Rorug03G0120700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000369
Physical Location & Seq
Reverse (-)
9709282 .. 9712350
3069 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0120700.1

Sequence Viewer

Length: 429 bp
ATGTTCCCAAGGGATGAACAAAAGCCCGGCCAATCTGCAAGATTAATCTCACTGGGTGAAGTAGTGGATTCTAAGGAGAGTATATATCTTCCTCACTCATCTGGGTATAGACAAGAACCGAGGTTCAGGCAACACCTTGCTAAAGAAATGACTCACTATGCTACTGACTGCTGGGATGCTGAGATTGAGACTTCCTGTGGCTGGATTGAGTGCGTCGGTATTGCAGATAGATCTGCATATGACTTGAAGGCTCATTCGGTGCATTTCAGAGGATATCCAGGAAACATATTGATCCCTTGTGAAGGTCAAGATAGCATAAAGTGGAACTTTATCAACTCACTGAAAGAGATTGATGAGAATGATTCAGTAGCTATGCTGAGGGCTGCTGAGGAAGCCTTGGAAGCACAGAAAAAGGTGAGTAGCACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

16.08

Weight (kDa)

5.2

Isoelectric Point (pI)

52.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis pycom17g23320
rosa_chinensis RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 286
AcoI YGGCCR 1 cut(s) 28
AdeI CACNNNGTG 1 cut(s) 56
AfiI CCNNNNNNNGG 2 cut(s) 201, 302
AgsI TTSAA 1 cut(s) 247
AjnI CCWGG 1 cut(s) 277
AluBI AGCT 1 cut(s) 371
AluI AGCT 1 cut(s) 371
Alw26I GTCTC 1 cut(s) 182
AlwI GGATC 1 cut(s) 286
AoxI GGCC 1 cut(s) 28
ApeKI GCWGC 1 cut(s) 383
AseI ATTAAT 1 cut(s) 44
AsuC2I CCSGG 1 cut(s) 27
AsuHPI GGTGA 2 cut(s) 68, 427
BbvCI CCTCAGC 2 cut(s) 377, 387
BbvI GCAGC 1 cut(s) 370
BciT130I CCWGG 1 cut(s) 279
BcnI CCSGG 1 cut(s) 27
BcoDI GTCTC 1 cut(s) 182
BglII AGATCT 1 cut(s) 230
BisI GCNGC 1 cut(s) 384
BlsI GCNGC 1 cut(s) 385
Bme1390I CCNGG 2 cut(s) 27, 279
BmrFI CCNGG 2 cut(s) 27, 279
BmrI ACTGGG 1 cut(s) 62
BmsI GCATC 1 cut(s) 166
BmuI ACTGGG 1 cut(s) 62
Bpu10I CCTNAGC 2 cut(s) 377, 387
BpuMI CCSGG 1 cut(s) 27
BsaJI CCNNGG 3 cut(s) 8, 119, 396
Bsc4I CCNNNNNNNGG 2 cut(s) 201, 302
Bse1I ACTGG 1 cut(s) 57
BseBI CCWGG 1 cut(s) 279
BseDI CCNNGG 3 cut(s) 8, 119, 396
BseGI GGATG 2 cut(s) 19, 181
BseLI CCNNNNNNNGG 2 cut(s) 201, 302
BseMII CTCAG 3 cut(s) 171, 368, 378
BseNI ACTGG 1 cut(s) 57
BseXI GCAGC 1 cut(s) 370
BseYI CCCAGC 1 cut(s) 171
BshFI GGCC 1 cut(s) 30
BsiSI CCGG 1 cut(s) 27
BslI CCNNNNNNNGG 2 cut(s) 201, 302
BsmAI GTCTC 1 cut(s) 182
BsnI GGCC 1 cut(s) 30
Bsp143I GATC 2 cut(s) 230, 291
BspANI GGCC 1 cut(s) 30
BspCNI CTCAG 3 cut(s) 172, 369, 379
BspPI GGATC 1 cut(s) 286
BsrI ACTGG 1 cut(s) 57
BssECI CCNNGG 3 cut(s) 8, 119, 396
BssMI GATC 2 cut(s) 230, 291
BssT1I CCWWGG 2 cut(s) 8, 396
Bst2UI CCWGG 1 cut(s) 279
BstDEI CTNAG 4 cut(s) 72, 180, 377, 387
BstENI CCTNNNNNAGG 1 cut(s) 300
BstF5I GGATG 2 cut(s) 19, 181
BstKTI GATC 2 cut(s) 233, 294
BstMAI GTCTC 1 cut(s) 182
BstMBI GATC 2 cut(s) 230, 291
BstMWI GCNNNNNNNGC 2 cut(s) 392, 401
BstNI CCWGG 1 cut(s) 279
BstSCI CCNGG 2 cut(s) 25, 277
BstV1I GCAGC 1 cut(s) 370
BstX2I RGATCY 1 cut(s) 230
BstYI RGATCY 1 cut(s) 230
BsuRI GGCC 1 cut(s) 30
BtsCI GGATG 2 cut(s) 19, 181
BtsIMutI CAGTG 2 cut(s) 50, 338
CseI GACGC 1 cut(s) 202
CviJI RGCY 7 cut(s) 25, 30, 201, 251, 371, 383, 395
CviKI_1 RGCY 7 cut(s) 25, 30, 201, 251, 371, 383, 395
DdeI CTNAG 4 cut(s) 72, 180, 377, 387
DpnI GATC 2 cut(s) 232, 293
DpnII GATC 2 cut(s) 230, 291
DraIII CACNNNGTG 1 cut(s) 56
EaeI YGGCCR 1 cut(s) 28
Eco130I CCWWGG 2 cut(s) 8, 396
Eco32I GATATC 1 cut(s) 275
EcoNI CCTNNNNNAGG 1 cut(s) 300
EcoRII CCWGG 1 cut(s) 277
EcoRV GATATC 1 cut(s) 275
EcoT14I CCWWGG 2 cut(s) 8, 396
ErhI CCWWGG 2 cut(s) 8, 396
FalI AAGNNNNNCTT 2 cut(s) 311, 343
FauNDI CATATG 1 cut(s) 238
Fnu4HI GCNGC 1 cut(s) 384
FokI GGATG 2 cut(s) 26, 188
Fsp4HI GCNGC 1 cut(s) 384
GluI GCNGC 1 cut(s) 384
GsaI CCCAGC 1 cut(s) 175
HaeIII GGCC 1 cut(s) 30
HapII CCGG 1 cut(s) 27
HgaI GACGC 1 cut(s) 202
HinfI GANTC 3 cut(s) 68, 151, 362
HpaII CCGG 1 cut(s) 27
HphI GGTGA 2 cut(s) 68, 427
Hpy188I TCNGA 1 cut(s) 269
Hpy188III TCNNGA 1 cut(s) 308
Hpy99I CGWCG 1 cut(s) 218
HpyAV CCTTC 2 cut(s) 241, 296
HpyCH4V TGCA 4 cut(s) 38, 224, 236, 262
HpyF10VI GCNNNNNNNGC 2 cut(s) 392, 401
HpyF3I CTNAG 4 cut(s) 72, 180, 377, 387
Kzo9I GATC 2 cut(s) 230, 291
LpnPI CCDG 9 cut(s) 38, 40, 87, 112, 157, 187, 208, 264, 291
Lsp1109I GCAGC 1 cut(s) 370
LweI GCATC 1 cut(s) 166
MalI GATC 2 cut(s) 232, 293
MboI GATC 2 cut(s) 230, 291
MboII GAAGA 1 cut(s) 80
MflI RGATCY 1 cut(s) 230
MlyI GAGTC 1 cut(s) 145
MnlI CCTC 5 cut(s) 102, 114, 263, 372, 382
MseI TTAA 1 cut(s) 44
MspI CCGG 1 cut(s) 27
MspR9I CCNGG 2 cut(s) 27, 279
MvaI CCWGG 1 cut(s) 279
MwoI GCNNNNNNNGC 2 cut(s) 392, 401
NciI CCSGG 1 cut(s) 27
NdeI CATATG 1 cut(s) 238
NdeII GATC 2 cut(s) 230, 291
PfeI GAWTC 2 cut(s) 68, 362
PfoI TCCNGGA 1 cut(s) 277
PkrI GCNGC 1 cut(s) 385
PleI GAGTC 1 cut(s) 145
PpsI GAGTC 1 cut(s) 145
PshBI ATTAAT 1 cut(s) 44
Psp6I CCWGG 1 cut(s) 277
PspFI CCCAGC 1 cut(s) 171
PspGI CCWGG 1 cut(s) 277
PsuI RGATCY 1 cut(s) 230
SaqAI TTAA 1 cut(s) 44
SatI GCNGC 1 cut(s) 384
Sau3AI GATC 2 cut(s) 230, 291
SchI GAGTC 1 cut(s) 145
ScrFI CCNGG 2 cut(s) 27, 279
SetI ASST 5 cut(s) 125, 138, 307, 373, 417
SfaNI GCATC 1 cut(s) 166
StyD4I CCNGG 2 cut(s) 25, 277
StyI CCWWGG 2 cut(s) 8, 396
TfiI GAWTC 2 cut(s) 68, 362
Tru1I TTAA 1 cut(s) 44
Tru9I TTAA 1 cut(s) 44
TscAI CASTG 2 cut(s) 57, 345
TseI GCWGC 1 cut(s) 383
TspDTI ATGAA 1 cut(s) 30
TspRI CASTG 2 cut(s) 57, 345
VspI ATTAAT 1 cut(s) 44
XagI CCTNNNNNAGG 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.