Rroxscaffold_3G00270190

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000369
Physical Location & Seq
Forward (+)
62804895 .. 62805641
747 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00270190.1

Sequence Viewer

Length: 747 bp
ATGGGAATGGAGGCAGGCGAAGTAGTAAAGGTATCCTCTTCTTTGGCTGATAATCAAGACCTTGTGATAGAAATCCTCTCACAATTACCTATCAAATCTCTAGTTAGGTTTATGTGTGTGTCGCAAGAGTGGTCTGCTCTCATAAAAAGCTCTCGTTTCATTGCAATTCACCAAAAATGCCTTCAACGCTTGAATCCTCCGAATCTCTGTTTACTCTATGGTCACAGTTCCGGAAGTAGATATGCTAAATATCCCAAGCACCATGGGATTTCATTGCTTGGCAAAGACACACATTTGGAGGGATTAGATCTGCCTGAACGTGTCCAGCAAGACTCTTATGATAGGTTGATACTTATTGCGGGATCTAGCAATGGTCTAGTCTGCCTTTGTCCTCTTAACACTCCGAAGGAGATAATCGTCGTGTGGAACCCAGCAACAAGACAGCATAGGTATCTTCCTAAACCATTGCCTTTTAAGGGAAGGAAGGAGACTTCTGATGCACCACTGTTAGGTTTCGTATTCATTAACGACACTGGCAAGTATAATACTGATTACAAAGTCGTGAGGATTTCCCACAGCAAGGATCGTGATGCTGAAGGAAAGTTTACATACCTAACCCAAGTCTTCACCCGAAGTGAAAAGTCATGGAGAGAAGTTAAAAACTGTATTCCACCAGGCGATTATAACTTTGAACCATACTCTTCGATTTCTTCGAATGGTGTGGTGTGTTTGCTTGGCAAGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

248

Amino Acids

27.9

Weight (kDa)

8.88

Isoelectric Point (pI)

33.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 20 - 53 3.9e-08 F-box domain
FBA_3 PF08268 116 - 242 2.1e-09 F-box associated beta propeller domain
FBA_1 PF07734 123 - 240 6e-09 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis pycom17g23320
rosa_chinensis RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 684
AccIII TCCGGA 1 cut(s) 230
AciI CCGC 1 cut(s) 359
AclWI GGATC 2 cut(s) 370, 591
AcuI CTGAAG 1 cut(s) 615
AfiI CCNNNNNNNGG 3 cut(s) 476, 509, 580
AflIII ACRYGT 1 cut(s) 319
AgsI TTSAA 3 cut(s) 185, 193, 692
AjnI CCWGG 1 cut(s) 673
AjuI GAANNNNNNNTTGG 2 cut(s) 165, 197
AluBI AGCT 1 cut(s) 150
AluI AGCT 1 cut(s) 150
Alw26I GTCTC 1 cut(s) 482
AlwI GGATC 2 cut(s) 370, 591
Aor13HI TCCGGA 1 cut(s) 230
AsuHPI GGTGA 2 cut(s) 161, 619
AsuII TTCGAA 1 cut(s) 713
BbsI GAAGAC 1 cut(s) 616
BciT130I CCWGG 1 cut(s) 675
BciVI GTATCC 1 cut(s) 43
BcoDI GTCTC 1 cut(s) 482
BfaI CTAG 3 cut(s) 101, 366, 377
BfuI GTATCC 1 cut(s) 43
BglII AGATCT 1 cut(s) 307
Bme1390I CCNGG 1 cut(s) 675
BmiI GGNNCC 1 cut(s) 428
BmrFI CCNGG 1 cut(s) 675
BmsI GCATC 2 cut(s) 487, 580
BpiI GAAGAC 1 cut(s) 616
Bpu14I TTCGAA 1 cut(s) 713
BsaBI GATNNNNATC 1 cut(s) 71
BsaJI CCNNGG 1 cut(s) 262
BsaWI WCCGGW 1 cut(s) 230
Bsc4I CCNNNNNNNGG 3 cut(s) 476, 509, 580
Bse1I ACTGG 1 cut(s) 538
Bse3DI GCAATG 4 cut(s) 159, 272, 376, 464
Bse8I GATNNNNATC 1 cut(s) 71
BseAI TCCGGA 1 cut(s) 230
BseBI CCWGG 1 cut(s) 675
BseDI CCNNGG 1 cut(s) 262
BseJI GATNNNNATC 1 cut(s) 71
BseLI CCNNNNNNNGG 3 cut(s) 476, 509, 580
BseMI GCAATG 4 cut(s) 159, 272, 376, 464
BseNI ACTGG 1 cut(s) 538
BseYI CCCAGC 1 cut(s) 430
BsiSI CCGG 1 cut(s) 231
BslI CCNNNNNNNGG 3 cut(s) 476, 509, 580
BsmAI GTCTC 1 cut(s) 482
Bsp119I TTCGAA 1 cut(s) 713
Bsp13I TCCGGA 1 cut(s) 230
Bsp143I GATC 3 cut(s) 307, 362, 583
Bsp19I CCATGG 1 cut(s) 262
BspACI CCGC 1 cut(s) 359
BspEI TCCGGA 1 cut(s) 230
BspLI GGNNCC 1 cut(s) 428
BspPI GGATC 2 cut(s) 370, 591
BspT104I TTCGAA 1 cut(s) 713
BsrDI GCAATG 4 cut(s) 159, 272, 376, 464
BsrI ACTGG 1 cut(s) 538
BssECI CCNNGG 1 cut(s) 262
BssMI GATC 3 cut(s) 307, 362, 583
BssT1I CCWWGG 1 cut(s) 262
Bst2UI CCWGG 1 cut(s) 675
Bst4CI ACNGT 3 cut(s) 227, 507, 665
Bst6I CTCTTC 2 cut(s) 43, 706
BstBI TTCGAA 1 cut(s) 713
BstC8I GCNNGC 1 cut(s) 16
BstDSI CCRYGG 1 cut(s) 262
BstKTI GATC 3 cut(s) 310, 365, 586
BstMAI GTCTC 1 cut(s) 482
BstMBI GATC 3 cut(s) 307, 362, 583
BstMWI GCNNNNNNNGC 1 cut(s) 186
BstNI CCWGG 1 cut(s) 675
BstSCI CCNGG 1 cut(s) 673
BstV2I GAAGAC 1 cut(s) 616
BstX2I RGATCY 2 cut(s) 307, 362
BstYI RGATCY 2 cut(s) 307, 362
BsuI GTATCC 1 cut(s) 43
BtgI CCRYGG 1 cut(s) 262
BtsIMutI CAGTG 2 cut(s) 503, 531
Cac8I GCNNGC 1 cut(s) 16
CviAII CATG 2 cut(s) 263, 645
CviJI RGCY 2 cut(s) 47, 150
CviKI_1 RGCY 2 cut(s) 47, 150
DpnI GATC 3 cut(s) 309, 364, 585
DpnII GATC 3 cut(s) 307, 362, 583
Eam1104I CTCTTC 2 cut(s) 43, 706
EarI CTCTTC 2 cut(s) 43, 706
Eco130I CCWWGG 1 cut(s) 262
Eco57I CTGAAG 1 cut(s) 615
EcoRII CCWGG 1 cut(s) 673
EcoT14I CCWWGG 1 cut(s) 262
ErhI CCWWGG 1 cut(s) 262
FaeI CATG 2 cut(s) 266, 648
FatI CATG 2 cut(s) 262, 644
FauI CCCGC 1 cut(s) 352
FspBI CTAG 3 cut(s) 101, 366, 377
GsaI CCCAGC 1 cut(s) 434
HapII CCGG 1 cut(s) 231
Hin1II CATG 2 cut(s) 266, 648
HinfI GANTC 3 cut(s) 193, 202, 332
HpaII CCGG 1 cut(s) 231
HphI GGTGA 2 cut(s) 161, 619
Hpy166II GTNNAC 2 cut(s) 212, 606
Hpy188I TCNGA 3 cut(s) 201, 405, 496
Hpy188III TCNNGA 4 cut(s) 56, 231, 562, 587
Hpy8I GTNNAC 2 cut(s) 212, 606
Hpy99I CGWCG 1 cut(s) 422
HpyAV CCTTC 5 cut(s) 191, 400, 474, 478, 590
HpyCH4III ACNGT 3 cut(s) 227, 507, 665
HpyCH4IV ACGT 1 cut(s) 319
HpyCH4V TGCA 2 cut(s) 164, 500
HpyF10VI GCNNNNNNNGC 1 cut(s) 186
HpySE526I ACGT 1 cut(s) 319
Hsp92II CATG 2 cut(s) 266, 648
Kpn2I TCCGGA 1 cut(s) 230
Kzo9I GATC 3 cut(s) 307, 362, 583
LpnPI CCDG 7 cut(s) 244, 327, 338, 444, 519, 660, 687
LweI GCATC 2 cut(s) 487, 580
MaeI CTAG 3 cut(s) 101, 366, 377
MaeII ACGT 1 cut(s) 319
MaeIII GTNAC 1 cut(s) 221
MalI GATC 3 cut(s) 309, 364, 585
MboI GATC 3 cut(s) 307, 362, 583
MboII GAAGA 5 cut(s) 30, 446, 616, 693, 702
MflI RGATCY 2 cut(s) 307, 362
MluCI AATT 2 cut(s) 83, 165
MlyI GAGTC 1 cut(s) 326
MnlI CCTC 7 cut(s) 4, 46, 86, 207, 292, 402, 558
MroI TCCGGA 1 cut(s) 230
MseI TTAA 4 cut(s) 396, 474, 525, 657
MspI CCGG 1 cut(s) 231
MspR9I CCNGG 1 cut(s) 675
MvaI CCWGG 1 cut(s) 675
MwoI GCNNNNNNNGC 1 cut(s) 186
NcoI CCATGG 1 cut(s) 262
NdeII GATC 3 cut(s) 307, 362, 583
NlaIII CATG 2 cut(s) 266, 648
NlaIV GGNNCC 1 cut(s) 428
NmuCI GTSAC 1 cut(s) 221
NspV TTCGAA 1 cut(s) 713
PcsI WCGNNNNNNNCGW 1 cut(s) 710
PfeI GAWTC 2 cut(s) 193, 202
PleI GAGTC 1 cut(s) 326
PpsI GAGTC 1 cut(s) 326
PsiI TTATAA 1 cut(s) 684
Psp6I CCWGG 1 cut(s) 673
PspFI CCCAGC 1 cut(s) 430
PspGI CCWGG 1 cut(s) 673
PspN4I GGNNCC 1 cut(s) 428
PsuI RGATCY 2 cut(s) 307, 362
SaqAI TTAA 4 cut(s) 396, 474, 525, 657
Sau3AI GATC 3 cut(s) 307, 362, 583
SchI GAGTC 1 cut(s) 326
ScrFI CCNGG 1 cut(s) 675
SfaNI GCATC 2 cut(s) 487, 580
SfuI TTCGAA 1 cut(s) 713
Sse9I AATT 2 cut(s) 83, 165
SsiI CCGC 1 cut(s) 359
SspMI CTAG 3 cut(s) 101, 366, 377
StyD4I CCNGG 1 cut(s) 673
StyI CCWWGG 1 cut(s) 262
TaaI ACNGT 3 cut(s) 227, 507, 665
TaiI ACGT 1 cut(s) 322
TaqI TCGA 2 cut(s) 704, 713
TasI AATT 2 cut(s) 83, 165
TfiI GAWTC 2 cut(s) 193, 202
Tru1I TTAA 4 cut(s) 396, 474, 525, 657
Tru9I TTAA 4 cut(s) 396, 474, 525, 657
TscAI CASTG 2 cut(s) 510, 538
TseFI GTSAC 1 cut(s) 221
Tsp45I GTSAC 1 cut(s) 221
TspDTI ATGAA 3 cut(s) 148, 261, 511
TspRI CASTG 2 cut(s) 510, 538
XspI CTAG 3 cut(s) 101, 366, 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.