Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013966.1

Orthogroup ID

OG0000369

Physical Location & Seq

Genomic Coordinates Reverse (-)

6767 .. 7330

Gene Structure 564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013966.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

atgcgtatcaaaagagtggtttgctctcctaaaccaagagtatattctgaagatcaaccgaaattaccttcccaatctttgttactctacggtcagaatattgaaagtggacatcttcatcatcagttctcattgcttggcagaaaattcgacacactttcgagactagagctacctgcatttgtcctggacgagtcgtttgagaagatatatattgtgggacctggtaatggtttagtctgccttcatcttcttggagatggaattcaaacggagttaatcatcgtatggaacccagtaacaaagcaacataagaaacttcccaagccgttgtcttttgaagaggagaataagatgttcgaaccacttgtaggttttggattcattcgggaccatggcatcaatagtaccgattacaaagtggcgaggatttcacgaagcaaaggtcaaggaagacttggttatgtaacccaagtcttcacccgaaatgcaaactcatggagagtaataaagaccgtaacgcatcaggttatctgttttatcaaccgtcttccattactctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0006139 GO:0006351 GO:0006366 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019899 GO:0019904 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0046483 GO:0070063 GO:0071704 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD zf-RING_2

Protein Analysis

187

Amino Acids

21.38

Weight (kDa)

9.64

Isoelectric Point (pI)

38.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000369)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica	MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica	Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis	pycom17g23320
rosa_chinensis	RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata	RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora	Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa	Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha	Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana	Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	184
AcsI	RAATTY	2 cut(s)	146, 264
AcuI	CTGAAG	1 cut(s)	69
AfaI	GTAC	1 cut(s)	409
AfiI	CCNNNNNNNGG	2 cut(s)	230, 371
AgsI	TTSAA	3 cut(s)	104, 269, 341
AjnI	CCWGG	2 cut(s)	186, 223
AjuI	GAANNNNNNNTTGG	2 cut(s)	28, 60
AluBI	AGCT	1 cut(s)	172
AluI	AGCT	1 cut(s)	172
Alw26I	GTCTC	1 cut(s)	157
ApoI	RAATTY	2 cut(s)	146, 264
ArsI	GACNNNNNNTTYG	4 cut(s)	182, 214, 430, 462
AspS9I	GGNCC	2 cut(s)	221, 391
AsuHPI	GGTGA	1 cut(s)	472
AsuII	TTCGAA	1 cut(s)	360
AvaII	GGWCC	2 cut(s)	221, 391
BbsI	GAAGAC	3 cut(s)	460, 469, 542
BccI	CCATC	1 cut(s)	254
BceAI	ACGGC	1 cut(s)	313
BcgI	CGANNNNNNTGC	2 cut(s)	130, 164
BciT130I	CCWGG	2 cut(s)	188, 225
BcoDI	GTCTC	1 cut(s)	157
BfaI	CTAG	1 cut(s)	167
BfuAI	ACCTGC	1 cut(s)	184
Bme1390I	CCNGG	2 cut(s)	188, 225
Bme18I	GGWCC	2 cut(s)	221, 391
BmgT120I	GGNCC	2 cut(s)	221, 391
BmiI	GGNNCC	3 cut(s)	222, 293, 392
BmrFI	CCNGG	2 cut(s)	188, 225
BmrI	ACTGGG	1 cut(s)	290
BmsI	GCATC	2 cut(s)	408, 532
BmuI	ACTGGG	1 cut(s)	290
BpiI	GAAGAC	3 cut(s)	460, 469, 542
Bpu14I	TTCGAA	1 cut(s)	360
BsaJI	CCNNGG	1 cut(s)	394
Bsc4I	CCNNNNNNNGG	2 cut(s)	230, 371
Bse1I	ACTGG	1 cut(s)	296
Bse3DI	GCAATG	1 cut(s)	131
BseBI	CCWGG	2 cut(s)	188, 225
BseDI	CCNNGG	1 cut(s)	394
BseLI	CCNNNNNNNGG	2 cut(s)	230, 371
BseMI	GCAATG	1 cut(s)	131
BseNI	ACTGG	1 cut(s)	296
BseRI	GAGGAG	1 cut(s)	359
BslFI	GGGAC	2 cut(s)	234, 404
BslI	CCNNNNNNNGG	2 cut(s)	230, 371
BsmAI	GTCTC	1 cut(s)	157
BsmFI	GGGAC	2 cut(s)	234, 404
Bsp119I	TTCGAA	1 cut(s)	360
Bsp143I	GATC	1 cut(s)	52
Bsp19I	CCATGG	1 cut(s)	394
BspLI	GGNNCC	3 cut(s)	222, 293, 392
BspMI	ACCTGC	1 cut(s)	184
BspT104I	TTCGAA	1 cut(s)	360
BsrDI	GCAATG	1 cut(s)	131
BsrI	ACTGG	1 cut(s)	296
BssECI	CCNNGG	1 cut(s)	394
BssMI	GATC	1 cut(s)	52
BssT1I	CCWWGG	1 cut(s)	394
Bst2UI	CCWGG	2 cut(s)	188, 225
Bst4CI	ACNGT	3 cut(s)	92, 517, 548
Bst6I	CTCTTC	1 cut(s)	336
BstBI	TTCGAA	1 cut(s)	360
BstDSI	CCRYGG	1 cut(s)	394
BstKTI	GATC	1 cut(s)	55
BstMAI	GTCTC	1 cut(s)	157
BstMBI	GATC	1 cut(s)	52
BstNI	CCWGG	2 cut(s)	188, 225
BstSCI	CCNGG	2 cut(s)	186, 223
BstV2I	GAAGAC	3 cut(s)	460, 469, 542
BtgI	CCRYGG	1 cut(s)	394
BveI	ACCTGC	1 cut(s)	184
Cfr13I	GGNCC	2 cut(s)	221, 391
CsiI	ACCWGGT	1 cut(s)	223
Csp6I	GTAC	1 cut(s)	408
CviAII	CATG	2 cut(s)	395, 498
CviJI	RGCY	2 cut(s)	172, 328
CviKI_1	RGCY	2 cut(s)	172, 328
CviQI	GTAC	1 cut(s)	408
DpnI	GATC	1 cut(s)	54
DpnII	GATC	1 cut(s)	52
Eam1104I	CTCTTC	1 cut(s)	336
EarI	CTCTTC	1 cut(s)	336
Eco130I	CCWWGG	1 cut(s)	394
Eco47I	GGWCC	2 cut(s)	221, 391
Eco57I	CTGAAG	1 cut(s)	69
EcoO109I	RGGNCCY	1 cut(s)	221
EcoRI	GAATTC	1 cut(s)	264
EcoRII	CCWGG	2 cut(s)	186, 223
EcoT14I	CCWWGG	1 cut(s)	394
ErhI	CCWWGG	1 cut(s)	394
FaeI	CATG	2 cut(s)	398, 501
FaiI	YATR	8 cut(s)	43, 211, 213, 289, 312, 396, 465, 499
FalI	AAGNNNNNCTT	2 cut(s)	441, 473
FaqI	GGGAC	2 cut(s)	234, 404
FatI	CATG	2 cut(s)	394, 497
FspBI	CTAG	1 cut(s)	167
Hin1II	CATG	2 cut(s)	398, 501
HinfI	GANTC	2 cut(s)	194, 381
HphI	GGTGA	1 cut(s)	472
Hpy166II	GTNNAC	1 cut(s)	110
Hpy188I	TCNGA	3 cut(s)	49, 96, 563
Hpy188III	TCNNGA	3 cut(s)	162, 389, 435
Hpy8I	GTNNAC	1 cut(s)	110
HpyAV	CCTTC	2 cut(s)	78, 254
HpyCH4III	ACNGT	3 cut(s)	92, 517, 548
HpyCH4V	TGCA	2 cut(s)	179, 491
Hsp92II	CATG	2 cut(s)	398, 501
Kzo9I	GATC	1 cut(s)	52
LpnPI	CCDG	7 cut(s)	173, 189, 200, 210, 237, 309, 512
LweI	GCATC	2 cut(s)	408, 532
MabI	ACCWGGT	1 cut(s)	223
MaeI	CTAG	1 cut(s)	167
MaeIII	GTNAC	4 cut(s)	81, 298, 466, 517
MalI	GATC	1 cut(s)	54
MboI	GATC	1 cut(s)	52
MboII	GAAGA	8 cut(s)	62, 107, 217, 242, 353, 465, 469, 542
MluCI	AATT	3 cut(s)	62, 146, 264
MlyI	GAGTC	1 cut(s)	203
MnlI	CCTC	2 cut(s)	337, 420
MseI	TTAA	1 cut(s)	278
MspR9I	CCNGG	2 cut(s)	188, 225
MvaI	CCWGG	2 cut(s)	188, 225
NcoI	CCATGG	1 cut(s)	394
NdeII	GATC	1 cut(s)	52
NlaIII	CATG	2 cut(s)	398, 501
NlaIV	GGNNCC	3 cut(s)	222, 293, 392
NspV	TTCGAA	1 cut(s)	360
PfeI	GAWTC	1 cut(s)	381
PfoI	TCCNGGA	1 cut(s)	186
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
PpuMI	RGGWCCY	1 cut(s)	221
Psp5II	RGGWCCY	1 cut(s)	221
Psp6I	CCWGG	2 cut(s)	186, 223
PspGI	CCWGG	2 cut(s)	186, 223
PspN4I	GGNNCC	3 cut(s)	222, 293, 392
PspPI	GGNCC	2 cut(s)	221, 391
PspPPI	RGGWCCY	1 cut(s)	221
RsaI	GTAC	1 cut(s)	409
RsaNI	GTAC	1 cut(s)	408
SaqAI	TTAA	1 cut(s)	278
Sau3AI	GATC	1 cut(s)	52
Sau96I	GGNCC	2 cut(s)	221, 391
SchI	GAGTC	1 cut(s)	203
ScrFI	CCNGG	2 cut(s)	188, 225
SetI	ASST	7 cut(s)	70, 174, 178, 226, 376, 448, 531
SexAI	ACCWGGT	1 cut(s)	223
SfaNI	GCATC	2 cut(s)	408, 532
SfuI	TTCGAA	1 cut(s)	360
SinI	GGWCC	2 cut(s)	221, 391
Sse9I	AATT	3 cut(s)	62, 146, 264
SspI	AATATT	1 cut(s)	100
SspMI	CTAG	1 cut(s)	167
StyD4I	CCNGG	2 cut(s)	186, 223
StyI	CCWWGG	1 cut(s)	394
TaaI	ACNGT	3 cut(s)	92, 517, 548
TaqI	TCGA	3 cut(s)	150, 161, 360
TasI	AATT	3 cut(s)	62, 146, 264
TfiI	GAWTC	1 cut(s)	381
Tru1I	TTAA	1 cut(s)	278
Tru9I	TTAA	1 cut(s)	278
TspDTI	ATGAA	3 cut(s)	107, 236, 373
TspGWI	ACGGA	1 cut(s)	287
VpaK11BI	GGWCC	2 cut(s)	221, 391
XapI	RAATTY	2 cut(s)	146, 264
XspI	CTAG	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.