FvH4_6g01284

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000369
Physical Location & Seq
Reverse (-)
704891 .. 706105
1215 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g01284.t1

Sequence Viewer

Length: 801 bp
ATGTCACTGCTTGAGGATGATGGGGAAAAAGCTAAATTTACGAGTTTAGATTTACCTTTCTTCAACCATAAAAGCTGGTCCACTGCAAATTATCTGGGATCAAGTAATCGCTTAGTCTGCCTTCTGCTAGAATATGAGAATTGCATTACAAATGAAAGGGAAGATTCAATAGTAGTATGCAACCCAGCGACGAGAGACTTTAGGTATCTTCCTACACCTACTCCTTTTAGGAAGAAGGAAGATTGGCCTCTTCTGTGTTTTGAATTCATGTATGACAGTAGGGAATTCAAATTGGTGAGTATTTTCCCATATGTTTCTGATAATGGATCAGAAAACGGGGTGATGTATTGGGTGGCAAAGGATACTAAATCGAACGAGTACTTTGCTTTGTCTTTCGATATATATGATGAGGTCTTCCATGTGATAGACCTACCGATGCTGCGGGTACCCGAAAATGTTCATCTGAAACACCGACCTTCATTCCTCGTATGGAGAAATTCACTTGCAATGCTACGACCTTCACTACCAACTAGATACTACCAAGTGCTTTGGGTGATGACCAAGAGTGGAACAACATCGACATTTTCTTGGACTCAACAATTCAGGATGCAAACCTCATCAATTCCTTCAGGGCGCGTCATGGGATTTCTGATGGATCAATTACTTCTCAAAGCATGGAAAGAAATCCTTGTTTTGTATGACCCTGAGACTAAGAAAATGAGAAAGATTCCTACACATAGATCAGCCAAAAAGTATTGTCAATTCCATGATTATGTGCAGAGCCTACTTCCAATCCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

267

Amino Acids

31.42

Weight (kDa)

8.48

Isoelectric Point (pI)

36.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 110 - 250 4.5e-06 F-box associated beta propeller domain
FBA_1 PF07734 112 - 265 3.3e-11 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis pycom17g23320
rosa_chinensis RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 445
AccB1I GGYRCC 1 cut(s) 445
AccII CGCG 1 cut(s) 636
AciI CCGC 1 cut(s) 442
AclWI GGATC 3 cut(s) 106, 334, 663
AcsI RAATTY 4 cut(s) 35, 263, 284, 496
AcuI CTGAAG 1 cut(s) 612
AfaI GTAC 2 cut(s) 380, 447
AgsI TTSAA 4 cut(s) 64, 168, 263, 289
AluBI AGCT 2 cut(s) 32, 75
AluI AGCT 2 cut(s) 32, 75
Alw26I GTCTC 2 cut(s) 189, 701
AlwI GGATC 3 cut(s) 106, 334, 663
AoxI GGCC 1 cut(s) 245
ApeKI GCWGC 1 cut(s) 439
ApoI RAATTY 4 cut(s) 35, 263, 284, 496
Asp700I GAANNNNTTC 1 cut(s) 456
Asp718I GGTACC 1 cut(s) 445
AspLEI GCGC 1 cut(s) 636
AspS9I GGNCC 1 cut(s) 78
AsuHPI GGTGA 3 cut(s) 307, 352, 565
AvaII GGWCC 1 cut(s) 78
BanI GGYRCC 1 cut(s) 445
BbsI GAAGAC 1 cut(s) 406
BbvI GCAGC 1 cut(s) 426
BccI CCATC 2 cut(s) 14, 646
BcgI CGANNNNNNTGC 2 cut(s) 365, 399
BciVI GTATCC 1 cut(s) 355
BcoDI GTCTC 2 cut(s) 189, 701
BfaI CTAG 2 cut(s) 128, 531
BfuI GTATCC 1 cut(s) 355
BisI GCNGC 1 cut(s) 440
BlsI GCNGC 1 cut(s) 441
BmcAI AGTACT 1 cut(s) 380
Bme18I GGWCC 1 cut(s) 78
BmgT120I GGNCC 1 cut(s) 78
BmiI GGNNCC 1 cut(s) 447
BmsI GCATC 2 cut(s) 426, 597
BpiI GAAGAC 1 cut(s) 406
BpuEI CTTGAG 1 cut(s) 32
BsaWI WCCGGW 1 cut(s) 795
BsaXI ACNNNNNCTCC 2 cut(s) 205, 235
Bse3DI GCAATG 1 cut(s) 513
BseGI GGATG 2 cut(s) 22, 612
BseMI GCAATG 1 cut(s) 513
BseMII CTCAG 1 cut(s) 696
BseXI GCAGC 1 cut(s) 426
BseYI CCCAGC 1 cut(s) 184
BsgI GTGCAG 1 cut(s) 797
Bsh1236I CGCG 1 cut(s) 636
BshFI GGCC 1 cut(s) 247
BshNI GGYRCC 1 cut(s) 445
BsiSI CCGG 1 cut(s) 796
BsmAI GTCTC 2 cut(s) 189, 701
BsnI GGCC 1 cut(s) 247
Bsp143I GATC 4 cut(s) 98, 326, 655, 740
BspACI CCGC 1 cut(s) 442
BspANI GGCC 1 cut(s) 247
BspCNI CTCAG 1 cut(s) 697
BspFNI CGCG 1 cut(s) 636
BspLI GGNNCC 1 cut(s) 447
BspPI GGATC 3 cut(s) 106, 334, 663
BspT107I GGYRCC 1 cut(s) 445
BsrDI GCAATG 1 cut(s) 513
BssMI GATC 4 cut(s) 98, 326, 655, 740
Bst4CI ACNGT 1 cut(s) 278
Bst6I CTCTTC 1 cut(s) 255
BstDEI CTNAG 3 cut(s) 112, 705, 711
BstF5I GGATG 2 cut(s) 22, 612
BstFNI CGCG 1 cut(s) 636
BstHHI GCGC 1 cut(s) 636
BstKTI GATC 4 cut(s) 101, 329, 658, 743
BstMAI GTCTC 2 cut(s) 189, 701
BstMBI GATC 4 cut(s) 98, 326, 655, 740
BstMWI GCNNNNNNNGC 1 cut(s) 117
BstUI CGCG 1 cut(s) 636
BstV1I GCAGC 1 cut(s) 426
BstV2I GAAGAC 1 cut(s) 406
BsuI GTATCC 1 cut(s) 355
BsuRI GGCC 1 cut(s) 247
BtsCI GGATG 2 cut(s) 22, 612
BtsI GCAGTG 2 cut(s) 5, 81
BtsIMutI CAGTG 2 cut(s) 5, 81
CfoI GCGC 1 cut(s) 636
Cfr13I GGNCC 1 cut(s) 78
CseI GACGC 1 cut(s) 625
Csp6I GTAC 2 cut(s) 379, 446
CviAII CATG 5 cut(s) 268, 419, 640, 675, 767
CviJI RGCY 5 cut(s) 32, 75, 247, 746, 783
CviKI_1 RGCY 5 cut(s) 32, 75, 247, 746, 783
CviQI GTAC 2 cut(s) 379, 446
DdeI CTNAG 3 cut(s) 112, 705, 711
DpnI GATC 4 cut(s) 100, 328, 657, 742
DpnII GATC 4 cut(s) 98, 326, 655, 740
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
Eco47I GGWCC 1 cut(s) 78
Eco57I CTGAAG 1 cut(s) 612
EcoRI GAATTC 2 cut(s) 263, 284
FaeI CATG 5 cut(s) 271, 422, 643, 678, 770
FalI AAGNNNNNCTT 2 cut(s) 672, 704
FatI CATG 5 cut(s) 267, 418, 639, 674, 766
FauI CCCGC 1 cut(s) 435
FauNDI CATATG 1 cut(s) 310
Fnu4HI GCNGC 1 cut(s) 440
FokI GGATG 2 cut(s) 29, 619
Fsp4HI GCNGC 1 cut(s) 440
FspBI CTAG 2 cut(s) 128, 531
GlaI GCGC 1 cut(s) 635
GluI GCNGC 1 cut(s) 440
GsaI CCCAGC 1 cut(s) 188
HaeIII GGCC 1 cut(s) 247
HapII CCGG 1 cut(s) 796
HgaI GACGC 1 cut(s) 625
HhaI GCGC 1 cut(s) 636
Hin1II CATG 5 cut(s) 271, 422, 643, 678, 770
Hin6I GCGC 1 cut(s) 634
HinP1I GCGC 1 cut(s) 634
HinfI GANTC 3 cut(s) 164, 592, 727
HpaII CCGG 1 cut(s) 796
HphI GGTGA 3 cut(s) 307, 352, 565
Hpy166II GTNNAC 1 cut(s) 81
Hpy188I TCNGA 4 cut(s) 319, 331, 465, 651
Hpy188III TCNNGA 1 cut(s) 604
Hpy8I GTNNAC 1 cut(s) 81
Hpy99I CGWCG 1 cut(s) 193
HpyAV CCTTC 5 cut(s) 131, 229, 486, 528, 636
HpyCH4III ACNGT 1 cut(s) 278
HpyCH4V TGCA 6 cut(s) 86, 144, 180, 506, 610, 778
HpyF10VI GCNNNNNNNGC 1 cut(s) 117
HpyF3I CTNAG 3 cut(s) 112, 705, 711
Hsp92II CATG 5 cut(s) 271, 422, 643, 678, 770
HspAI GCGC 1 cut(s) 634
KpnI GGTACC 1 cut(s) 449
Kzo9I GATC 4 cut(s) 98, 326, 655, 740
LpnPI CCDG 6 cut(s) 61, 80, 198, 589, 615, 717
Lsp1109I GCAGC 1 cut(s) 426
LweI GCATC 2 cut(s) 426, 597
MaeI CTAG 2 cut(s) 128, 531
MaeIII GTNAC 1 cut(s) 3
MalI GATC 4 cut(s) 100, 328, 657, 742
MboI GATC 4 cut(s) 98, 326, 655, 740
MboII GAAGA 7 cut(s) 52, 173, 200, 242, 244, 251, 406
MlyI GAGTC 1 cut(s) 586
MnlI CCTC 5 cut(s) 7, 258, 403, 494, 625
MroXI GAANNNNTTC 1 cut(s) 456
MslI CAYNNNNRTG 1 cut(s) 771
MspI CCGG 1 cut(s) 796
MvnI CGCG 1 cut(s) 636
MwoI GCNNNNNNNGC 1 cut(s) 117
NdeI CATATG 1 cut(s) 310
NdeII GATC 4 cut(s) 98, 326, 655, 740
NlaIII CATG 5 cut(s) 271, 422, 643, 678, 770
NlaIV GGNNCC 1 cut(s) 447
NmuCI GTSAC 1 cut(s) 3
PdmI GAANNNNTTC 1 cut(s) 456
PfeI GAWTC 2 cut(s) 164, 727
PkrI GCNGC 1 cut(s) 441
PleI GAGTC 1 cut(s) 586
PpsI GAGTC 1 cut(s) 586
PspFI CCCAGC 1 cut(s) 184
PspN4I GGNNCC 1 cut(s) 447
PspPI GGNCC 1 cut(s) 78
RsaI GTAC 2 cut(s) 380, 447
RsaNI GTAC 2 cut(s) 379, 446
RseI CAYNNNNRTG 1 cut(s) 771
SatI GCNGC 1 cut(s) 440
Sau3AI GATC 4 cut(s) 98, 326, 655, 740
Sau96I GGNCC 1 cut(s) 78
ScaI AGTACT 1 cut(s) 380
SchI GAGTC 1 cut(s) 586
SfaNI GCATC 2 cut(s) 426, 597
SinI GGWCC 1 cut(s) 78
SmiMI CAYNNNNRTG 1 cut(s) 771
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
SsiI CCGC 1 cut(s) 442
SspMI CTAG 2 cut(s) 128, 531
TaaI ACNGT 1 cut(s) 278
TaqI TCGA 3 cut(s) 371, 396, 578
TatI WGTACW 1 cut(s) 378
TfiI GAWTC 2 cut(s) 164, 727
TscAI CASTG 2 cut(s) 12, 88
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 1 cut(s) 439
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 4 cut(s) 168, 256, 449, 468
TspRI CASTG 2 cut(s) 12, 88
VpaK11BI GGWCC 1 cut(s) 78
XapI RAATTY 4 cut(s) 35, 263, 284, 496
XmnI GAANNNNTTC 1 cut(s) 456
XspI CTAG 2 cut(s) 128, 531
ZrmI AGTACT 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.