Rmu_sc0005698.1_g000001

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005698.1
OG0000369
Physical Location & Seq
Reverse (-)
1072 .. 4026
2955 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005698.1_g000001.1.cds

Sequence Viewer

Length: 1521 bp
atgggaaccaaaagaagctgctcctctttgggtgaagatctcatggtagaaattctgtccagattacctgtgaagtctctgatgaggtttagctgcgtgtcaaaagagtggtattctctcaccagaaactcttacttgatcaatattcaccttcgtcgcgccaattcgaatctctctcttctcactcatgaatatgatcgtgataagcggttcaatactgatccaaagtttggaatctcaatgcttggagatgaagcagcagaccttgtgagtatagatttacccatcttgtcgaactcttccaagtttacaaacattgtaggatctagtaatggcttagtatgtcttgtagctagggtgaaaaagaaaacacgaaagtttatggatagtgcagaaataataatatggaacccagcaacaaaacagtttcgaagtcttcctaaacctgtacttgaggaaaatttccatcgttttgatcgtcctactcttggttttggatttagtgacgataacaccgatgattacaaattagttaatattttccataagcaagtacaagtcttcacccgaagtacaaattcttggagagaagtcgaaggcaaagggtatccatcatgtaaatattgttatggagatttttgggtttcgttgaagggagtgctgtattggtcggcaatgaccgatagatccaagggccgttttattttgtctttcaatctgcgtgatgaggtatttcatgtcatacaattaccattcgggaatgattggtactctcgacttcttctgtggaaaaactcactagcaatcgtgagcaagaatcaggtttgggtggcgaagaccgatgactctgatgagagtggtgacaataacaaaatcgtttggaccaaacaatttagcattgatttttcaatatcacgatgtgaagaggtctttggaatttggaaggatcaagtactaattcgaagacacttaggaaatgataggctttatttgtatgaccctataaccaaggaaaggggaaagttgcttcggaaacctgatgaaaagaactactatgggcccagcccaactcttgcatggcttccaccgtcttccagtgatccttgccacgccaccacttgcaacaggttgccaccatcaccgccgacgttcccccagcaaggtaatagagaacctaaatcggatccagaagatcccaacgaacccaaatcggatccagaggttctcctgcaacccaaatcggatccagagggccaccagcaacccagatcagatcgggaaggtcctttgcaaccgacaaccacgctctcagcctcaaaccccgccaacaagtaccgagccaccacccaacaacgattgtgtttcctttcaccacttccctcaaattgcagcagaccagattgcacacgattgcggagaccacttcctcggacaacacagatgaagacagcccgtccgaagacacagccagtaggacgcgtcgccggacggaaaggggatgctttttcgctgaaaccctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

506

Amino Acids

57.88

Weight (kDa)

9.4

Isoelectric Point (pI)

48.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis pycom17g23320
rosa_chinensis RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 230
AccII CGCG 2 cut(s) 159, 1479
AciI CCGC 4 cut(s) 208, 1142, 1323, 1414
AcsI RAATTY 4 cut(s) 51, 460, 577, 936
AdeI CACNNNGTG 1 cut(s) 920
AfaI GTAC 6 cut(s) 450, 555, 574, 770, 954, 1334
AfiI CCNNNNNNNGG 4 cut(s) 230, 488, 1014, 1160
AflIII ACRYGT 1 cut(s) 1477
AgsI TTSAA 4 cut(s) 214, 652, 715, 909
AhdI GACNNNNNGTC 1 cut(s) 1452
AjuI GAANNNNNNNTTGG 2 cut(s) 915, 947
AluBI AGCT 3 cut(s) 18, 93, 353
AluI AGCT 3 cut(s) 18, 93, 353
Alw26I GTCTC 2 cut(s) 81, 1411
AoxI GGCC 3 cut(s) 694, 1058, 1252
ApaI GGGCCC 1 cut(s) 1062
ApeKI GCWGC 4 cut(s) 18, 93, 257, 1389
ApoI RAATTY 4 cut(s) 51, 460, 577, 936
AspLEI GCGC 1 cut(s) 161
AspS9I GGNCC 6 cut(s) 694, 882, 1058, 1059, 1252, 1283
AsuHPI GGTGA 8 cut(s) 44, 112, 140, 370, 556, 872, 1131, 1362
AsuII TTCGAA 3 cut(s) 167, 430, 961
AvaII GGWCC 2 cut(s) 882, 1283
BaeGI GKGCMC 1 cut(s) 1062
BamHI GGATCC 3 cut(s) 1183, 1213, 1243
BanII GRGCYC 1 cut(s) 1062
BbsI GAAGAC 7 cut(s) 428, 553, 842, 970, 1083, 1451, 1466
BbvI GCAGC 4 cut(s) 5, 80, 269, 1401
BccI CCATC 4 cut(s) 293, 474, 619, 1144
BceAI ACGGC 1 cut(s) 681
BciVI GTATCC 1 cut(s) 618
BclI TGATCA 1 cut(s) 138
BcoDI GTCTC 2 cut(s) 81, 1411
BfaI CTAG 3 cut(s) 327, 354, 800
BfuI GTATCC 1 cut(s) 618
BglII AGATCT 1 cut(s) 37
BisI GCNGC 4 cut(s) 19, 94, 258, 1390
BlsI GCNGC 4 cut(s) 20, 95, 259, 1391
BmcAI AGTACT 1 cut(s) 954
Bme18I GGWCC 2 cut(s) 882, 1283
BmeRI GACNNNNNGTC 1 cut(s) 1452
BmgT120I GGNCC 6 cut(s) 694, 882, 1058, 1059, 1252, 1283
BmiI GGNNCC 6 cut(s) 7, 410, 1060, 1185, 1215, 1245
BmsI GCATC 1 cut(s) 1489
BpiI GAAGAC 7 cut(s) 428, 553, 842, 970, 1083, 1451, 1466
Bpu14I TTCGAA 3 cut(s) 167, 430, 961
BpuEI CTTGAG 1 cut(s) 473
BsaI GGTCTC 1 cut(s) 1411
BsaJI CCNNGG 3 cut(s) 690, 1008, 1427
Bsc4I CCNNNNNNNGG 4 cut(s) 230, 488, 1014, 1160
Bse1I ACTGG 2 cut(s) 1095, 1469
Bse3DI GCAATG 1 cut(s) 681
BseDI CCNNGG 3 cut(s) 690, 1008, 1427
BseGI GGATG 1 cut(s) 1504
BseLI CCNNNNNNNGG 4 cut(s) 230, 488, 1014, 1160
BseMI GCAATG 1 cut(s) 681
BseMII CTCAG 1 cut(s) 1323
BseNI ACTGG 2 cut(s) 1095, 1469
BseRI GAGGAG 1 cut(s) 13
BseSI GKGCMC 1 cut(s) 1062
BseXI GCAGC 4 cut(s) 5, 80, 269, 1401
BseYI CCCAGC 3 cut(s) 412, 1061, 1155
BsgI GTGCAG 1 cut(s) 411
Bsh1236I CGCG 2 cut(s) 159, 1479
BshFI GGCC 3 cut(s) 696, 1060, 1254
BsiSI CCGG 1 cut(s) 1485
BslI CCNNNNNNNGG 4 cut(s) 230, 488, 1014, 1160
BsmAI GTCTC 2 cut(s) 81, 1411
BsnI GGCC 3 cut(s) 696, 1060, 1254
Bso31I GGTCTC 1 cut(s) 1411
Bsp119I TTCGAA 3 cut(s) 167, 430, 961
Bsp120I GGGCCC 1 cut(s) 1058
Bsp1286I GDGCHC 1 cut(s) 1062
BspACI CCGC 4 cut(s) 208, 1142, 1323, 1414
BspANI GGCC 3 cut(s) 696, 1060, 1254
BspCNI CTCAG 1 cut(s) 1322
BspFNI CGCG 2 cut(s) 159, 1479
BspHI TCATGA 1 cut(s) 187
BspLI GGNNCC 6 cut(s) 7, 410, 1060, 1185, 1215, 1245
BspT104I TTCGAA 3 cut(s) 167, 430, 961
BspTNI GGTCTC 1 cut(s) 1411
BsrDI GCAATG 1 cut(s) 681
BsrI ACTGG 2 cut(s) 1095, 1469
BssECI CCNNGG 3 cut(s) 690, 1008, 1427
BssT1I CCWWGG 2 cut(s) 690, 1008
Bst4CI ACNGT 2 cut(s) 426, 1089
Bst6I CTCTTC 3 cut(s) 183, 304, 918
BstBI TTCGAA 3 cut(s) 167, 430, 961
BstDEI CTNAG 3 cut(s) 337, 970, 1309
BstF5I GGATG 1 cut(s) 1504
BstFNI CGCG 2 cut(s) 159, 1479
BstHHI GCGC 1 cut(s) 161
BstMAI GTCTC 2 cut(s) 81, 1411
BstSLI GKGCMC 1 cut(s) 1062
BstUI CGCG 2 cut(s) 159, 1479
BstV1I GCAGC 4 cut(s) 5, 80, 269, 1401
BstV2I GAAGAC 7 cut(s) 428, 553, 842, 970, 1083, 1451, 1466
BstX2I RGATCY 7 cut(s) 37, 323, 686, 1183, 1192, 1213, 1243
BstYI RGATCY 7 cut(s) 37, 323, 686, 1183, 1192, 1213, 1243
BsuI GTATCC 1 cut(s) 618
BsuRI GGCC 3 cut(s) 696, 1060, 1254
BtsCI GGATG 1 cut(s) 1504
BtsIMutI CAGTG 1 cut(s) 1102
CciI TCATGA 1 cut(s) 187
CfoI GCGC 1 cut(s) 161
Cfr13I GGNCC 6 cut(s) 694, 882, 1058, 1059, 1252, 1283
CseI GACGC 2 cut(s) 1468, 1485
Csp6I GTAC 6 cut(s) 449, 554, 573, 769, 953, 1333
CviAII CATG 5 cut(s) 43, 188, 615, 737, 1077
CviQI GTAC 6 cut(s) 449, 554, 573, 769, 953, 1333
DdeI CTNAG 3 cut(s) 337, 970, 1309
DraIII CACNNNGTG 1 cut(s) 920
DriI GACNNNNNGTC 1 cut(s) 1452
Eam1104I CTCTTC 3 cut(s) 183, 304, 918
Eam1105I GACNNNNNGTC 1 cut(s) 1452
EarI CTCTTC 3 cut(s) 183, 304, 918
Eco130I CCWWGG 2 cut(s) 690, 1008
Eco24I GRGCYC 1 cut(s) 1062
Eco31I GGTCTC 1 cut(s) 1411
Eco47I GGWCC 2 cut(s) 882, 1283
EcoO109I RGGNCCY 1 cut(s) 1283
EcoT14I CCWWGG 2 cut(s) 690, 1008
EcoT38I GRGCYC 1 cut(s) 1062
ErhI CCWWGG 2 cut(s) 690, 1008
FaeI CATG 5 cut(s) 46, 191, 618, 740, 1080
FatI CATG 5 cut(s) 42, 187, 614, 736, 1076
FauI CCCGC 1 cut(s) 1330
FbaI TGATCA 1 cut(s) 138
Fnu4HI GCNGC 4 cut(s) 19, 94, 258, 1390
FokI GGATG 1 cut(s) 1511
FriOI GRGCYC 1 cut(s) 1062
Fsp4HI GCNGC 4 cut(s) 19, 94, 258, 1390
FspBI CTAG 3 cut(s) 327, 354, 800
GlaI GCGC 1 cut(s) 160
GluI GCNGC 4 cut(s) 19, 94, 258, 1390
GsaI CCCAGC 3 cut(s) 416, 1065, 1159
HaeIII GGCC 3 cut(s) 696, 1060, 1254
HapII CCGG 1 cut(s) 1485
HgaI GACGC 2 cut(s) 1468, 1485
HhaI GCGC 1 cut(s) 161
Hin1II CATG 5 cut(s) 46, 191, 618, 740, 1080
Hin6I GCGC 1 cut(s) 159
HinP1I GCGC 1 cut(s) 159
HinfI GANTC 4 cut(s) 169, 234, 817, 845
HpaII CCGG 1 cut(s) 1485
HphI GGTGA 8 cut(s) 44, 112, 140, 370, 556, 872, 1131, 1362
Hpy166II GTNNAC 1 cut(s) 309
Hpy188I TCNGA 9 cut(s) 81, 850, 1032, 1183, 1213, 1243, 1273, 1431, 1458
Hpy8I GTNNAC 1 cut(s) 309
Hpy99I CGWCG 3 cut(s) 159, 1150, 1484
HpyAV CCTTC 5 cut(s) 161, 590, 646, 937, 1274
HpyCH4III ACNGT 2 cut(s) 426, 1089
HpyCH4IV ACGT 1 cut(s) 1148
HpyCH4V TGCA 7 cut(s) 392, 1076, 1122, 1231, 1291, 1389, 1404
HpyF3I CTNAG 3 cut(s) 337, 970, 1309
HpySE526I ACGT 1 cut(s) 1148
Hsp92II CATG 5 cut(s) 46, 191, 618, 740, 1080
HspAI GCGC 1 cut(s) 159
Ksp22I TGATCA 1 cut(s) 138
LmnI GCTCC 1 cut(s) 26
Lsp1109I GCAGC 4 cut(s) 5, 80, 269, 1401
LweI GCATC 1 cut(s) 1489
MaeI CTAG 3 cut(s) 327, 354, 800
MaeII ACGT 1 cut(s) 1148
MaeIII GTNAC 2 cut(s) 503, 860
MflI RGATCY 7 cut(s) 37, 323, 686, 1183, 1192, 1213, 1243
MhlI GDGCHC 1 cut(s) 1062
MluI ACGCGT 1 cut(s) 1477
MlyI GAGTC 1 cut(s) 839
MseI TTAA 1 cut(s) 534
MslI CAYNNNNRTG 1 cut(s) 192
MspI CCGG 1 cut(s) 1485
MvnI CGCG 2 cut(s) 159, 1479
NlaIII CATG 5 cut(s) 46, 191, 618, 740, 1080
NlaIV GGNNCC 6 cut(s) 7, 410, 1060, 1185, 1215, 1245
NmuCI GTSAC 2 cut(s) 503, 860
NspV TTCGAA 3 cut(s) 167, 430, 961
PagI TCATGA 1 cut(s) 187
PcsI WCGNNNNNNNCGW 2 cut(s) 475, 513
PfeI GAWTC 3 cut(s) 169, 234, 817
PflMI CCANNNNNTGG 1 cut(s) 230
PkrI GCNGC 4 cut(s) 20, 95, 259, 1391
PleI GAGTC 1 cut(s) 839
PpsI GAGTC 1 cut(s) 839
PpuMI RGGWCCY 1 cut(s) 1283
Psp5II RGGWCCY 1 cut(s) 1283
PspFI CCCAGC 3 cut(s) 412, 1061, 1155
PspN4I GGNNCC 6 cut(s) 7, 410, 1060, 1185, 1215, 1245
PspOMI GGGCCC 1 cut(s) 1058
PspPI GGNCC 6 cut(s) 694, 882, 1058, 1059, 1252, 1283
PspPPI RGGWCCY 1 cut(s) 1283
PsuI RGATCY 7 cut(s) 37, 323, 686, 1183, 1192, 1213, 1243
RsaI GTAC 6 cut(s) 450, 555, 574, 770, 954, 1334
RsaNI GTAC 6 cut(s) 449, 554, 573, 769, 953, 1333
RseI CAYNNNNRTG 1 cut(s) 192
SaqAI TTAA 1 cut(s) 534
SatI GCNGC 4 cut(s) 19, 94, 258, 1390
Sau96I GGNCC 6 cut(s) 694, 882, 1058, 1059, 1252, 1283
ScaI AGTACT 1 cut(s) 954
SchI GAGTC 1 cut(s) 839
SduI GDGCHC 1 cut(s) 1062
SfaNI GCATC 1 cut(s) 1489
SfuI TTCGAA 3 cut(s) 167, 430, 961
SinI GGWCC 2 cut(s) 882, 1283
SmiMI CAYNNNNRTG 1 cut(s) 192
SmlI CTYRAG 1 cut(s) 452
SmoI CTYRAG 1 cut(s) 452
SsiI CCGC 4 cut(s) 208, 1142, 1323, 1414
SspI AATATT 3 cut(s) 145, 538, 623
SspMI CTAG 3 cut(s) 327, 354, 800
StyI CCWWGG 2 cut(s) 690, 1008
TaaI ACNGT 2 cut(s) 426, 1089
TaiI ACGT 1 cut(s) 1151
TaqI TCGA 6 cut(s) 167, 293, 430, 594, 775, 961
TaqII GACCGA 2 cut(s) 695, 854
TatI WGTACW 4 cut(s) 448, 553, 572, 952
TfiI GAWTC 3 cut(s) 169, 234, 817
Tru1I TTAA 1 cut(s) 534
Tru9I TTAA 1 cut(s) 534
TscAI CASTG 1 cut(s) 1102
TseFI GTSAC 2 cut(s) 503, 860
TseI GCWGC 4 cut(s) 18, 93, 257, 1389
Tsp45I GTSAC 2 cut(s) 503, 860
TspDTI ATGAA 5 cut(s) 204, 267, 725, 1056, 1457
TspGWI ACGGA 1 cut(s) 1504
TspRI CASTG 1 cut(s) 1102
Van91I CCANNNNNTGG 1 cut(s) 230
VpaK11BI GGWCC 2 cut(s) 882, 1283
XapI RAATTY 4 cut(s) 51, 460, 577, 936
XcmI CCANNNNNNNNNTGG 1 cut(s) 1074
XspI CTAG 3 cut(s) 327, 354, 800
ZrmI AGTACT 1 cut(s) 954
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.