Rh7BG061400

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000369
Physical Location & Seq
Reverse (-)
4103467 .. 4103952
486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG061400.1

Sequence Viewer

Length: 486 bp
ATGTGTGTGTCGCAAGAGTGGTCTGCTCTCATAAAAAGCTCTCGTTTCATTGCAATTCACCAAAAATGCCTTCAACGCTTGAATCCTCCGAATCTCTGTTTACTCTATGGTCACAGTTCCGGAAGTAGATATGCTAAATATCCCAAGCACCATGGGATTTCATTGCTTGGCAAACACACACATTTGGAGGGATTAGATCTGCCTGAACGTGTCCAGCAAGACTCTTATGATAGGTTGATACTTATTGCGGGATCTAGCAATGGTCTAGTCTGCCTTCATCCTCTTAACACTCCGAAGGAGATAATCGTCGTGTGGAACCCAGCAACAAGACAGCATAGGTATCTTCCTAAACCATTGTCTTTTAAGGGTAGGAAGGAGACTTCTGATGCACCACTGTTAGGTTTCGGATTCATTAACGACAATGGCAAGTATAATACTGATTACAAAGTCGTGAGGATTTCCCACAGCAAGGATCGTGATTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

161

Amino Acids

18.26

Weight (kDa)

9.54

Isoelectric Point (pI)

31.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis pycom17g23320
rosa_chinensis RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 119
AciI CCGC 1 cut(s) 248
AclWI GGATC 2 cut(s) 259, 480
AfiI CCNNNNNNNGG 2 cut(s) 398, 469
AflIII ACRYGT 1 cut(s) 208
AgsI TTSAA 2 cut(s) 74, 82
AjuI GAANNNNNNNTTGG 2 cut(s) 54, 86
AluBI AGCT 1 cut(s) 39
AluI AGCT 1 cut(s) 39
Alw26I GTCTC 1 cut(s) 371
AlwI GGATC 2 cut(s) 259, 480
Aor13HI TCCGGA 1 cut(s) 119
AsuHPI GGTGA 1 cut(s) 50
BcoDI GTCTC 1 cut(s) 371
BfaI CTAG 2 cut(s) 255, 266
BglII AGATCT 1 cut(s) 196
BmiI GGNNCC 1 cut(s) 317
BmsI GCATC 1 cut(s) 376
BsaJI CCNNGG 1 cut(s) 151
BsaWI WCCGGW 1 cut(s) 119
Bsc4I CCNNNNNNNGG 2 cut(s) 398, 469
Bse3DI GCAATG 3 cut(s) 48, 161, 265
BseAI TCCGGA 1 cut(s) 119
BseDI CCNNGG 1 cut(s) 151
BseGI GGATG 1 cut(s) 277
BseLI CCNNNNNNNGG 2 cut(s) 398, 469
BseMI GCAATG 3 cut(s) 48, 161, 265
BseYI CCCAGC 1 cut(s) 319
BsiSI CCGG 1 cut(s) 120
BslI CCNNNNNNNGG 2 cut(s) 398, 469
BsmAI GTCTC 1 cut(s) 371
Bsp13I TCCGGA 1 cut(s) 119
Bsp143I GATC 3 cut(s) 196, 251, 472
Bsp19I CCATGG 1 cut(s) 151
BspACI CCGC 1 cut(s) 248
BspEI TCCGGA 1 cut(s) 119
BspLI GGNNCC 1 cut(s) 317
BspPI GGATC 2 cut(s) 259, 480
BsrDI GCAATG 3 cut(s) 48, 161, 265
BssECI CCNNGG 1 cut(s) 151
BssMI GATC 3 cut(s) 196, 251, 472
BssT1I CCWWGG 1 cut(s) 151
Bst4CI ACNGT 2 cut(s) 116, 396
BstDSI CCRYGG 1 cut(s) 151
BstF5I GGATG 1 cut(s) 277
BstKTI GATC 3 cut(s) 199, 254, 475
BstMAI GTCTC 1 cut(s) 371
BstMBI GATC 3 cut(s) 196, 251, 472
BstMWI GCNNNNNNNGC 1 cut(s) 75
BstX2I RGATCY 2 cut(s) 196, 251
BstYI RGATCY 2 cut(s) 196, 251
BtgI CCRYGG 1 cut(s) 151
BtsCI GGATG 1 cut(s) 277
BtsIMutI CAGTG 1 cut(s) 392
CviAII CATG 1 cut(s) 152
CviJI RGCY 1 cut(s) 39
CviKI_1 RGCY 1 cut(s) 39
DpnI GATC 3 cut(s) 198, 253, 474
DpnII GATC 3 cut(s) 196, 251, 472
Eco130I CCWWGG 1 cut(s) 151
EcoT14I CCWWGG 1 cut(s) 151
ErhI CCWWGG 1 cut(s) 151
FaeI CATG 1 cut(s) 155
FaiI YATR 7 cut(s) 32, 108, 132, 153, 228, 336, 432
FatI CATG 1 cut(s) 151
FauI CCCGC 1 cut(s) 241
FokI GGATG 1 cut(s) 264
FspBI CTAG 2 cut(s) 255, 266
GsaI CCCAGC 1 cut(s) 323
HapII CCGG 1 cut(s) 120
Hin1II CATG 1 cut(s) 155
HinfI GANTC 5 cut(s) 82, 91, 221, 408, 479
HpaII CCGG 1 cut(s) 120
HphI GGTGA 1 cut(s) 50
Hpy166II GTNNAC 1 cut(s) 101
Hpy188I TCNGA 4 cut(s) 90, 294, 385, 407
Hpy188III TCNNGA 4 cut(s) 120, 451, 476, 483
Hpy8I GTNNAC 1 cut(s) 101
Hpy99I CGWCG 1 cut(s) 311
HpyAV CCTTC 4 cut(s) 80, 284, 289, 367
HpyCH4III ACNGT 2 cut(s) 116, 396
HpyCH4IV ACGT 1 cut(s) 208
HpyCH4V TGCA 2 cut(s) 53, 389
HpyF10VI GCNNNNNNNGC 1 cut(s) 75
HpySE526I ACGT 1 cut(s) 208
Hsp92II CATG 1 cut(s) 155
Kpn2I TCCGGA 1 cut(s) 119
Kzo9I GATC 3 cut(s) 196, 251, 472
LpnPI CCDG 4 cut(s) 133, 216, 227, 333
LweI GCATC 1 cut(s) 376
MaeI CTAG 2 cut(s) 255, 266
MaeII ACGT 1 cut(s) 208
MaeIII GTNAC 1 cut(s) 110
MalI GATC 3 cut(s) 198, 253, 474
MboI GATC 3 cut(s) 196, 251, 472
MboII GAAGA 1 cut(s) 335
MflI RGATCY 2 cut(s) 196, 251
MluCI AATT 1 cut(s) 54
MlyI GAGTC 1 cut(s) 215
MnlI CCTC 4 cut(s) 96, 181, 291, 447
MroI TCCGGA 1 cut(s) 119
MseI TTAA 3 cut(s) 285, 363, 414
MspI CCGG 1 cut(s) 120
MwoI GCNNNNNNNGC 1 cut(s) 75
NcoI CCATGG 1 cut(s) 151
NdeII GATC 3 cut(s) 196, 251, 472
NlaIII CATG 1 cut(s) 155
NlaIV GGNNCC 1 cut(s) 317
NmuCI GTSAC 1 cut(s) 110
PfeI GAWTC 4 cut(s) 82, 91, 408, 479
PleI GAGTC 1 cut(s) 215
PpsI GAGTC 1 cut(s) 215
PspFI CCCAGC 1 cut(s) 319
PspN4I GGNNCC 1 cut(s) 317
PsuI RGATCY 2 cut(s) 196, 251
SaqAI TTAA 3 cut(s) 285, 363, 414
Sau3AI GATC 3 cut(s) 196, 251, 472
SchI GAGTC 1 cut(s) 215
SetI ASST 5 cut(s) 41, 211, 236, 341, 403
SfaNI GCATC 1 cut(s) 376
Sse9I AATT 1 cut(s) 54
SsiI CCGC 1 cut(s) 248
SspMI CTAG 2 cut(s) 255, 266
StyI CCWWGG 1 cut(s) 151
TaaI ACNGT 2 cut(s) 116, 396
TaiI ACGT 1 cut(s) 211
TasI AATT 1 cut(s) 54
TfiI GAWTC 4 cut(s) 82, 91, 408, 479
Tru1I TTAA 3 cut(s) 285, 363, 414
Tru9I TTAA 3 cut(s) 285, 363, 414
TscAI CASTG 1 cut(s) 399
TseFI GTSAC 1 cut(s) 110
Tsp45I GTSAC 1 cut(s) 110
TspDTI ATGAA 4 cut(s) 37, 150, 266, 400
TspRI CASTG 1 cut(s) 399
XspI CTAG 2 cut(s) 255, 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.