Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000369

Physical Location & Seq

Genomic Coordinates Forward (+)

50101252 .. 50101602

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG300400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGCAATTAATTAGATGGAAAAATTCAGTTGCAGTTGTAGGCTATCTTCCGGTGCAGGAGGGCGACCAATTTGTTATGTGGGTGGATACTACAACTGATCAAGAAACTAACACTTGTTCTTGGATTCAACAAATAAGAATCAGATGGCCATCTTCGTTATTCCACATAGGAGTTTGGAAGGATCAACATGTTTTCACCAAAAATGGAGATGAAGCTGGTGCAGATAATGATGAACCGGGGAACTTGTTTTTGTATGACCCTATAACCCAGACATTAAGTAAGGTACATGCAGAAAGAAACGTTTGCTTTTATTCCGTAGTGGGTTATGCGGAGAGCAACGTCCAGCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006082 GO:0006518 GO:0006629 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009403 GO:0009404 GO:0009987 GO:0016053 GO:0018130 GO:0018958 GO:0019438 GO:0019748 GO:0019752 GO:0032787 GO:0034641 GO:0042180 GO:0042181 GO:0042537 GO:0043043 GO:0043385 GO:0043386 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044550 GO:0045460 GO:0045461 GO:0046189 GO:0046394 GO:0046483 GO:0050761 GO:0050763 GO:0071704 GO:0072330 GO:1900555 GO:1900557 GO:1900582 GO:1900584 GO:1900813 GO:1900815 GO:1901334 GO:1901336 GO:1901360 GO:1901362 GO:1901376 GO:1901378 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00254 map00254

Pfam Domains

Protein Families

Acyl_transf_1 KAsynt_C_assoc Ketoacyl-synt_C PP-binding PS-DH SAT Thioesterase ketoacyl-synt

Protein Analysis

116

Amino Acids

13.32

Weight (kDa)

4.79

Isoelectric Point (pI)

32.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000369)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica	MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica	Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis	pycom17g23320
rosa_chinensis	RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata	RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora	Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa	Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha	Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana	Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	329
AclI	AACGTT	1 cut(s)	300
AclWI	GGATC	1 cut(s)	189
AcoI	YGGCCR	1 cut(s)	146
AcsI	RAATTY	1 cut(s)	22
AfaI	GTAC	1 cut(s)	285
AflIII	ACRYGT	1 cut(s)	187
AgsI	TTSAA	1 cut(s)	128
AluBI	AGCT	2 cut(s)	215, 346
AluI	AGCT	2 cut(s)	215, 346
AlwI	GGATC	1 cut(s)	189
AoxI	GGCC	1 cut(s)	146
ApoI	RAATTY	1 cut(s)	22
AseI	ATTAAT	1 cut(s)	8
AsuC2I	CCSGG	1 cut(s)	237
AsuHPI	GGTGA	1 cut(s)	187
BalI	TGGCCA	1 cut(s)	148
BarI	GAAGNNNNNNTAC	2 cut(s)	30, 62
BccI	CCATC	3 cut(s)	9, 138, 157
BciVI	GTATCC	1 cut(s)	79
BclI	TGATCA	1 cut(s)	97
BcnI	CCSGG	1 cut(s)	237
BfmI	CTRYAG	1 cut(s)	347
BfuI	GTATCC	1 cut(s)	79
Bme1390I	CCNGG	1 cut(s)	237
BmrFI	CCNGG	1 cut(s)	237
BpuMI	CCSGG	1 cut(s)	237
BsaBI	GATNNNNATC	1 cut(s)	148
BsaJI	CCNNGG	1 cut(s)	236
BsaWI	WCCGGW	1 cut(s)	49
Bse8I	GATNNNNATC	1 cut(s)	148
BseDI	CCNNGG	1 cut(s)	236
BseJI	GATNNNNATC	1 cut(s)	148
BsgI	GTGCAG	2 cut(s)	74, 240
BshFI	GGCC	1 cut(s)	148
BsiSI	CCGG	2 cut(s)	50, 236
BsnI	GGCC	1 cut(s)	148
Bsp143I	GATC	2 cut(s)	97, 181
BspACI	CCGC	1 cut(s)	329
BspANI	GGCC	1 cut(s)	148
BspPI	GGATC	1 cut(s)	189
BssECI	CCNNGG	1 cut(s)	236
BssMI	GATC	2 cut(s)	97, 181
BstKTI	GATC	2 cut(s)	100, 184
BstMBI	GATC	2 cut(s)	97, 181
BstNSI	RCATGY	2 cut(s)	191, 290
BstSCI	CCNGG	1 cut(s)	235
BstSFI	CTRYAG	1 cut(s)	347
BsuI	GTATCC	1 cut(s)	79
BsuRI	GGCC	1 cut(s)	148
Csp6I	GTAC	1 cut(s)	284
CviAII	CATG	2 cut(s)	188, 287
CviJI	RGCY	4 cut(s)	42, 148, 215, 346
CviKI_1	RGCY	4 cut(s)	42, 148, 215, 346
CviQI	GTAC	1 cut(s)	284
DpnI	GATC	2 cut(s)	99, 183
DpnII	GATC	2 cut(s)	97, 181
EaeI	YGGCCR	1 cut(s)	146
FaeI	CATG	2 cut(s)	191, 290
FaiI	YATR	8 cut(s)	77, 167, 189, 255, 263, 288, 327, 349
FatI	CATG	2 cut(s)	187, 286
FbaI	TGATCA	1 cut(s)	97
HaeIII	GGCC	1 cut(s)	148
HapII	CCGG	2 cut(s)	50, 236
Hin1II	CATG	2 cut(s)	191, 290
HinfI	GANTC	2 cut(s)	124, 138
HpaII	CCGG	2 cut(s)	50, 236
HphI	GGTGA	1 cut(s)	187
Hpy188I	TCNGA	1 cut(s)	143
Hpy188III	TCNNGA	1 cut(s)	101
HpyAV	CCTTC	1 cut(s)	172
HpyCH4IV	ACGT	2 cut(s)	300, 339
HpyCH4V	TGCA	5 cut(s)	4, 32, 55, 221, 290
HpySE526I	ACGT	2 cut(s)	300, 339
Hsp92II	CATG	2 cut(s)	191, 290
Ksp22I	TGATCA	1 cut(s)	97
Kzo9I	GATC	2 cut(s)	97, 181
LpnPI	CCDG	5 cut(s)	41, 63, 201, 249, 281
MaeII	ACGT	2 cut(s)	300, 339
MalI	GATC	2 cut(s)	99, 183
MboI	GATC	2 cut(s)	97, 181
MboII	GAAGA	2 cut(s)	38, 144
MlsI	TGGCCA	1 cut(s)	148
MluCI	AATT	4 cut(s)	5, 9, 22, 68
MluNI	TGGCCA	1 cut(s)	148
MnlI	CCTC	1 cut(s)	52
Mox20I	TGGCCA	1 cut(s)	148
MscI	TGGCCA	1 cut(s)	148
MseI	TTAA	2 cut(s)	8, 275
Msp20I	TGGCCA	1 cut(s)	148
MspI	CCGG	2 cut(s)	50, 236
MspR9I	CCNGG	1 cut(s)	237
NciI	CCSGG	1 cut(s)	237
NdeII	GATC	2 cut(s)	97, 181
NlaIII	CATG	2 cut(s)	191, 290
NspI	RCATGY	2 cut(s)	191, 290
PciI	ACATGT	1 cut(s)	187
PfeI	GAWTC	2 cut(s)	124, 138
PscI	ACATGT	1 cut(s)	187
PshBI	ATTAAT	1 cut(s)	8
Psp1406I	AACGTT	1 cut(s)	300
RsaI	GTAC	1 cut(s)	285
RsaNI	GTAC	1 cut(s)	284
SaqAI	TTAA	2 cut(s)	8, 275
Sau3AI	GATC	2 cut(s)	97, 181
ScrFI	CCNGG	1 cut(s)	237
SetI	ASST	5 cut(s)	217, 285, 303, 342, 348
SfcI	CTRYAG	1 cut(s)	347
Sse9I	AATT	4 cut(s)	5, 9, 22, 68
SsiI	CCGC	1 cut(s)	329
StyD4I	CCNGG	1 cut(s)	235
TaiI	ACGT	2 cut(s)	303, 342
TasI	AATT	4 cut(s)	5, 9, 22, 68
TfiI	GAWTC	2 cut(s)	124, 138
Tru1I	TTAA	2 cut(s)	8, 275
Tru9I	TTAA	2 cut(s)	8, 275
TspDTI	ATGAA	2 cut(s)	225, 246
TspGWI	ACGGA	1 cut(s)	304
VspI	ATTAAT	1 cut(s)	8
XapI	RAATTY	1 cut(s)	22
XceI	RCATGY	2 cut(s)	191, 290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.