RLG00000012470

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000369
Physical Location & Seq
Forward (+)
19098451 .. 19099374
924 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012470

Sequence Viewer

Length: 924 bp
ATGGAAGCTGGAAGCTCTAATTCTCTGGCTGTAGCTGATGAAAGTGTTCTAGTAGAAATTCTCTCAAAACTGCCTCTCAAGTCTATATATAGGTTTAGGTGTGTATCGAAAGAGTGGAATGCTCTCACTAGAACTTCATATTTCCTGGACAGACATCGTCTTCACAGCTCTCGCCGCCTCCTCCTCATCTCCTCCTCTTCTCTTGCTGATCAGAAACCAGCTGGAATCTCATTACTTGCCGATGAAGAAACAGCACTTTCAAGTTTGAATATACCTTTCCTCCCCAGCGATGCAAGATGGGATTTAGATTTTGTGGGATCTAGTAATGGGTTAGTTTGCTGTAATAAGTTTCTTGATGGTAATGTATTAGCCATAATAGTATGGAACCCAGCAACAACACAATTTAATTATCATCGTCGTTCCTTTTGGGAGGAACTTGAGAATGCTACTTCCTATCCTCTTATAGGTTTTGATTTCATGCATAGCACCAATGTGTACAAAATGGTGGAAGTTTTCCCATATGGTAGTGATGATCCGGATGATCCCCTAAAACTTGGTTTTGGAGCCGCAGTCTTCACCCAGAATACACCTTCTTGGAGAGTAGTTGAGTCGAGAATTGGACTTGCATCATGTAAAATGTGTTATACAAATCAGTCTACTACCTTGAATGGAGTGCTGTATTGGTTGGTAGAGCATACATCCAATGGGTTTGCTGTCGTTTCGTTTAGTTTACATGATGAGGCCTTCAAGGATATATGTAAATCACTACCAGAAGAAATACGCTATGTCAGTGATAATAACCTCGTCCCAACATTAATTTCATGGAGAAATTCACTTGCAGTTGTAGGTGTGGATCAGGGTGACAACTTAGTGCTTTGGGTGGATAGTACTGCTGATGAGAATCAGATGGCCATCGCTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

308

Amino Acids

34.32

Weight (kDa)

4.92

Isoelectric Point (pI)

35.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 16 - 49 2.9e-07 F-box domain
FBA_1 PF07734 99 - 266 2.7e-14 F-box associated beta propeller domain
FBA_3 PF08268 100 - 294 5.8e-12 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis pycom17g23320
rosa_chinensis RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 656
AccIII TCCGGA 1 cut(s) 535
AciI CCGC 2 cut(s) 175, 567
AclWI GGATC 4 cut(s) 325, 527, 536, 861
AcoI YGGCCR 1 cut(s) 909
AcsI RAATTY 2 cut(s) 57, 829
AfaI GTAC 2 cut(s) 497, 889
AfiI CCNNNNNNNGG 1 cut(s) 464
AgsI TTSAA 4 cut(s) 261, 268, 667, 748
AjnI CCWGG 1 cut(s) 144
AjuI GAANNNNNNNTTGG 2 cut(s) 802, 834
AleI CACNNNNGTG 1 cut(s) 491
AluBI AGCT 5 cut(s) 8, 15, 35, 168, 221
AluI AGCT 5 cut(s) 8, 15, 35, 168, 221
AlwI GGATC 4 cut(s) 325, 527, 536, 861
Aor13HI TCCGGA 1 cut(s) 535
AoxI GGCC 2 cut(s) 741, 909
ApoI RAATTY 2 cut(s) 57, 829
AseI ATTAAT 1 cut(s) 815
Asp700I GAANNNNTTC 1 cut(s) 45
AsuHPI GGTGA 2 cut(s) 568, 872
BalI TGGCCA 1 cut(s) 911
BbsI GAAGAC 2 cut(s) 152, 565
BccI CCATC 4 cut(s) 291, 350, 901, 920
BciT130I CCWGG 1 cut(s) 146
BclI TGATCA 1 cut(s) 208
BfaI CTAG 3 cut(s) 50, 129, 321
BfmI CTRYAG 1 cut(s) 30
BisI GCNGC 2 cut(s) 175, 567
BlsI GCNGC 2 cut(s) 176, 568
BmcAI AGTACT 1 cut(s) 889
Bme1390I CCNGG 1 cut(s) 146
BmiI GGNNCC 2 cut(s) 386, 565
BmrFI CCNGG 1 cut(s) 146
BmsI GCATC 2 cut(s) 280, 635
BpiI GAAGAC 2 cut(s) 152, 565
BpuEI CTTGAG 2 cut(s) 62, 458
BsaBI GATNNNNATC 2 cut(s) 900, 911
BsaWI WCCGGW 1 cut(s) 535
BsaXI ACNNNNNCTCC 4 cut(s) 264, 294, 555, 585
Bsc4I CCNNNNNNNGG 1 cut(s) 464
Bse8I GATNNNNATC 2 cut(s) 900, 911
BseAI TCCGGA 1 cut(s) 535
BseBI CCWGG 1 cut(s) 146
BseGI GGATG 2 cut(s) 544, 698
BseJI GATNNNNATC 2 cut(s) 900, 911
BseLI CCNNNNNNNGG 1 cut(s) 464
BseRI GAGGAG 4 cut(s) 170, 173, 181, 184
BseYI CCCAGC 2 cut(s) 284, 388
BshFI GGCC 2 cut(s) 743, 911
BsiSI CCGG 1 cut(s) 536
BslFI GGGAC 1 cut(s) 791
BslI CCNNNNNNNGG 1 cut(s) 464
BsmFI GGGAC 1 cut(s) 791
BsmI GAATGC 2 cut(s) 124, 448
BsnI GGCC 2 cut(s) 743, 911
Bsp13I TCCGGA 1 cut(s) 535
Bsp1407I TGTACA 1 cut(s) 495
Bsp143I GATC 5 cut(s) 208, 317, 532, 541, 853
BspACI CCGC 2 cut(s) 175, 567
BspANI GGCC 2 cut(s) 743, 911
BspEI TCCGGA 1 cut(s) 535
BspLI GGNNCC 2 cut(s) 386, 565
BspPI GGATC 4 cut(s) 325, 527, 536, 861
BsrGI TGTACA 1 cut(s) 495
BssMI GATC 5 cut(s) 208, 317, 532, 541, 853
Bst2UI CCWGG 1 cut(s) 146
Bst6I CTCTTC 1 cut(s) 202
BstAUI TGTACA 1 cut(s) 495
BstDEI CTNAG 1 cut(s) 868
BstENI CCTNNNNNAGG 1 cut(s) 462
BstF5I GGATG 2 cut(s) 544, 698
BstKTI GATC 5 cut(s) 211, 320, 535, 544, 856
BstMBI GATC 5 cut(s) 208, 317, 532, 541, 853
BstMWI GCNNNNNNNGC 1 cut(s) 174
BstNI CCWGG 1 cut(s) 146
BstSCI CCNGG 1 cut(s) 144
BstSFI CTRYAG 1 cut(s) 30
BstV2I GAAGAC 2 cut(s) 152, 565
BstX2I RGATCY 1 cut(s) 317
BstYI RGATCY 1 cut(s) 317
BsuRI GGCC 2 cut(s) 743, 911
BtgZI GCGATG 2 cut(s) 303, 898
BtsCI GGATG 2 cut(s) 544, 698
BtsIMutI CAGTG 1 cut(s) 796
Csp6I GTAC 2 cut(s) 496, 888
CviAII CATG 4 cut(s) 478, 630, 734, 822
CviQI GTAC 2 cut(s) 496, 888
DdeI CTNAG 1 cut(s) 868
DpnI GATC 5 cut(s) 210, 319, 534, 543, 855
DpnII GATC 5 cut(s) 208, 317, 532, 541, 853
EaeI YGGCCR 1 cut(s) 909
Eam1104I CTCTTC 1 cut(s) 202
EarI CTCTTC 1 cut(s) 202
Eco147I AGGCCT 1 cut(s) 743
EcoNI CCTNNNNNAGG 1 cut(s) 462
EcoRII CCWGG 1 cut(s) 144
EcoT22I ATGCAT 1 cut(s) 483
FaeI CATG 4 cut(s) 481, 633, 737, 825
FaqI GGGAC 1 cut(s) 791
FatI CATG 4 cut(s) 477, 629, 733, 821
FauNDI CATATG 1 cut(s) 520
FbaI TGATCA 1 cut(s) 208
FblI GTMKAC 1 cut(s) 656
Fnu4HI GCNGC 2 cut(s) 175, 567
FokI GGATG 2 cut(s) 551, 685
Fsp4HI GCNGC 2 cut(s) 175, 567
FspBI CTAG 3 cut(s) 50, 129, 321
GluI GCNGC 2 cut(s) 175, 567
GsaI CCCAGC 2 cut(s) 288, 392
HaeIII GGCC 2 cut(s) 743, 911
HapII CCGG 1 cut(s) 536
Hin1II CATG 4 cut(s) 481, 633, 737, 825
HinfI GANTC 3 cut(s) 225, 608, 901
HpaII CCGG 1 cut(s) 536
HphI GGTGA 2 cut(s) 568, 872
Hpy166II GTNNAC 3 cut(s) 496, 657, 731
Hpy188I TCNGA 2 cut(s) 213, 906
Hpy188III TCNNGA 3 cut(s) 353, 536, 612
Hpy8I GTNNAC 3 cut(s) 496, 657, 731
Hpy99I CGWCG 1 cut(s) 420
HpyAV CCTTC 2 cut(s) 600, 754
HpyCH4V TGCA 4 cut(s) 293, 481, 626, 839
HpyF10VI GCNNNNNNNGC 1 cut(s) 174
HpyF3I CTNAG 1 cut(s) 868
Hsp92II CATG 4 cut(s) 481, 633, 737, 825
Kpn2I TCCGGA 1 cut(s) 535
Ksp22I TGATCA 1 cut(s) 208
Kzo9I GATC 5 cut(s) 208, 317, 532, 541, 853
LmnI GCTCC 1 cut(s) 563
LweI GCATC 2 cut(s) 280, 635
MaeI CTAG 3 cut(s) 50, 129, 321
MaeIII GTNAC 1 cut(s) 860
MalI GATC 5 cut(s) 210, 319, 534, 543, 855
MboI GATC 5 cut(s) 208, 317, 532, 541, 853
MboII GAAGA 5 cut(s) 152, 189, 257, 565, 785
MflI RGATCY 1 cut(s) 317
MlsI TGGCCA 1 cut(s) 911
MluCI AATT 7 cut(s) 19, 57, 401, 406, 615, 816, 829
MluNI TGGCCA 1 cut(s) 911
MlyI GAGTC 1 cut(s) 617
Mox20I TGGCCA 1 cut(s) 911
Mph1103I ATGCAT 1 cut(s) 483
MroI TCCGGA 1 cut(s) 535
MroXI GAANNNNTTC 1 cut(s) 45
MscI TGGCCA 1 cut(s) 911
MseI TTAA 2 cut(s) 405, 815
MslI CAYNNNNRTG 2 cut(s) 491, 917
Msp20I TGGCCA 1 cut(s) 911
MspA1I CMGCKG 1 cut(s) 221
MspI CCGG 1 cut(s) 536
MspR9I CCNGG 1 cut(s) 146
Mva1269I GAATGC 2 cut(s) 124, 448
MvaI CCWGG 1 cut(s) 146
MwoI GCNNNNNNNGC 1 cut(s) 174
NdeI CATATG 1 cut(s) 520
NdeII GATC 5 cut(s) 208, 317, 532, 541, 853
NlaIII CATG 4 cut(s) 481, 633, 737, 825
NlaIV GGNNCC 2 cut(s) 386, 565
NmuCI GTSAC 1 cut(s) 860
NsiI ATGCAT 1 cut(s) 483
OliI CACNNNNGTG 1 cut(s) 491
PceI AGGCCT 1 cut(s) 743
PctI GAATGC 2 cut(s) 124, 448
PdmI GAANNNNTTC 1 cut(s) 45
PfeI GAWTC 2 cut(s) 225, 901
PflFI GACNNNGTC 1 cut(s) 156
PfoI TCCNGGA 1 cut(s) 144
PkrI GCNGC 2 cut(s) 176, 568
PleI GAGTC 1 cut(s) 616
PpsI GAGTC 1 cut(s) 616
PshBI ATTAAT 1 cut(s) 815
Psp6I CCWGG 1 cut(s) 144
PspFI CCCAGC 2 cut(s) 284, 388
PspGI CCWGG 1 cut(s) 144
PspN4I GGNNCC 2 cut(s) 386, 565
PsuI RGATCY 1 cut(s) 317
PsyI GACNNNGTC 1 cut(s) 156
PvuII CAGCTG 1 cut(s) 221
RsaI GTAC 2 cut(s) 497, 889
RsaNI GTAC 2 cut(s) 496, 888
RseI CAYNNNNRTG 2 cut(s) 491, 917
SaqAI TTAA 2 cut(s) 405, 815
SatI GCNGC 2 cut(s) 175, 567
Sau3AI GATC 5 cut(s) 208, 317, 532, 541, 853
ScaI AGTACT 1 cut(s) 889
SchI GAGTC 1 cut(s) 617
ScrFI CCNGG 1 cut(s) 146
SfaNI GCATC 2 cut(s) 280, 635
SfcI CTRYAG 1 cut(s) 30
SmiMI CAYNNNNRTG 2 cut(s) 491, 917
SmlI CTYRAG 2 cut(s) 77, 437
SmoI CTYRAG 2 cut(s) 77, 437
Sse9I AATT 7 cut(s) 19, 57, 401, 406, 615, 816, 829
SseBI AGGCCT 1 cut(s) 743
SsiI CCGC 2 cut(s) 175, 567
SspMI CTAG 3 cut(s) 50, 129, 321
StuI AGGCCT 1 cut(s) 743
StyD4I CCNGG 1 cut(s) 144
TaqI TCGA 2 cut(s) 107, 611
TasI AATT 7 cut(s) 19, 57, 401, 406, 615, 816, 829
TatI WGTACW 2 cut(s) 495, 887
TauI GCSGC 2 cut(s) 177, 569
TfiI GAWTC 2 cut(s) 225, 901
Tru1I TTAA 2 cut(s) 405, 815
Tru9I TTAA 2 cut(s) 405, 815
TscAI CASTG 1 cut(s) 796
TseFI GTSAC 1 cut(s) 860
Tsp45I GTSAC 1 cut(s) 860
TspDTI ATGAA 5 cut(s) 54, 126, 258, 466, 810
TspRI CASTG 1 cut(s) 796
Tth111I GACNNNGTC 1 cut(s) 156
VspI ATTAAT 1 cut(s) 815
XagI CCTNNNNNAGG 1 cut(s) 462
XapI RAATTY 2 cut(s) 57, 829
XmiI GTMKAC 1 cut(s) 656
XmnI GAANNNNTTC 1 cut(s) 45
XspI CTAG 3 cut(s) 50, 129, 321
ZrmI AGTACT 1 cut(s) 889
Zsp2I ATGCAT 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.