Rh1DG047100

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000369
Physical Location & Seq
Reverse (-)
7568689 .. 7570249
1561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG047100.1

Sequence Viewer

Length: 864 bp
ATGCTTGGAGATGAAGCAGCAGACCTTGTGAGTATAGATTTACCCATCTTGTCGAACTCTTCCAAGTTTACAAACATTGTAGGATCTAGTAATGGCTTAGTATGTCTTGTAGCTAGGGTGAAAAAGAAAACACGAAAGTTTATGGATAGTGCAGAAATAATAATATGGAACCCAGCAACAAAACAGTTTCGAAGTCTTCCTAAACCTGTACTTGAGGAAAATTTCCATCGTTTTGATCGTCCTACTCTTGGTTTTGGATTTAGTGATGATAACACCGATGATTACAAATTAGTTAATATTTTCCATAAGCAAGTACAAGTCTTCACCCGAAGTACAAATTCTTGGAGAGAAGTCGAAGGCAAAGGGTATCCATCATGTAAATATTGTTATGGAGATTTTTGGGTTTCGTTGAAGGGAGTGCTGTATTGGTCGGCAATGACCGATAGATCCAAGGGCCGTTTTATTTTGTCTTTCAATCTGCGTGATGAGGTATTTCATGTCATACAATTACCATTCGGGAATGATTGGTACTCTCGACTTCTTCTGTGGAAAAACTCACTAGCAATCGTGAGCAAGAATCAGGTTTGGGTGGCGAAGACCGATGACTCTGATGAGAGTGGTGACAATAACAAAATCGTTTGGACCAAACAATTTAGCATTGATTTTTCAATATCACGATGTGAAGAGGTCTTTGGAATTTGGAAGGATCAAGTACTAATTCGAAGACACTTAGGAAATGATAGGCTTTATTTGTATGACCCTATAACCAAGGAAAGGGGAAAGTTGCTTCGGAAACCTGATGAAAAGAACTATTATGGTTATGGTCAACTAGTCAATTATGTGGAGAGCCTAGCTTTAGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

287

Amino Acids

33.32

Weight (kDa)

8.85

Isoelectric Point (pI)

31.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 19 - 199 1.4e-21 F-box associated beta propeller domain
FBA_1 PF07734 49 - 285 7.2e-22 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis pycom17g23320
rosa_chinensis RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 91, 441, 714
AcsI RAATTY 3 cut(s) 220, 337, 696
AdeI CACNNNGTG 1 cut(s) 680
AfaI GTAC 5 cut(s) 210, 315, 334, 530, 714
AfiI CCNNNNNNNGG 2 cut(s) 248, 774
AgsI TTSAA 3 cut(s) 412, 475, 669
AhlI ACTAGT 1 cut(s) 829
AjuI GAANNNNNNNTTGG 2 cut(s) 675, 707
AluBI AGCT 2 cut(s) 113, 854
AluI AGCT 2 cut(s) 113, 854
AlwI GGATC 3 cut(s) 91, 441, 714
AoxI GGCC 1 cut(s) 454
ApeKI GCWGC 1 cut(s) 17
ApoI RAATTY 3 cut(s) 220, 337, 696
AspS9I GGNCC 2 cut(s) 454, 642
AsuHPI GGTGA 3 cut(s) 130, 316, 632
AsuII TTCGAA 2 cut(s) 190, 721
AvaII GGWCC 1 cut(s) 642
BbsI GAAGAC 4 cut(s) 188, 313, 602, 730
BbvI GCAGC 1 cut(s) 29
BccI CCATC 3 cut(s) 53, 234, 379
BceAI ACGGC 1 cut(s) 441
BciVI GTATCC 1 cut(s) 378
BcuI ACTAGT 1 cut(s) 829
BfaI CTAG 5 cut(s) 87, 114, 560, 830, 851
BfuI GTATCC 1 cut(s) 378
BisI GCNGC 1 cut(s) 18
BlsI GCNGC 1 cut(s) 19
BmcAI AGTACT 1 cut(s) 714
Bme18I GGWCC 1 cut(s) 642
BmgT120I GGNCC 2 cut(s) 454, 642
BmiI GGNNCC 1 cut(s) 170
BpiI GAAGAC 4 cut(s) 188, 313, 602, 730
Bpu14I TTCGAA 2 cut(s) 190, 721
BpuEI CTTGAG 1 cut(s) 233
BsaJI CCNNGG 2 cut(s) 450, 768
Bsc4I CCNNNNNNNGG 2 cut(s) 248, 774
Bse3DI GCAATG 1 cut(s) 441
BseDI CCNNGG 2 cut(s) 450, 768
BseLI CCNNNNNNNGG 2 cut(s) 248, 774
BseMI GCAATG 1 cut(s) 441
BseXI GCAGC 1 cut(s) 29
BseYI CCCAGC 1 cut(s) 172
BsgI GTGCAG 1 cut(s) 171
BshFI GGCC 1 cut(s) 456
BslI CCNNNNNNNGG 2 cut(s) 248, 774
BsnI GGCC 1 cut(s) 456
Bsp119I TTCGAA 2 cut(s) 190, 721
Bsp143I GATC 4 cut(s) 83, 235, 446, 706
BspANI GGCC 1 cut(s) 456
BspLI GGNNCC 1 cut(s) 170
BspPI GGATC 3 cut(s) 91, 441, 714
BspT104I TTCGAA 2 cut(s) 190, 721
BsrDI GCAATG 1 cut(s) 441
BssECI CCNNGG 2 cut(s) 450, 768
BssMI GATC 4 cut(s) 83, 235, 446, 706
BssT1I CCWWGG 2 cut(s) 450, 768
Bst4CI ACNGT 1 cut(s) 186
Bst6I CTCTTC 2 cut(s) 64, 678
BstBI TTCGAA 2 cut(s) 190, 721
BstDEI CTNAG 2 cut(s) 97, 730
BstKTI GATC 4 cut(s) 86, 238, 449, 709
BstMBI GATC 4 cut(s) 83, 235, 446, 706
BstV1I GCAGC 1 cut(s) 29
BstV2I GAAGAC 4 cut(s) 188, 313, 602, 730
BstX2I RGATCY 2 cut(s) 83, 446
BstYI RGATCY 2 cut(s) 83, 446
BsuI GTATCC 1 cut(s) 378
BsuRI GGCC 1 cut(s) 456
Cfr13I GGNCC 2 cut(s) 454, 642
Csp6I GTAC 5 cut(s) 209, 314, 333, 529, 713
CviAII CATG 2 cut(s) 375, 497
CviJI RGCY 6 cut(s) 96, 113, 456, 745, 849, 854
CviKI_1 RGCY 6 cut(s) 96, 113, 456, 745, 849, 854
CviQI GTAC 5 cut(s) 209, 314, 333, 529, 713
DdeI CTNAG 2 cut(s) 97, 730
DpnI GATC 4 cut(s) 85, 237, 448, 708
DpnII GATC 4 cut(s) 83, 235, 446, 706
DraIII CACNNNGTG 1 cut(s) 680
Eam1104I CTCTTC 2 cut(s) 64, 678
EarI CTCTTC 2 cut(s) 64, 678
Eco130I CCWWGG 2 cut(s) 450, 768
Eco47I GGWCC 1 cut(s) 642
EcoT14I CCWWGG 2 cut(s) 450, 768
ErhI CCWWGG 2 cut(s) 450, 768
FaeI CATG 2 cut(s) 378, 500
FatI CATG 2 cut(s) 374, 496
Fnu4HI GCNGC 1 cut(s) 18
Fsp4HI GCNGC 1 cut(s) 18
FspBI CTAG 5 cut(s) 87, 114, 560, 830, 851
GluI GCNGC 1 cut(s) 18
GsaI CCCAGC 1 cut(s) 176
HaeIII GGCC 1 cut(s) 456
Hin1II CATG 2 cut(s) 378, 500
HincII GTYRAC 1 cut(s) 827
HindII GTYRAC 1 cut(s) 827
HinfI GANTC 2 cut(s) 577, 605
HphI GGTGA 3 cut(s) 130, 316, 632
Hpy166II GTNNAC 2 cut(s) 69, 827
Hpy188I TCNGA 2 cut(s) 610, 792
Hpy188III TCNNGA 4 cut(s) 517, 534, 568, 675
Hpy8I GTNNAC 2 cut(s) 69, 827
HpyAV CCTTC 3 cut(s) 350, 406, 697
HpyCH4III ACNGT 1 cut(s) 186
HpyCH4V TGCA 1 cut(s) 152
HpyF3I CTNAG 2 cut(s) 97, 730
Hsp92II CATG 2 cut(s) 378, 500
Kzo9I GATC 4 cut(s) 83, 235, 446, 706
LpnPI CCDG 4 cut(s) 186, 219, 566, 810
Lsp1109I GCAGC 1 cut(s) 29
MaeI CTAG 5 cut(s) 87, 114, 560, 830, 851
MaeIII GTNAC 1 cut(s) 620
MalI GATC 4 cut(s) 85, 237, 448, 708
MboI GATC 4 cut(s) 83, 235, 446, 706
MboII GAAGA 7 cut(s) 51, 188, 313, 533, 607, 695, 735
MflI RGATCY 2 cut(s) 83, 446
MluCI AATT 8 cut(s) 220, 287, 337, 506, 650, 696, 717, 835
MlyI GAGTC 1 cut(s) 599
MnlI CCTC 3 cut(s) 208, 481, 679
MseI TTAA 1 cut(s) 294
NdeII GATC 4 cut(s) 83, 235, 446, 706
NlaIII CATG 2 cut(s) 378, 500
NlaIV GGNNCC 1 cut(s) 170
NmuCI GTSAC 1 cut(s) 620
NspV TTCGAA 2 cut(s) 190, 721
PcsI WCGNNNNNNNCGW 1 cut(s) 235
PfeI GAWTC 1 cut(s) 577
PkrI GCNGC 1 cut(s) 19
PleI GAGTC 1 cut(s) 599
PpsI GAGTC 1 cut(s) 599
PspFI CCCAGC 1 cut(s) 172
PspN4I GGNNCC 1 cut(s) 170
PspPI GGNCC 2 cut(s) 454, 642
PsuI RGATCY 2 cut(s) 83, 446
RsaI GTAC 5 cut(s) 210, 315, 334, 530, 714
RsaNI GTAC 5 cut(s) 209, 314, 333, 529, 713
SaqAI TTAA 1 cut(s) 294
SatI GCNGC 1 cut(s) 18
Sau3AI GATC 4 cut(s) 83, 235, 446, 706
Sau96I GGNCC 2 cut(s) 454, 642
ScaI AGTACT 1 cut(s) 714
SchI GAGTC 1 cut(s) 599
SetI ASST 8 cut(s) 27, 115, 208, 492, 585, 690, 799, 856
SfuI TTCGAA 2 cut(s) 190, 721
SinI GGWCC 1 cut(s) 642
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
SpeI ACTAGT 1 cut(s) 829
Sse9I AATT 8 cut(s) 220, 287, 337, 506, 650, 696, 717, 835
SspI AATATT 2 cut(s) 298, 383
SspMI CTAG 5 cut(s) 87, 114, 560, 830, 851
StyI CCWWGG 2 cut(s) 450, 768
TaaI ACNGT 1 cut(s) 186
TaqI TCGA 5 cut(s) 53, 190, 354, 535, 721
TaqII GACCGA 2 cut(s) 455, 614
TasI AATT 8 cut(s) 220, 287, 337, 506, 650, 696, 717, 835
TatI WGTACW 4 cut(s) 208, 313, 332, 712
TfiI GAWTC 1 cut(s) 577
Tru1I TTAA 1 cut(s) 294
Tru9I TTAA 1 cut(s) 294
TseFI GTSAC 1 cut(s) 620
TseI GCWGC 1 cut(s) 17
Tsp45I GTSAC 1 cut(s) 620
TspDTI ATGAA 3 cut(s) 27, 485, 816
VpaK11BI GGWCC 1 cut(s) 642
XapI RAATTY 3 cut(s) 220, 337, 696
XspI CTAG 5 cut(s) 87, 114, 560, 830, 851
ZrmI AGTACT 1 cut(s) 714
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.