Rorug06G0460600

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000369
Physical Location & Seq
Forward (+)
58691929 .. 58692478
550 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0460600.1

Sequence Viewer

Length: 483 bp
ATGGAAGAACAAGCACAGCCCAAATGGCGAGGCAAGTCCTCTGCTGAGGTGAATGGCCATGCAGCACAAGAGGTGTGGCCTCTCTTGGCTGATTTCTGCAACCTACACAAAGTATTCCCCAAAGTCGAGACATGTTACCAACTAGAGGGAATCGCCGGCCAAACTGGTCTAGTTCGATACTGCGCCGGATTTGCGAGCAATCGTGACGAGTCGACCATCAAGTGGGCCAAAGAGAGGCTACTGATGATCGACCCAATCAAACGGTGCTTAAGCTACGAGGTCATTGATAGTAACATGGGGTTTAAGTCATACGTAGCAATAATGCATGTAGTTCCGATAAACGGCGATGGTTCCATGATCGAGTGGTCATTTGTTTGTGATCCGACCGAGGGCAGGAAAATGGAAGACGTTCAATCCTTTGGTGAATCTTCTCTTCAATCTATAGCAAAGAAGATCGAGCATGTTCTTACCATTTTAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

160

Amino Acids

18.01

Weight (kDa)

5.82

Isoelectric Point (pI)

39.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc2 PF10604 13 - 152 1.2e-18 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis pycom17g23320
rosa_chinensis RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 222
AccI GTMKAC 1 cut(s) 212
AclWI GGATC 1 cut(s) 374
AcoI YGGCCR 2 cut(s) 55, 157
AfiI CCNNNNNNNGG 6 cut(s) 145, 222, 234, 341, 389, 393
AflII CTTAAG 1 cut(s) 268
AflIII ACRYGT 1 cut(s) 131
AgsI TTSAA 2 cut(s) 413, 437
AluBI AGCT 1 cut(s) 273
AluI AGCT 1 cut(s) 273
Alw26I GTCTC 1 cut(s) 122
AlwI GGATC 1 cut(s) 374
AoxI GGCC 4 cut(s) 55, 77, 157, 225
ApeKI GCWGC 1 cut(s) 62
Asp700I GAANNNNTTC 1 cut(s) 408
AspLEI GCGC 1 cut(s) 185
AspS9I GGNCC 1 cut(s) 225
AsuHPI GGTGA 2 cut(s) 61, 434
BalI TGGCCA 1 cut(s) 57
BbsI GAAGAC 1 cut(s) 411
BbvCI CCTCAGC 1 cut(s) 45
BbvI GCAGC 1 cut(s) 74
BccI CCATC 2 cut(s) 224, 341
BceAI ACGGC 1 cut(s) 358
BcoDI GTCTC 1 cut(s) 122
BfaI CTAG 2 cut(s) 143, 170
BfmI CTRYAG 1 cut(s) 441
BfrI CTTAAG 1 cut(s) 268
BglI GCCNNNNNGGC 1 cut(s) 25
BisI GCNGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 64
BmgT120I GGNCC 1 cut(s) 225
BmiI GGNNCC 1 cut(s) 352
BpiI GAAGAC 1 cut(s) 411
Bpu10I CCTNAGC 1 cut(s) 45
BsaAI YACGTR 1 cut(s) 313
BsaJI CCNNGG 1 cut(s) 387
Bsc4I CCNNNNNNNGG 6 cut(s) 145, 222, 234, 341, 389, 393
Bse118I RCCGGY 1 cut(s) 155
Bse1I ACTGG 1 cut(s) 169
BseDI CCNNGG 1 cut(s) 387
BseLI CCNNNNNNNGG 6 cut(s) 145, 222, 234, 341, 389, 393
BseMII CTCAG 1 cut(s) 36
BseNI ACTGG 1 cut(s) 169
BseXI GCAGC 1 cut(s) 74
Bsh1285I CGRYCG 1 cut(s) 387
BshFI GGCC 4 cut(s) 57, 79, 159, 227
BsiEI CGRYCG 1 cut(s) 387
BsiSI CCGG 2 cut(s) 156, 186
BslI CCNNNNNNNGG 6 cut(s) 145, 222, 234, 341, 389, 393
BsmAI GTCTC 1 cut(s) 122
BsnI GGCC 4 cut(s) 57, 79, 159, 227
Bsp143I GATC 4 cut(s) 246, 357, 379, 453
BspANI GGCC 4 cut(s) 57, 79, 159, 227
BspCNI CTCAG 1 cut(s) 37
BspLI GGNNCC 1 cut(s) 352
BspPI GGATC 1 cut(s) 374
BspTI CTTAAG 1 cut(s) 268
BsrFI RCCGGY 1 cut(s) 155
BsrI ACTGG 1 cut(s) 169
BssAI RCCGGY 1 cut(s) 155
BssECI CCNNGG 1 cut(s) 387
BssMI GATC 4 cut(s) 246, 357, 379, 453
Bst4CI ACNGT 1 cut(s) 264
Bst6I CTCTTC 1 cut(s) 438
BstAFI CTTAAG 1 cut(s) 268
BstBAI YACGTR 1 cut(s) 313
BstC8I GCNNGC 2 cut(s) 157, 196
BstDEI CTNAG 1 cut(s) 45
BstHHI GCGC 1 cut(s) 185
BstKTI GATC 4 cut(s) 249, 360, 382, 456
BstMAI GTCTC 1 cut(s) 122
BstMBI GATC 4 cut(s) 246, 357, 379, 453
BstMCI CGRYCG 1 cut(s) 387
BstMWI GCNNNNNNNGC 2 cut(s) 25, 191
BstNSI RCATGY 3 cut(s) 135, 329, 464
BstSFI CTRYAG 1 cut(s) 441
BstSNI TACGTA 1 cut(s) 313
BstV1I GCAGC 1 cut(s) 74
BstV2I GAAGAC 1 cut(s) 411
BsuRI GGCC 4 cut(s) 57, 79, 159, 227
BtgZI GCGATG 1 cut(s) 360
Cac8I GCNNGC 2 cut(s) 157, 196
CfoI GCGC 1 cut(s) 185
Cfr10I RCCGGY 1 cut(s) 155
Cfr13I GGNCC 1 cut(s) 225
CspCI CAANNNNNGTGG 2 cut(s) 56, 91
CviAII CATG 6 cut(s) 59, 132, 295, 326, 355, 461
CviJI RGCY 8 cut(s) 19, 57, 79, 89, 159, 227, 238, 273
CviKI_1 RGCY 8 cut(s) 19, 57, 79, 89, 159, 227, 238, 273
DdeI CTNAG 1 cut(s) 45
DpnI GATC 4 cut(s) 248, 359, 381, 455
DpnII GATC 4 cut(s) 246, 357, 379, 453
DraI TTTAAA 1 cut(s) 477
EaeI YGGCCR 2 cut(s) 55, 157
Eam1104I CTCTTC 1 cut(s) 438
EarI CTCTTC 1 cut(s) 438
Eco105I TACGTA 1 cut(s) 313
EcoT22I ATGCAT 1 cut(s) 327
FaeI CATG 6 cut(s) 62, 135, 298, 329, 358, 464
FaiI YATR 8 cut(s) 60, 133, 296, 310, 327, 356, 443, 462
FatI CATG 6 cut(s) 58, 131, 294, 325, 354, 460
FblI GTMKAC 1 cut(s) 212
Fnu4HI GCNGC 1 cut(s) 63
Fsp4HI GCNGC 1 cut(s) 63
FspBI CTAG 2 cut(s) 143, 170
GlaI GCGC 1 cut(s) 184
GluI GCNGC 1 cut(s) 63
HaeIII GGCC 4 cut(s) 57, 79, 159, 227
HapII CCGG 2 cut(s) 156, 186
HhaI GCGC 1 cut(s) 185
Hin1II CATG 6 cut(s) 62, 135, 298, 329, 358, 464
Hin6I GCGC 1 cut(s) 183
HinP1I GCGC 1 cut(s) 183
HincII GTYRAC 1 cut(s) 213
HindII GTYRAC 1 cut(s) 213
HinfI GANTC 3 cut(s) 150, 209, 425
HpaII CCGG 2 cut(s) 156, 186
HphI GGTGA 2 cut(s) 61, 434
Hpy166II GTNNAC 1 cut(s) 213
Hpy188I TCNGA 2 cut(s) 336, 384
Hpy188III TCNNGA 2 cut(s) 127, 203
Hpy8I GTNNAC 1 cut(s) 213
HpyCH4III ACNGT 1 cut(s) 264
HpyCH4IV ACGT 2 cut(s) 312, 408
HpyCH4V TGCA 3 cut(s) 62, 99, 325
HpyF10VI GCNNNNNNNGC 2 cut(s) 25, 191
HpyF3I CTNAG 1 cut(s) 45
HpySE526I ACGT 2 cut(s) 312, 408
Hsp92II CATG 6 cut(s) 62, 135, 298, 329, 358, 464
HspAI GCGC 1 cut(s) 183
KroI GCCGGC 1 cut(s) 155
KroNI GCCGGC 1 cut(s) 157
Kzo9I GATC 4 cut(s) 246, 357, 379, 453
LpnPI CCDG 4 cut(s) 150, 169, 199, 379
Lsp1109I GCAGC 1 cut(s) 74
MaeI CTAG 2 cut(s) 143, 170
MaeII ACGT 2 cut(s) 312, 408
MaeIII GTNAC 3 cut(s) 134, 203, 290
MalI GATC 4 cut(s) 248, 359, 381, 455
MboI GATC 4 cut(s) 246, 357, 379, 453
MboII GAAGA 5 cut(s) 17, 416, 420, 425, 463
MlsI TGGCCA 1 cut(s) 57
MluNI TGGCCA 1 cut(s) 57
MlyI GAGTC 1 cut(s) 218
MmeI TCCRAC 1 cut(s) 407
MnlI CCTC 9 cut(s) 23, 40, 49, 64, 90, 139, 228, 271, 382
Mox20I TGGCCA 1 cut(s) 57
Mph1103I ATGCAT 1 cut(s) 327
MroNI GCCGGC 1 cut(s) 155
MroXI GAANNNNTTC 1 cut(s) 408
MscI TGGCCA 1 cut(s) 57
MseI TTAA 3 cut(s) 269, 303, 476
Msp20I TGGCCA 1 cut(s) 57
MspCI CTTAAG 1 cut(s) 268
MspI CCGG 2 cut(s) 156, 186
MwoI GCNNNNNNNGC 2 cut(s) 25, 191
NaeI GCCGGC 1 cut(s) 157
NdeII GATC 4 cut(s) 246, 357, 379, 453
NgoMIV GCCGGC 1 cut(s) 155
NlaIII CATG 6 cut(s) 62, 135, 298, 329, 358, 464
NlaIV GGNNCC 1 cut(s) 352
NmuCI GTSAC 1 cut(s) 203
NsiI ATGCAT 1 cut(s) 327
NspI RCATGY 3 cut(s) 135, 329, 464
PciI ACATGT 1 cut(s) 131
PdiI GCCGGC 1 cut(s) 157
PdmI GAANNNNTTC 1 cut(s) 408
PfeI GAWTC 2 cut(s) 150, 425
PflMI CCANNNNNTGG 1 cut(s) 222
PkrI GCNGC 1 cut(s) 64
PleI GAGTC 1 cut(s) 217
PpsI GAGTC 1 cut(s) 217
Ppu21I YACGTR 1 cut(s) 313
PscI ACATGT 1 cut(s) 131
PspN4I GGNNCC 1 cut(s) 352
PspPI GGNCC 1 cut(s) 225
SalI GTCGAC 1 cut(s) 211
SaqAI TTAA 3 cut(s) 269, 303, 476
SatI GCNGC 1 cut(s) 63
Sau3AI GATC 4 cut(s) 246, 357, 379, 453
Sau96I GGNCC 1 cut(s) 225
SchI GAGTC 1 cut(s) 218
SetI ASST 7 cut(s) 51, 75, 105, 275, 282, 315, 411
SfcI CTRYAG 1 cut(s) 441
SmlI CTYRAG 1 cut(s) 268
SmoI CTYRAG 1 cut(s) 268
SnaBI TACGTA 1 cut(s) 313
SspMI CTAG 2 cut(s) 143, 170
TaaI ACNGT 1 cut(s) 264
TaiI ACGT 2 cut(s) 315, 411
TaqI TCGA 6 cut(s) 126, 175, 212, 249, 360, 456
TaqII GACCGA 1 cut(s) 401
TfiI GAWTC 2 cut(s) 150, 425
Tru1I TTAA 3 cut(s) 269, 303, 476
Tru9I TTAA 3 cut(s) 269, 303, 476
TseFI GTSAC 1 cut(s) 203
TseI GCWGC 1 cut(s) 62
Tsp45I GTSAC 1 cut(s) 203
Van91I CCANNNNNTGG 1 cut(s) 222
Vha464I CTTAAG 1 cut(s) 268
XceI RCATGY 3 cut(s) 135, 329, 464
XmiI GTMKAC 1 cut(s) 212
XmnI GAANNNNTTC 1 cut(s) 408
XspI CTAG 2 cut(s) 143, 170
Zsp2I ATGCAT 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.