CCWGG	2 cut(s)	673, 694
PspFI	CCCAGC	1 cut(s)	430
PspGI	CCWGG	2 cut(s)	673, 694
PspN4I	GGNNCC	1 cut(s)	428
PsrI	GAACNNNNNNTAC	2 cut(s)	1128, 1160
PsuI	RGATCY	3 cut(s)	307, 362, 1054
RsaI	GTAC	1 cut(s)	925
RsaNI	GTAC	1 cut(s)	924
RseI	CAYNNNNRTG	1 cut(s)	803
SapI	GCTCTTC	1 cut(s)	706
SaqAI	TTAA	6 cut(s)	396, 474, 525, 657, 872, 992
SatI	GCNGC	1 cut(s)	809
Sau3AI	GATC	6 cut(s)	307, 362, 583, 895, 1054, 1069
SchI	GAGTC	1 cut(s)	326
ScrFI	CCNGG	2 cut(s)	675, 696
SfaNI	GCATC	2 cut(s)	487, 580
SfuI	TTCGAA	1 cut(s)	713
SmiMI	CAYNNNNRTG	1 cut(s)	803
SnaBI	TACGTA	1 cut(s)	1065
Sse9I	AATT	6 cut(s)	165, 705, 856, 943, 956, 980
SsiI	CCGC	2 cut(s)	359, 809
SspMI	CTAG	2 cut(s)	366, 377
StyD4I	CCNGG	2 cut(s)	673, 694
StyI	CCWWGG	1 cut(s)	262
TaaI	ACNGT	6 cut(s)	84, 221, 227, 507, 665, 821
TaiI	ACGT	6 cut(s)	322, 841, 851, 889, 1067, 1146
TaqI	TCGA	2 cut(s)	713, 1072
TasI	AATT	6 cut(s)	165, 705, 856, 943, 956, 980
TauI	GCSGC	1 cut(s)	811
TfiI	GAWTC	4 cut(s)	193, 202, 519, 917
Tru1I	TTAA	6 cut(s)	396, 474, 525, 657, 872, 992
Tru9I	TTAA	6 cut(s)	396, 474, 525, 657, 872, 992
TscAI	CASTG	1 cut(s)	510
TseFI	GTSAC	1 cut(s)	221
Tsp45I	GTSAC	1 cut(s)	221
TspDTI	ATGAA	4 cut(s)	148, 261, 511, 1106
TspRI	CASTG	1 cut(s)	510
XapI	RAATTY	1 cut(s)	856
XceI	RCATGY	1 cut(s)	802
XmnI	GAANNNNTTC	1 cut(s)	1097
XspI	CTAG	2 cut(s)	366, 377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.