Rh2BG147400

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000369
Physical Location & Seq
Reverse (-)
12698347 .. 12698640
294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG147400.1

Sequence Viewer

Length: 294 bp
ATGAACACAGTTCTTGAGCTTTGGATGATGACTGAGGAGCCTTCTGCTACTACACGAATGCCTTGGGTTAAACAGATTATCCTCAAACCCTCATCACTGTCAAGATATATCTTTGGATCTTGGAAGGATGAATATCTTTTATGGAGAGATACAAATGATGAAGACCTGCATTTTTACGATCCTACGAGCCAGAAATTGAGAAAGCTTCCACAACATGATCAAACACATGGTTACAGATATGATCAAGCAATCAACTATATATGTGGAGAGCCTAGTTTCAGTAGACTGAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

97

Amino Acids

11.65

Weight (kDa)

5.85

Isoelectric Point (pI)

49.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis pycom17g23320
rosa_chinensis RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 174
AccI GTMKAC 1 cut(s) 283
AclWI GGATC 2 cut(s) 124, 173
AluBI AGCT 3 cut(s) 19, 205, 291
AluI AGCT 3 cut(s) 19, 205, 291
AlwI GGATC 2 cut(s) 124, 173
BbsI GAAGAC 1 cut(s) 168
BclI TGATCA 2 cut(s) 217, 241
BfaI CTAG 1 cut(s) 273
BfuAI ACCTGC 1 cut(s) 174
BmiI GGNNCC 1 cut(s) 39
BpiI GAAGAC 1 cut(s) 168
BpuEI CTTGAG 1 cut(s) 35
BsaBI GATNNNNATC 1 cut(s) 132
BsaJI CCNNGG 1 cut(s) 62
Bse8I GATNNNNATC 1 cut(s) 132
BseDI CCNNGG 1 cut(s) 62
BseGI GGATG 2 cut(s) 30, 133
BseJI GATNNNNATC 1 cut(s) 132
BseMII CTCAG 2 cut(s) 24, 278
BseRI GAGGAG 1 cut(s) 50
BsmI GAATGC 1 cut(s) 63
Bsp143I GATC 4 cut(s) 116, 178, 217, 241
BspCNI CTCAG 2 cut(s) 25, 279
BspLI GGNNCC 1 cut(s) 39
BspMI ACCTGC 1 cut(s) 174
BspPI GGATC 2 cut(s) 124, 173
BssECI CCNNGG 1 cut(s) 62
BssMI GATC 4 cut(s) 116, 178, 217, 241
BssT1I CCWWGG 1 cut(s) 62
Bst4CI ACNGT 2 cut(s) 10, 99
BstDEI CTNAG 2 cut(s) 33, 287
BstF5I GGATG 2 cut(s) 30, 133
BstKTI GATC 4 cut(s) 119, 181, 220, 244
BstMBI GATC 4 cut(s) 116, 178, 217, 241
BstV2I GAAGAC 1 cut(s) 168
BstX2I RGATCY 1 cut(s) 116
BstYI RGATCY 1 cut(s) 116
BtsCI GGATG 2 cut(s) 30, 133
BtsIMutI CAGTG 1 cut(s) 95
BveI ACCTGC 1 cut(s) 174
CviAII CATG 2 cut(s) 215, 227
CviJI RGCY 6 cut(s) 19, 40, 189, 205, 271, 291
CviKI_1 RGCY 6 cut(s) 19, 40, 189, 205, 271, 291
DdeI CTNAG 2 cut(s) 33, 287
DpnI GATC 4 cut(s) 118, 180, 219, 243
DpnII GATC 4 cut(s) 116, 178, 217, 241
Eco130I CCWWGG 1 cut(s) 62
EcoT14I CCWWGG 1 cut(s) 62
ErhI CCWWGG 1 cut(s) 62
FaeI CATG 2 cut(s) 218, 230
FaiI YATR 8 cut(s) 108, 142, 216, 228, 240, 258, 260, 262
FatI CATG 2 cut(s) 214, 226
FbaI TGATCA 2 cut(s) 217, 241
FblI GTMKAC 1 cut(s) 283
FokI GGATG 2 cut(s) 37, 140
FspBI CTAG 1 cut(s) 273
Hin1II CATG 2 cut(s) 218, 230
HindIII AAGCTT 1 cut(s) 203
Hpy166II GTNNAC 1 cut(s) 284
Hpy188III TCNNGA 2 cut(s) 14, 102
Hpy8I GTNNAC 1 cut(s) 284
HpyAV CCTTC 2 cut(s) 51, 118
HpyCH4III ACNGT 2 cut(s) 10, 99
HpyCH4V TGCA 1 cut(s) 169
HpyF3I CTNAG 2 cut(s) 33, 287
Hsp92II CATG 2 cut(s) 218, 230
Ksp22I TGATCA 2 cut(s) 217, 241
Kzo9I GATC 4 cut(s) 116, 178, 217, 241
LmnI GCTCC 1 cut(s) 37
LpnPI CCDG 2 cut(s) 179, 203
MaeI CTAG 1 cut(s) 273
MaeIII GTNAC 1 cut(s) 230
MalI GATC 4 cut(s) 118, 180, 219, 243
MboI GATC 4 cut(s) 116, 178, 217, 241
MboII GAAGA 1 cut(s) 173
MflI RGATCY 1 cut(s) 116
MluCI AATT 1 cut(s) 194
MnlI CCTC 3 cut(s) 28, 92, 100
MseI TTAA 1 cut(s) 69
Mva1269I GAATGC 1 cut(s) 63
NdeII GATC 4 cut(s) 116, 178, 217, 241
NlaIII CATG 2 cut(s) 218, 230
NlaIV GGNNCC 1 cut(s) 39
PctI GAATGC 1 cut(s) 63
PspN4I GGNNCC 1 cut(s) 39
PsuI RGATCY 1 cut(s) 116
SaqAI TTAA 1 cut(s) 69
Sau3AI GATC 4 cut(s) 116, 178, 217, 241
SetI ASST 4 cut(s) 21, 168, 207, 293
SmlI CTYRAG 1 cut(s) 14
SmoI CTYRAG 1 cut(s) 14
Sse9I AATT 1 cut(s) 194
SspMI CTAG 1 cut(s) 273
StyI CCWWGG 1 cut(s) 62
TaaI ACNGT 2 cut(s) 10, 99
TasI AATT 1 cut(s) 194
Tru1I TTAA 1 cut(s) 69
Tru9I TTAA 1 cut(s) 69
TscAI CASTG 1 cut(s) 102
TspDTI ATGAA 3 cut(s) 17, 144, 174
TspRI CASTG 1 cut(s) 102
XmiI GTMKAC 1 cut(s) 283
XspI CTAG 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.