RLG00000030613

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000369
Physical Location & Seq
Reverse (-)
64445727 .. 64446818
1092 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030613

Sequence Viewer

Length: 1092 bp
ATGGGAACCCAAAGAAGCTCCTACTCTTTGGATGAAGATCTCATAGTAGAAATTCTGTCCAGATTACCTGTGAAGTCTCTGATGAGGTTTAGCTGCGTGTCAAAAGAGTGGTATTCTCTCACCAGAAACTCTTACTTGATCAATATTCACCTTCGTCGCGCCAATTCGAATCTGTCTCTTCTCACTCATGAATATGATCGTGATAAGCGGTTCAATCCAAAGTTTGGAATCTCAATGCTTGGAGATGAAGCAGCAGACCTTGTGAGTATAGATTTACCTATCTTGTCGAACTCTTCCAAGTTTACAAACATTGTCGGATCTAGTAATGGTTTAGTATGTCTTGTAGCTAGGGTGAAAAAGAAAAGACGAAAGTTTATGGATACTGCAGAAATAATAATATGGAACCCAGCAACAAAACAGTTTCGAAGTCTTCCTAAACCTGTACTTGAGGAAAATTTCCATCGTTTTGATCGTCCTACACTTGGTTTTGGATTTAGTGACGATAACACCGATGATTACAAATTAGTTAATATTTTCCATAAGCAAGTACAAGTCTTCACCCGAAGTACAAATTCATGGAGAGAAGTCGAAGGCAAAGGGTATCCATCATGTAAATATTGTTACGGAGATTTTTGGGTTTCGTTGAAGGGAGTGCTGTATTGGTCGGCATGGACCGATAGATCGAAGGGCCGTTTTGTTTTGTCTTTCAATCTGCGTGATGAGGTATTTCATGTCATACAATTACCATCCGGGAGTGATTGGAGACTGCTTCTGTGGAAAAACTCACTAGCAATCGTGAGCAAGAATCAGGTTTGGGCGGCGAAGACCGATGACTCTGATGAGAGTGGTGACAATAACAAAATCGTTTGGACCAAACAATTTAGCATTGATTTTTCAATATCACGATGTGAAGAGGTCTTTGGAATTTGGAAGGATCAAGTACTAATTCGAAGACAGTTAAGATATGATAGGCTTTATTTGTATGACCCTATAACCAAGGAAAGGGGAAACTTGCTTCGGAAACCTGATGAAAAGAACTATTATGGTTATGGTCAACTAGTCAATTATGTGGAGAGCCTAGCTTTAGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

364

Amino Acids

42.38

Weight (kDa)

9.21

Isoelectric Point (pI)

37.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 9 - 46 5.4e-10 F-box domain
F-box-like PF12937 13 - 46 2e-06 F-box-like
FBA_3 PF08268 97 - 269 4.2e-21 F-box associated beta propeller domain
FBA_1 PF07734 127 - 360 4.9e-18 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis pycom17g23320
rosa_chinensis RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 224
AccII CGCG 1 cut(s) 159
AciI CCGC 2 cut(s) 208, 818
AclWI GGATC 2 cut(s) 325, 942
AcsI RAATTY 4 cut(s) 51, 454, 571, 924
AdeI CACNNNGTG 1 cut(s) 908
AfaI GTAC 4 cut(s) 444, 549, 568, 942
AfiI CCNNNNNNNGG 3 cut(s) 224, 482, 1002
AgsI TTSAA 4 cut(s) 214, 646, 709, 897
AhlI ACTAGT 1 cut(s) 1057
AjuI GAANNNNNNNTTGG 2 cut(s) 903, 935
AluBI AGCT 4 cut(s) 18, 93, 347, 1082
AluI AGCT 4 cut(s) 18, 93, 347, 1082
Alw26I GTCTC 3 cut(s) 81, 180, 757
AlwI GGATC 2 cut(s) 325, 942
AoxI GGCC 1 cut(s) 688
ApeKI GCWGC 2 cut(s) 93, 251
ApoI RAATTY 4 cut(s) 51, 454, 571, 924
AspLEI GCGC 1 cut(s) 161
AspS9I GGNCC 3 cut(s) 672, 688, 870
AsuC2I CCSGG 1 cut(s) 751
AsuHPI GGTGA 5 cut(s) 112, 140, 364, 550, 860
AsuII TTCGAA 3 cut(s) 167, 424, 949
AvaII GGWCC 2 cut(s) 672, 870
BbsI GAAGAC 4 cut(s) 422, 547, 830, 958
BbvI GCAGC 2 cut(s) 80, 263
BccI CCATC 3 cut(s) 468, 613, 754
BceAI ACGGC 1 cut(s) 675
BciVI GTATCC 2 cut(s) 373, 612
BclI TGATCA 1 cut(s) 138
BcnI CCSGG 1 cut(s) 751
BcoDI GTCTC 3 cut(s) 81, 180, 757
BcuI ACTAGT 1 cut(s) 1057
BfaI CTAG 5 cut(s) 321, 348, 788, 1058, 1079
BfmI CTRYAG 1 cut(s) 384
BfuI GTATCC 2 cut(s) 373, 612
BglII AGATCT 1 cut(s) 37
BisI GCNGC 3 cut(s) 94, 252, 819
BlsI GCNGC 3 cut(s) 95, 253, 820
BmcAI AGTACT 1 cut(s) 942
Bme1390I CCNGG 1 cut(s) 751
Bme18I GGWCC 2 cut(s) 672, 870
BmgT120I GGNCC 3 cut(s) 672, 688, 870
BmiI GGNNCC 2 cut(s) 7, 404
BmrFI CCNGG 1 cut(s) 751
BpiI GAAGAC 4 cut(s) 422, 547, 830, 958
Bpu14I TTCGAA 3 cut(s) 167, 424, 949
BpuEI CTTGAG 1 cut(s) 467
BpuMI CCSGG 1 cut(s) 751
BsaBI GATNNNNATC 1 cut(s) 36
BsaJI CCNNGG 1 cut(s) 996
Bsc4I CCNNNNNNNGG 3 cut(s) 224, 482, 1002
Bse8I GATNNNNATC 1 cut(s) 36
BseDI CCNNGG 1 cut(s) 996
BseGI GGATG 2 cut(s) 37, 746
BseJI GATNNNNATC 1 cut(s) 36
BseLI CCNNNNNNNGG 3 cut(s) 224, 482, 1002
BseXI GCAGC 2 cut(s) 80, 263
BseYI CCCAGC 1 cut(s) 406
Bsh1236I CGCG 1 cut(s) 159
BshFI GGCC 1 cut(s) 690
BsiSI CCGG 1 cut(s) 750
BslI CCNNNNNNNGG 3 cut(s) 224, 482, 1002
BsmAI GTCTC 3 cut(s) 81, 180, 757
BsnI GGCC 1 cut(s) 690
Bsp119I TTCGAA 3 cut(s) 167, 424, 949
Bsp143I GATC 7 cut(s) 37, 138, 196, 317, 469, 680, 934
BspACI CCGC 2 cut(s) 208, 818
BspANI GGCC 1 cut(s) 690
BspFNI CGCG 1 cut(s) 159
BspHI TCATGA 1 cut(s) 187
BspLI GGNNCC 2 cut(s) 7, 404
BspMAI CTGCAG 1 cut(s) 388
BspPI GGATC 2 cut(s) 325, 942
BspT104I TTCGAA 3 cut(s) 167, 424, 949
BssECI CCNNGG 1 cut(s) 996
BssMI GATC 7 cut(s) 37, 138, 196, 317, 469, 680, 934
BssT1I CCWWGG 1 cut(s) 996
Bst4CI ACNGT 2 cut(s) 420, 957
Bst6I CTCTTC 3 cut(s) 183, 298, 906
BstBI TTCGAA 3 cut(s) 167, 424, 949
BstF5I GGATG 2 cut(s) 37, 746
BstFNI CGCG 1 cut(s) 159
BstHHI GCGC 1 cut(s) 161
BstKTI GATC 7 cut(s) 40, 141, 199, 320, 472, 683, 937
BstMAI GTCTC 3 cut(s) 81, 180, 757
BstMBI GATC 7 cut(s) 37, 138, 196, 317, 469, 680, 934
BstSCI CCNGG 1 cut(s) 749
BstSFI CTRYAG 1 cut(s) 384
BstUI CGCG 1 cut(s) 159
BstV1I GCAGC 2 cut(s) 80, 263
BstV2I GAAGAC 4 cut(s) 422, 547, 830, 958
BstX2I RGATCY 2 cut(s) 37, 317
BstYI RGATCY 2 cut(s) 37, 317
BsuI GTATCC 2 cut(s) 373, 612
BsuRI GGCC 1 cut(s) 690
BtsCI GGATG 2 cut(s) 37, 746
CciI TCATGA 1 cut(s) 187
CfoI GCGC 1 cut(s) 161
Cfr13I GGNCC 3 cut(s) 672, 688, 870
Csp6I GTAC 4 cut(s) 443, 548, 567, 941
CviAII CATG 5 cut(s) 188, 576, 609, 669, 731
CviJI RGCY 7 cut(s) 18, 93, 347, 690, 973, 1077, 1082
CviKI_1 RGCY 7 cut(s) 18, 93, 347, 690, 973, 1077, 1082
CviQI GTAC 4 cut(s) 443, 548, 567, 941
DpnI GATC 7 cut(s) 39, 140, 198, 319, 471, 682, 936
DpnII GATC 7 cut(s) 37, 138, 196, 317, 469, 680, 934
DraIII CACNNNGTG 1 cut(s) 908
Eam1104I CTCTTC 3 cut(s) 183, 298, 906
EarI CTCTTC 3 cut(s) 183, 298, 906
Eco130I CCWWGG 1 cut(s) 996
Eco47I GGWCC 2 cut(s) 672, 870
EcoT14I CCWWGG 1 cut(s) 996
ErhI CCWWGG 1 cut(s) 996
FaeI CATG 5 cut(s) 191, 579, 612, 672, 734
FatI CATG 5 cut(s) 187, 575, 608, 668, 730
FbaI TGATCA 1 cut(s) 138
Fnu4HI GCNGC 3 cut(s) 94, 252, 819
FokI GGATG 2 cut(s) 44, 733
Fsp4HI GCNGC 3 cut(s) 94, 252, 819
FspBI CTAG 5 cut(s) 321, 348, 788, 1058, 1079
GlaI GCGC 1 cut(s) 160
GluI GCNGC 3 cut(s) 94, 252, 819
GsaI CCCAGC 1 cut(s) 410
HaeIII GGCC 1 cut(s) 690
HapII CCGG 1 cut(s) 750
HhaI GCGC 1 cut(s) 161
Hin1II CATG 5 cut(s) 191, 579, 612, 672, 734
Hin6I GCGC 1 cut(s) 159
HinP1I GCGC 1 cut(s) 159
HincII GTYRAC 1 cut(s) 1055
HindII GTYRAC 1 cut(s) 1055
HinfI GANTC 4 cut(s) 169, 228, 805, 833
HpaII CCGG 1 cut(s) 750
HphI GGTGA 5 cut(s) 112, 140, 364, 550, 860
Hpy166II GTNNAC 2 cut(s) 303, 1055
Hpy188I TCNGA 4 cut(s) 81, 317, 838, 1020
Hpy188III TCNNGA 5 cut(s) 60, 188, 200, 796, 903
Hpy8I GTNNAC 2 cut(s) 303, 1055
Hpy99I CGWCG 1 cut(s) 159
HpyAV CCTTC 5 cut(s) 161, 584, 640, 679, 925
HpyCH4III ACNGT 2 cut(s) 420, 957
HpyCH4V TGCA 1 cut(s) 386
Hsp92II CATG 5 cut(s) 191, 579, 612, 672, 734
HspAI GCGC 1 cut(s) 159
Ksp22I TGATCA 1 cut(s) 138
Kzo9I GATC 7 cut(s) 37, 138, 196, 317, 469, 680, 934
LmnI GCTCC 1 cut(s) 23
LpnPI CCDG 8 cut(s) 73, 81, 136, 420, 453, 763, 794, 1038
Lsp1109I GCAGC 2 cut(s) 80, 263
MaeI CTAG 5 cut(s) 321, 348, 788, 1058, 1079
MaeIII GTNAC 3 cut(s) 497, 620, 848
MalI GATC 7 cut(s) 39, 140, 198, 319, 471, 682, 936
MboI GATC 7 cut(s) 37, 138, 196, 317, 469, 680, 934
MboII GAAGA 8 cut(s) 47, 170, 285, 422, 547, 835, 923, 963
MflI RGATCY 2 cut(s) 37, 317
MlyI GAGTC 1 cut(s) 827
MmeI TCCRAC 1 cut(s) 295
MnlI CCTC 4 cut(s) 78, 442, 715, 907
MseI TTAA 2 cut(s) 528, 959
MslI CAYNNNNRTG 1 cut(s) 192
MspI CCGG 1 cut(s) 750
MspR9I CCNGG 1 cut(s) 751
MvnI CGCG 1 cut(s) 159
NciI CCSGG 1 cut(s) 751
NdeII GATC 7 cut(s) 37, 138, 196, 317, 469, 680, 934
NlaIII CATG 5 cut(s) 191, 579, 612, 672, 734
NlaIV GGNNCC 2 cut(s) 7, 404
NmuCI GTSAC 2 cut(s) 497, 848
NspV TTCGAA 3 cut(s) 167, 424, 949
PagI TCATGA 1 cut(s) 187
PcsI WCGNNNNNNNCGW 2 cut(s) 469, 507
PfeI GAWTC 3 cut(s) 169, 228, 805
PflMI CCANNNNNTGG 1 cut(s) 224
PfoI TCCNGGA 1 cut(s) 749
PkrI GCNGC 3 cut(s) 95, 253, 820
PleI GAGTC 1 cut(s) 827
PpsI GAGTC 1 cut(s) 827
PspFI CCCAGC 1 cut(s) 406
PspN4I GGNNCC 2 cut(s) 7, 404
PspPI GGNCC 3 cut(s) 672, 688, 870
PstI CTGCAG 1 cut(s) 388
PsuI RGATCY 2 cut(s) 37, 317
RsaI GTAC 4 cut(s) 444, 549, 568, 942
RsaNI GTAC 4 cut(s) 443, 548, 567, 941
RseI CAYNNNNRTG 1 cut(s) 192
SaqAI TTAA 2 cut(s) 528, 959
SatI GCNGC 3 cut(s) 94, 252, 819
Sau3AI GATC 7 cut(s) 37, 138, 196, 317, 469, 680, 934
Sau96I GGNCC 3 cut(s) 672, 688, 870
ScaI AGTACT 1 cut(s) 942
SchI GAGTC 1 cut(s) 827
ScrFI CCNGG 1 cut(s) 751
SfcI CTRYAG 1 cut(s) 384
SfuI TTCGAA 3 cut(s) 167, 424, 949
SinI GGWCC 2 cut(s) 672, 870
SmiMI CAYNNNNRTG 1 cut(s) 192
SmlI CTYRAG 1 cut(s) 446
SmoI CTYRAG 1 cut(s) 446
SpeI ACTAGT 1 cut(s) 1057
SsiI CCGC 2 cut(s) 208, 818
SspI AATATT 3 cut(s) 145, 532, 617
SspMI CTAG 5 cut(s) 321, 348, 788, 1058, 1079
StyD4I CCNGG 1 cut(s) 749
StyI CCWWGG 1 cut(s) 996
TaaI ACNGT 2 cut(s) 420, 957
TaqI TCGA 6 cut(s) 167, 287, 424, 588, 683, 949
TaqII GACCGA 2 cut(s) 689, 842
TatI WGTACW 4 cut(s) 442, 547, 566, 940
TauI GCSGC 1 cut(s) 821
TfiI GAWTC 3 cut(s) 169, 228, 805
Tru1I TTAA 2 cut(s) 528, 959
Tru9I TTAA 2 cut(s) 528, 959
TseFI GTSAC 2 cut(s) 497, 848
TseI GCWGC 2 cut(s) 93, 251
Tsp45I GTSAC 2 cut(s) 497, 848
TspDTI ATGAA 6 cut(s) 48, 204, 261, 564, 719, 1044
TspGWI ACGGA 1 cut(s) 639
Van91I CCANNNNNTGG 1 cut(s) 224
VpaK11BI GGWCC 2 cut(s) 672, 870
XapI RAATTY 4 cut(s) 51, 454, 571, 924
XspI CTAG 5 cut(s) 321, 348, 788, 1058, 1079
ZrmI AGTACT 1 cut(s) 942
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.