Rh7CG063000

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000369
Physical Location & Seq
Reverse (-)
4579232 .. 4580588
1357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG063000.1

Sequence Viewer

Length: 1176 bp
ATGGGAATGGAGGCAGGCGAAGTAGTAAAGGTATCCTCTTCTTTGGCCGACAATCAAGACCTTGCAATAGAAATCCTCTCACAGTTACCTATCAAATCTTTAGTTAGGTTTATGTGTGTGTCGCAAGAGTGGTCTGCTCTCATAAAAAGCTCTCGTTTCATTGCAATTCACCAAAAATGCCTTCAACGCTTGAATCCTCCGAATCTCTGTTTACTCTACGGTCACAGTTCCGGAAGTAGATATGCTAAATATCCCAAGCACCATGGGATTTCATTGCTTGGCAAAGACACACATTTGGAGGGATTAGATCTGCCTGAACGTGTCCAGCAAGACTCTTACGATAGGTTGATACTTATTGCGGGATCTAGCAATGGTCTAGTCTGCCTTTATCCTCTTAACACTCCGAAGGAGATAATCGTCGTGTGGAACCCAGCAACAAGACAGCATAGGTATCTTCCTAAACCATTGTCTTTTAAGGGTAGGAAGGAGACTTCTGATGCTCCACTGTTAGGTTTCGGATTCATTAACGACAATGGCAAGTATAATACTGATTTCAAAGTCGTGAGGATTTCCCACAGCAAGGATCGTGATGCTTATGGAAGGTTTACATACCTAACCCAAGTCTTCACCCGAAGTGAAAAGTCATGGAGAGAAGTTAAAAACTGTATTCCACCAGGCGATTATAACTTTGAACCAGGCTCTTCGATTTCTTCGAATGGTGTGTTGTATTGCTTGGCAAGGACTAGGGGTGTTCCTTCTATTTTCTTGTTCAATCTGCATGATGAGGTAGTCCTTGACATGCCAATGCCGCCTCGTTACAGTTTTTTTTATGGCCAAAGTCTCTTTACGTGGGAAAATTCAGTTGCATTTTTAACCTATGTCGACCATAAGTATGATCTTTGGGTGATGAAGAAAGAATCCGGTACACAAATGCCTACTTGGAATTGGACTGCACAATTTACAATAAAAAAACTCCCACAATCTACGTATGCAATCCTTGTATTCTGGTTTGGTTTATTTCTGTTTGTCAAAAGGCACGTCAAAGCTGGACAAGATCTGGTTACGTATGAATATGCTTCAGCTACAGCCGAAGCGATGAAGGCTTTCAAACTTGCGACAGGGAACTCATGCCTTCAAGTGGTAGATTACGTGCAGAGCTTAGTTTCAGTATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

391

Amino Acids

44.48

Weight (kDa)

9.04

Isoelectric Point (pI)

35.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 20 - 53 2.5e-07 F-box domain
FBA_3 PF08268 117 - 307 1.5e-16 F-box associated beta propeller domain
FBA_1 PF07734 123 - 390 6.8e-16 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis pycom17g23320
rosa_chinensis RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 684
AccI GTMKAC 1 cut(s) 882
AccIII TCCGGA 1 cut(s) 230
AciI CCGC 2 cut(s) 359, 809
AclWI GGATC 2 cut(s) 370, 591
AcoI YGGCCR 2 cut(s) 45, 832
AcsI RAATTY 1 cut(s) 856
AcuI CTGAAG 1 cut(s) 1062
AfaI GTAC 1 cut(s) 925
AfiI CCNNNNNNNGG 3 cut(s) 509, 580, 1138
AflIII ACRYGT 1 cut(s) 319
AgsI TTSAA 7 cut(s) 185, 193, 556, 692, 772, 1108, 1136
AjiI CACGTC 1 cut(s) 1039
AjnI CCWGG 2 cut(s) 673, 694
AjuI GAANNNNNNNTTGG 2 cut(s) 165, 197
AluBI AGCT 4 cut(s) 150, 1046, 1082, 1158
AluI AGCT 4 cut(s) 150, 1046, 1082, 1158
Alw26I GTCTC 2 cut(s) 482, 845
AlwI GGATC 2 cut(s) 370, 591
Aor13HI TCCGGA 1 cut(s) 230
AoxI GGCC 2 cut(s) 45, 832
ApoI RAATTY 1 cut(s) 856
ArsI GACNNNNNNTTYG 2 cut(s) 1023, 1055
Asp700I GAANNNNTTC 1 cut(s) 1103
AsuHPI GGTGA 3 cut(s) 161, 619, 916
AsuII TTCGAA 1 cut(s) 713
BalI TGGCCA 1 cut(s) 834
BbsI GAAGAC 1 cut(s) 616
BciT130I CCWGG 2 cut(s) 675, 696
BciVI GTATCC 1 cut(s) 43
BcoDI GTCTC 2 cut(s) 482, 845
BfaI CTAG 3 cut(s) 366, 377, 744
BfmI CTRYAG 1 cut(s) 1083
BfuI GTATCC 1 cut(s) 43
BglII AGATCT 2 cut(s) 307, 1054
BisI GCNGC 1 cut(s) 809
BlsI GCNGC 1 cut(s) 810
Bme1390I CCNGG 2 cut(s) 675, 696
BmgBI CACGTC 1 cut(s) 1039
BmiI GGNNCC 1 cut(s) 428
BmrFI CCNGG 2 cut(s) 675, 696
BmsI GCATC 2 cut(s) 487, 580
BpiI GAAGAC 1 cut(s) 616
Bpu14I TTCGAA 1 cut(s) 713
BsaAI YACGTR 4 cut(s) 849, 987, 1065, 1150
BsaJI CCNNGG 1 cut(s) 262
BsaWI WCCGGW 2 cut(s) 230, 920
Bsc4I CCNNNNNNNGG 3 cut(s) 509, 580, 1138
Bse3DI GCAATG 3 cut(s) 159, 272, 376
BseAI TCCGGA 1 cut(s) 230
BseBI CCWGG 2 cut(s) 675, 696
BseDI CCNNGG 1 cut(s) 262
BseLI CCNNNNNNNGG 3 cut(s) 509, 580, 1138
BseMI GCAATG 3 cut(s) 159, 272, 376
BseYI CCCAGC 1 cut(s) 430
BsgI GTGCAG 2 cut(s) 936, 1172
BshFI GGCC 2 cut(s) 47, 834
BsiSI CCGG 2 cut(s) 231, 921
BslI CCNNNNNNNGG 3 cut(s) 509, 580, 1138
BsmAI GTCTC 2 cut(s) 482, 845
BsnI GGCC 2 cut(s) 47, 834
Bsp119I TTCGAA 1 cut(s) 713
Bsp13I TCCGGA 1 cut(s) 230
Bsp143I GATC 5 cut(s) 307, 362, 583, 895, 1054
Bsp19I CCATGG 1 cut(s) 262
BspACI CCGC 2 cut(s) 359, 809
BspANI GGCC 2 cut(s) 47, 834
BspEI TCCGGA 1 cut(s) 230
BspLI GGNNCC 1 cut(s) 428
BspPI GGATC 2 cut(s) 370, 591
BspQI GCTCTTC 1 cut(s) 706
BspT104I TTCGAA 1 cut(s) 713
BsrDI GCAATG 3 cut(s) 159, 272, 376
BssECI CCNNGG 1 cut(s) 262
BssMI GATC 5 cut(s) 307, 362, 583, 895, 1054
BssT1I CCWWGG 1 cut(s) 262
Bst2UI CCWGG 2 cut(s) 675, 696
Bst4CI ACNGT 6 cut(s) 84, 221, 227, 507, 665, 821
Bst6I CTCTTC 2 cut(s) 43, 706
BstBAI YACGTR 4 cut(s) 849, 987, 1065, 1150
BstBI TTCGAA 1 cut(s) 713
BstC8I GCNNGC 1 cut(s) 16
BstDEI CTNAG 1 cut(s) 1159
BstDSI CCRYGG 1 cut(s) 262
BstKTI GATC 5 cut(s) 310, 365, 586, 898, 1057
BstMAI GTCTC 2 cut(s) 482, 845
BstMBI GATC 5 cut(s) 307, 362, 583, 895, 1054
BstMWI GCNNNNNNNGC 3 cut(s) 186, 808, 1100
BstNI CCWGG 2 cut(s) 675, 696
BstNSI RCATGY 1 cut(s) 802
BstSCI CCNGG 2 cut(s) 673, 694
BstSFI CTRYAG 1 cut(s) 1083
BstSNI TACGTA 2 cut(s) 987, 1065
BstV2I GAAGAC 1 cut(s) 616
BstX2I RGATCY 3 cut(s) 307, 362, 1054
BstYI RGATCY 3 cut(s) 307, 362, 1054
BsuI GTATCC 1 cut(s) 43
BsuRI GGCC 2 cut(s) 47, 834
BtgI CCRYGG 1 cut(s) 262
BtgZI GCGATG 1 cut(s) 1109
BtrI CACGTC 1 cut(s) 1039
BtsIMutI CAGTG 1 cut(s) 503
Cac8I GCNNGC 1 cut(s) 16
Csp6I GTAC 1 cut(s) 924
CviAII CATG 5 cut(s) 263, 645, 779, 799, 1128
CviJI RGCY 9 cut(s) 47, 150, 699, 834, 1046, 1082, 1088, 1103, 1158
CviKI_1 RGCY 9 cut(s) 47, 150, 699, 834, 1046, 1082, 1088, 1103, 1158
CviQI GTAC 1 cut(s) 924
DdeI CTNAG 1 cut(s) 1159
DpnI GATC 5 cut(s) 309, 364, 585, 897, 1056
DpnII GATC 5 cut(s) 307, 362, 583, 895, 1054
EaeI YGGCCR 2 cut(s) 45, 832
Eam1104I CTCTTC 2 cut(s) 43, 706
EarI CTCTTC 2 cut(s) 43, 706
Eco105I TACGTA 2 cut(s) 987, 1065
Eco130I CCWWGG 1 cut(s) 262
Eco57I CTGAAG 1 cut(s) 1062
EcoRII CCWGG 2 cut(s) 673, 694
EcoT14I CCWWGG 1 cut(s) 262
ErhI CCWWGG 1 cut(s) 262
FaeI CATG 5 cut(s) 266, 648, 782, 802, 1131
FatI CATG 5 cut(s) 262, 644, 778, 798, 1127
FauI CCCGC 1 cut(s) 352
FblI GTMKAC 1 cut(s) 882
Fnu4HI GCNGC 1 cut(s) 809
Fsp4HI GCNGC 1 cut(s) 809
FspBI CTAG 3 cut(s) 366, 377, 744
GluI GCNGC 1 cut(s) 809
GsaI CCCAGC 1 cut(s) 434
HaeIII GGCC 2 cut(s) 47, 834
HapII CCGG 2 cut(s) 231, 921
Hin1II CATG 5 cut(s) 266, 648, 782, 802, 1131
HincII GTYRAC 1 cut(s) 883
HindII GTYRAC 1 cut(s) 883
HinfI GANTC 5 cut(s) 193, 202, 332, 519, 917
HpaII CCGG 2 cut(s) 231, 921
HphI GGTGA 3 cut(s) 161, 619, 916
Hpy166II GTNNAC 4 cut(s) 212, 606, 883, 926
Hpy188I TCNGA 4 cut(s) 201, 405, 496, 518
Hpy188III TCNNGA 4 cut(s) 56, 231, 562, 587
Hpy8I GTNNAC 4 cut(s) 212, 606, 883, 926
Hpy99I CGWCG 1 cut(s) 422
HpyAV CCTTC 7 cut(s) 191, 400, 478, 594, 765, 1093, 1142
HpyCH4III ACNGT 6 cut(s) 84, 221, 227, 507, 665, 821
HpyCH4IV ACGT 6 cut(s) 319, 848, 986, 1038, 1064, 1149
HpyCH4V TGCA 7 cut(s) 65, 164, 778, 866, 953, 992, 1153
HpyF10VI GCNNNNNNNGC 3 cut(s) 186, 808, 1100
HpyF3I CTNAG 1 cut(s) 1159
HpySE526I ACGT 6 cut(s) 319, 848, 986, 1038, 1064, 1149
Hsp92II CATG 5 cut(s) 266, 648, 782, 802, 1131
Kpn2I TCCGGA 1 cut(s) 230
Kzo9I GATC 5 cut(s) 307, 362, 583, 895, 1054
LguI GCTCTTC 1 cut(s) 706
LmnI GCTCC 1 cut(s) 505
LweI GCATC 2 cut(s) 487, 580
MaeI CTAG 3 cut(s) 366, 377, 744
MaeII ACGT 6 cut(s) 319, 848, 986, 1038, 1064, 1149
MaeIII GTNAC 4 cut(s) 84, 221, 815, 1060
MalI GATC 5 cut(s) 309, 364, 585, 897, 1056
MboI GATC 5 cut(s) 307, 362, 583, 895, 1054
MboII GAAGA 6 cut(s) 30, 446, 616, 693, 702, 922
MflI RGATCY 3 cut(s) 307, 362, 1054
MlsI TGGCCA 1 cut(s) 834
MluCI AATT 4 cut(s) 165, 856, 943, 956
MluNI TGGCCA 1 cut(s) 834
MlyI GAGTC 1 cut(s) 326
MnlI CCTC 9 cut(s) 4, 46, 86, 207, 292, 402, 558, 778, 822
Mox20I TGGCCA 1 cut(s) 834
MroI TCCGGA 1 cut(s) 230
MroXI GAANNNNTTC 1 cut(s) 1103
MscI TGGCCA 1 cut(s) 834
MseI TTAA 6 cut(s) 396, 474, 525, 657, 872, 1174
MslI CAYNNNNRTG 2 cut(s) 803, 891
Msp20I TGGCCA 1 cut(s) 834
MspI CCGG 2 cut(s) 231, 921
MspR9I CCNGG 2 cut(s) 675, 696
MvaI CCWGG 2 cut(s) 675, 696
MwoI GCNNNNNNNGC 3 cut(s) 186, 808, 1100
NcoI CCATGG 1 cut(s) 262
NdeII GATC 5 cut(s) 307, 362, 583, 895, 1054
NlaIII CATG 5 cut(s) 266, 648, 782, 802, 1131
NlaIV GGNNCC 1 cut(s) 428
NmuCI GTSAC 1 cut(s) 221
NspI RCATGY 1 cut(s) 802
NspV TTCGAA 1 cut(s) 713
PciSI GCTCTTC 1 cut(s) 706
PcsI WCGNNNNNNNCGW 1 cut(s) 710
PdmI GAANNNNTTC 1 cut(s) 1103
PfeI GAWTC 4 cut(s) 193, 202, 519, 917
PkrI GCNGC 1 cut(s) 810
PleI GAGTC 1 cut(s) 326
PpsI GAGTC 1 cut(s) 326
Ppu21I YACGTR 4 cut(s) 849, 987, 1065, 1150
PsiI TTATAA 1 cut(s) 684
Psp6I CCWGG 2 cut(s) 673, 694
PspFI CCCAGC 1 cut(s) 430
PspGI CCWGG 2 cut(s) 673, 694
PspN4I GGNNCC 1 cut(s) 428
PsuI RGATCY 3 cut(s) 307, 362, 1054
RsaI GTAC 1 cut(s) 925
RsaNI GTAC 1 cut(s) 924
RseI CAYNNNNRTG 2 cut(s) 803, 891
SalI GTCGAC 1 cut(s) 881
SapI GCTCTTC 1 cut(s) 706
SaqAI TTAA 6 cut(s) 396, 474, 525, 657, 872, 1174
SatI GCNGC 1 cut(s) 809
Sau3AI GATC 5 cut(s) 307, 362, 583, 895, 1054
SchI GAGTC 1 cut(s) 326
ScrFI CCNGG 2 cut(s) 675, 696
SfaNI GCATC 2 cut(s) 487, 580
SfcI CTRYAG 1 cut(s) 1083
SfuI TTCGAA 1 cut(s) 713
SmiMI CAYNNNNRTG 2 cut(s) 803, 891
SnaBI TACGTA 2 cut(s) 987, 1065
Sse9I AATT 4 cut(s) 165, 856, 943, 956
SsiI CCGC 2 cut(s) 359, 809
SspMI CTAG 3 cut(s) 366, 377, 744
StyD4I CCNGG 2 cut(s) 673, 694
StyI CCWWGG 1 cut(s) 262
TaaI ACNGT 6 cut(s) 84, 221, 227, 507, 665, 821
TaiI ACGT 6 cut(s) 322, 851, 989, 1041, 1067, 1152
TaqI TCGA 3 cut(s) 704, 713, 882
TasI AATT 4 cut(s) 165, 856, 943, 956
TauI GCSGC 1 cut(s) 811
TfiI GAWTC 4 cut(s) 193, 202, 519, 917
Tru1I TTAA 6 cut(s) 396, 474, 525, 657, 872, 1174
Tru9I TTAA 6 cut(s) 396, 474, 525, 657, 872, 1174
TscAI CASTG 1 cut(s) 510
TseFI GTSAC 1 cut(s) 221
Tsp45I GTSAC 1 cut(s) 221
TspDTI ATGAA 6 cut(s) 148, 261, 511, 923, 1083, 1112
TspRI CASTG 1 cut(s) 510
XapI RAATTY 1 cut(s) 856
XceI RCATGY 1 cut(s) 802
XmiI GTMKAC 1 cut(s) 882
XmnI GAANNNNTTC 1 cut(s) 1103
XspI CTAG 3 cut(s) 366, 377, 744
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.