Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000369

Physical Location & Seq

Genomic Coordinates Reverse (-)

4732767 .. 4734220

Gene Structure 1454 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG061400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGACTTGGCCGTCCAAGAACATTCCGGAAGTAGATTTGCTAAATATCCCAAGCACCATGGGATTTCATTGCTTGGCAAAGACACACATTTGGAGGGATTAGATCTGCCTGAACGTGTCCAGCAAGACTCTTATGATAGGTTGATACTTATTGCGGGATCTAGCAATGGTCTAGTCTGCCTTTATCCTCTTAACACTCCAAAGGAGATAATCGTCGTGTGGAACCCAGCAACAAGACAGCATAGGTATCTTCCTAAACCATTGTCTTTTAAGGGTAGGAAGGAGACTTCTGATGCTCCACTGTTAGGTTTCGGATTCATTAACGACAATGGTAAGTATAATACTGATTTCAAAGTCGTGAGGATTTCCCACAGCAAGGATCGTGATGCTGATGGAAGGTTTACATACCTAACCCAAGTCTTCACCCGAAGTGAGAAGTCATGGAGAGAAGTTAAAAACTGTATTCCACCAGGCGATTATAACTTTGAACCAGGCTCTTCAATTTCTTCGAATGGTGTGGTGTATTGCTTGGCAAGGACTAAGGGTGTTCCTTTTGTTTTCTCCTTCAATCTGCATGATGAGGTAATCCATAACATGCCAATGCCGCCTCGTTACAGTCTTTTTTATGGCCAACGTCTCTTTACGTGGGAAAATTCAGTTGCATTTTTAACCCATGTTGAACGTAAGTATGATCTTTGGGTAATGGAGAAAGAATCCGGTACACAAATGCCTACTTGGAATTGGACTGCGCAATTTACAATCAAAAATCTGCCACAATTTATGGATTTAATCTTTGTATTCTGGGATGGTTTATTTCTGTTTGTCAAAAGGCAGGTCAGAGCTGGACAAGATCTGGTTACGTATGATCGAGCTACAACCGGAGCGATGAAGGCTTTCAAACTTGCAACAGGGAACTCATGCCTTCAAGTGGTAGATTACGTTCAGAGCTTGGTTTCAGTATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0006139 GO:0006351 GO:0006366 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019899 GO:0019904 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0046483 GO:0070063 GO:0071704 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD zf-RING_2

Protein Analysis

321

Amino Acids

36.83

Weight (kDa)

8.88

Isoelectric Point (pI)

28.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_3	PF08268	48 - 240	2.8e-19	F-box associated beta propeller domain
FBA_1	PF07734	55 - 320	3.6e-18	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000369)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica	MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica	Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis	pycom17g23320
rosa_chinensis	RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata	RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora	Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa	Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha	Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana	Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	480
AasI	GACNNNNNNGTC	1 cut(s)	11
Acc16I	TGCGCA	1 cut(s)	750
Acc36I	ACCTGC	1 cut(s)	823
AccIII	TCCGGA	1 cut(s)	26
AciI	CCGC	2 cut(s)	155, 605
AclWI	GGATC	2 cut(s)	166, 387
AcoI	YGGCCR	2 cut(s)	9, 628
AcsI	RAATTY	1 cut(s)	652
AfaI	GTAC	1 cut(s)	721
AfiI	CCNNNNNNNGG	3 cut(s)	305, 376, 928
AflIII	ACRYGT	1 cut(s)	115
AgsI	TTSAA	7 cut(s)	352, 488, 501, 568, 680, 898, 926
AjnI	CCWGG	2 cut(s)	469, 490
AluBI	AGCT	3 cut(s)	842, 872, 948
AluI	AGCT	3 cut(s)	842, 872, 948
Alw26I	GTCTC	2 cut(s)	278, 641
AlwI	GGATC	2 cut(s)	166, 387
Aor13HI	TCCGGA	1 cut(s)	26
AoxI	GGCC	2 cut(s)	9, 628
ApoI	RAATTY	1 cut(s)	652
ArsI	GACNNNNNNTTYG	2 cut(s)	819, 851
Asp700I	GAANNNNTTC	1 cut(s)	893
AspLEI	GCGC	1 cut(s)	751
AsuHPI	GGTGA	1 cut(s)	415
AsuII	TTCGAA	1 cut(s)	509
BalI	TGGCCA	1 cut(s)	630
BbsI	GAAGAC	1 cut(s)	412
BccI	CCATC	2 cut(s)	386, 800
BciT130I	CCWGG	2 cut(s)	471, 492
BcoDI	GTCTC	2 cut(s)	278, 641
BfaI	CTAG	2 cut(s)	162, 173
BfuAI	ACCTGC	1 cut(s)	823
BglII	AGATCT	2 cut(s)	103, 850
BisI	GCNGC	1 cut(s)	605
BlsI	GCNGC	1 cut(s)	606
Bme1390I	CCNGG	2 cut(s)	471, 492
BmiI	GGNNCC	1 cut(s)	224
BmrFI	CCNGG	2 cut(s)	471, 492
BmsI	GCATC	2 cut(s)	283, 376
BpiI	GAAGAC	1 cut(s)	412
Bpu14I	TTCGAA	1 cut(s)	509
BsaAI	YACGTR	2 cut(s)	645, 861
BsaJI	CCNNGG	1 cut(s)	58
BsaWI	WCCGGW	3 cut(s)	26, 716, 878
Bsc4I	CCNNNNNNNGG	3 cut(s)	305, 376, 928
Bse3DI	GCAATG	2 cut(s)	68, 172
BseAI	TCCGGA	1 cut(s)	26
BseBI	CCWGG	2 cut(s)	471, 492
BseDI	CCNNGG	1 cut(s)	58
BseGI	GGATG	1 cut(s)	811
BseLI	CCNNNNNNNGG	3 cut(s)	305, 376, 928
BseMI	GCAATG	2 cut(s)	68, 172
BseYI	CCCAGC	1 cut(s)	226
BshFI	GGCC	2 cut(s)	11, 630
BsiSI	CCGG	3 cut(s)	27, 717, 879
BslI	CCNNNNNNNGG	3 cut(s)	305, 376, 928
BsmAI	GTCTC	2 cut(s)	278, 641
BsmBI	CGTCTC	1 cut(s)	641
BsnI	GGCC	2 cut(s)	11, 630
Bsp119I	TTCGAA	1 cut(s)	509
Bsp13I	TCCGGA	1 cut(s)	26
Bsp143I	GATC	6 cut(s)	103, 158, 379, 691, 850, 865
Bsp19I	CCATGG	1 cut(s)	58
BspACI	CCGC	2 cut(s)	155, 605
BspANI	GGCC	2 cut(s)	11, 630
BspEI	TCCGGA	1 cut(s)	26
BspLI	GGNNCC	1 cut(s)	224
BspMI	ACCTGC	1 cut(s)	823
BspPI	GGATC	2 cut(s)	166, 387
BspQI	GCTCTTC	1 cut(s)	502
BspT104I	TTCGAA	1 cut(s)	509
BsrDI	GCAATG	2 cut(s)	68, 172
BssECI	CCNNGG	1 cut(s)	58
BssMI	GATC	6 cut(s)	103, 158, 379, 691, 850, 865
BssT1I	CCWWGG	1 cut(s)	58
Bst2UI	CCWGG	2 cut(s)	471, 492
Bst4CI	ACNGT	3 cut(s)	303, 461, 617
Bst6I	CTCTTC	1 cut(s)	502
BstBAI	YACGTR	2 cut(s)	645, 861
BstBI	TTCGAA	1 cut(s)	509
BstDEI	CTNAG	1 cut(s)	540
BstDSI	CCRYGG	1 cut(s)	58
BstF5I	GGATG	1 cut(s)	811
BstHHI	GCGC	1 cut(s)	751
BstKTI	GATC	6 cut(s)	106, 161, 382, 694, 853, 868
BstMAI	GTCTC	2 cut(s)	278, 641
BstMBI	GATC	6 cut(s)	103, 158, 379, 691, 850, 865
BstMWI	GCNNNNNNNGC	2 cut(s)	604, 890
BstNI	CCWGG	2 cut(s)	471, 492
BstNSI	RCATGY	1 cut(s)	598
BstSCI	CCNGG	2 cut(s)	469, 490
BstSNI	TACGTA	1 cut(s)	861
BstV2I	GAAGAC	1 cut(s)	412
BstX2I	RGATCY	3 cut(s)	103, 158, 850
BstYI	RGATCY	3 cut(s)	103, 158, 850
BsuRI	GGCC	2 cut(s)	11, 630
BtgI	CCRYGG	1 cut(s)	58
BtgZI	GCGATG	1 cut(s)	899
BtsCI	GGATG	1 cut(s)	811
BtsIMutI	CAGTG	1 cut(s)	299
BveI	ACCTGC	1 cut(s)	823
CfoI	GCGC	1 cut(s)	751
Csp6I	GTAC	1 cut(s)	720
CviAII	CATG	6 cut(s)	59, 441, 575, 595, 674, 918
CviJI	RGCY	7 cut(s)	11, 495, 630, 842, 872, 893, 948
CviKI_1	RGCY	7 cut(s)	11, 495, 630, 842, 872, 893, 948
CviQI	GTAC	1 cut(s)	720
DdeI	CTNAG	1 cut(s)	540
DpnI	GATC	6 cut(s)	105, 160, 381, 693, 852, 867
DpnII	GATC	6 cut(s)	103, 158, 379, 691, 850, 865
DrdI	GACNNNNNNGTC	1 cut(s)	11
DseDI	GACNNNNNNGTC	1 cut(s)	11
EaeI	YGGCCR	2 cut(s)	9, 628
Eam1104I	CTCTTC	1 cut(s)	502
EarI	CTCTTC	1 cut(s)	502
Eco105I	TACGTA	1 cut(s)	861
Eco130I	CCWWGG	1 cut(s)	58
EcoRII	CCWGG	2 cut(s)	469, 490
EcoT14I	CCWWGG	1 cut(s)	58
ErhI	CCWWGG	1 cut(s)	58
Esp3I	CGTCTC	1 cut(s)	641
FaeI	CATG	6 cut(s)	62, 444, 578, 598, 677, 921
FatI	CATG	6 cut(s)	58, 440, 574, 594, 673, 917
FauI	CCCGC	1 cut(s)	148
Fnu4HI	GCNGC	1 cut(s)	605
FokI	GGATG	1 cut(s)	818
Fsp4HI	GCNGC	1 cut(s)	605
FspBI	CTAG	2 cut(s)	162, 173
FspI	TGCGCA	1 cut(s)	750
GlaI	GCGC	1 cut(s)	750
GluI	GCNGC	1 cut(s)	605
GsaI	CCCAGC	1 cut(s)	230
HaeIII	GGCC	2 cut(s)	11, 630
HapII	CCGG	3 cut(s)	27, 717, 879
HhaI	GCGC	1 cut(s)	751
Hin1II	CATG	6 cut(s)	62, 444, 578, 598, 677, 921
Hin6I	GCGC	1 cut(s)	749
HinP1I	GCGC	1 cut(s)	749
HinfI	GANTC	3 cut(s)	128, 315, 713
HpaII	CCGG	3 cut(s)	27, 717, 879
HphI	GGTGA	1 cut(s)	415
Hpy166II	GTNNAC	2 cut(s)	402, 722
Hpy188I	TCNGA	4 cut(s)	292, 314, 839, 945
Hpy188III	TCNNGA	3 cut(s)	27, 358, 383
Hpy8I	GTNNAC	2 cut(s)	402, 722
Hpy99I	CGWCG	1 cut(s)	218
HpyAV	CCTTC	5 cut(s)	274, 390, 574, 883, 932
HpyCH4III	ACNGT	3 cut(s)	303, 461, 617
HpyCH4IV	ACGT	6 cut(s)	115, 634, 644, 682, 860, 939
HpyCH4V	TGCA	3 cut(s)	574, 662, 905
HpyF10VI	GCNNNNNNNGC	2 cut(s)	604, 890
HpyF3I	CTNAG	1 cut(s)	540
HpySE526I	ACGT	6 cut(s)	115, 634, 644, 682, 860, 939
Hsp92II	CATG	6 cut(s)	62, 444, 578, 598, 677, 921
HspAI	GCGC	1 cut(s)	749
Kpn2I	TCCGGA	1 cut(s)	26
Kzo9I	GATC	6 cut(s)	103, 158, 379, 691, 850, 865
LguI	GCTCTTC	1 cut(s)	502
LmnI	GCTCC	2 cut(s)	301, 881
LweI	GCATC	2 cut(s)	283, 376
MaeI	CTAG	2 cut(s)	162, 173
MaeII	ACGT	6 cut(s)	115, 634, 644, 682, 860, 939
MaeIII	GTNAC	2 cut(s)	611, 856
MalI	GATC	6 cut(s)	105, 160, 381, 693, 852, 867
MboI	GATC	6 cut(s)	103, 158, 379, 691, 850, 865
MboII	GAAGA	4 cut(s)	242, 412, 489, 498
MflI	RGATCY	3 cut(s)	103, 158, 850
MlsI	TGGCCA	1 cut(s)	630
MluCI	AATT	5 cut(s)	501, 652, 739, 752, 776
MluNI	TGGCCA	1 cut(s)	630
MlyI	GAGTC	1 cut(s)	122
MnlI	CCTC	5 cut(s)	88, 198, 354, 574, 618
Mox20I	TGGCCA	1 cut(s)	630
MroI	TCCGGA	1 cut(s)	26
MroXI	GAANNNNTTC	1 cut(s)	893
MscI	TGGCCA	1 cut(s)	630
MseI	TTAA	6 cut(s)	192, 270, 321, 453, 668, 788
MslI	CAYNNNNRTG	1 cut(s)	599
Msp20I	TGGCCA	1 cut(s)	630
MspI	CCGG	3 cut(s)	27, 717, 879
MspR9I	CCNGG	2 cut(s)	471, 492
MvaI	CCWGG	2 cut(s)	471, 492
MwoI	GCNNNNNNNGC	2 cut(s)	604, 890
NcoI	CCATGG	1 cut(s)	58
NdeII	GATC	6 cut(s)	103, 158, 379, 691, 850, 865
NlaIII	CATG	6 cut(s)	62, 444, 578, 598, 677, 921
NlaIV	GGNNCC	1 cut(s)	224
NsbI	TGCGCA	1 cut(s)	750
NspI	RCATGY	1 cut(s)	598
NspV	TTCGAA	1 cut(s)	509
PciSI	GCTCTTC	1 cut(s)	502
PdmI	GAANNNNTTC	1 cut(s)	893
PfeI	GAWTC	2 cut(s)	315, 713
PkrI	GCNGC	1 cut(s)	606
PleI	GAGTC	1 cut(s)	122
PpsI	GAGTC	1 cut(s)	122
Ppu21I	YACGTR	2 cut(s)	645, 861
PsiI	TTATAA	1 cut(s)	480
Psp6I	CCWGG	2 cut(s)	469, 490
PspFI	CCCAGC	1 cut(s)	226
PspGI	CCWGG	2 cut(s)	469, 490
PspN4I	GGNNCC	1 cut(s)	224
PsrI	GAACNNNNNNTAC	2 cut(s)	924, 956
PsuI	RGATCY	3 cut(s)	103, 158, 850
RsaI	GTAC	1 cut(s)	721
RsaNI	GTAC	1 cut(s)	720
RseI	CAYNNNNRTG	1 cut(s)	599
SapI	GCTCTTC	1 cut(s)	502
SaqAI	TTAA	6 cut(s)	192, 270, 321, 453, 668, 788
SatI	GCNGC	1 cut(s)	605
Sau3AI	GATC	6 cut(s)	103, 158, 379, 691, 850, 865
SchI	GAGTC	1 cut(s)	122
ScrFI	CCNGG	2 cut(s)	471, 492
SfaNI	GCATC	2 cut(s)	283, 376
SfuI	TTCGAA	1 cut(s)	509
SmiMI	CAYNNNNRTG	1 cut(s)	599
SnaBI	TACGTA	1 cut(s)	861
Sse9I	AATT	5 cut(s)	501, 652, 739, 752, 776
SsiI	CCGC	2 cut(s)	155, 605
SspMI	CTAG	2 cut(s)	162, 173
StyD4I	CCNGG	2 cut(s)	469, 490
StyI	CCWWGG	1 cut(s)	58
TaaI	ACNGT	3 cut(s)	303, 461, 617
TaiI	ACGT	6 cut(s)	118, 637, 647, 685, 863, 942
TaqI	TCGA	2 cut(s)	509, 868
TasI	AATT	5 cut(s)	501, 652, 739, 752, 776
TauI	GCSGC	1 cut(s)	607
TfiI	GAWTC	2 cut(s)	315, 713
Tru1I	TTAA	6 cut(s)	192, 270, 321, 453, 668, 788
Tru9I	TTAA	6 cut(s)	192, 270, 321, 453, 668, 788
TscAI	CASTG	1 cut(s)	306
TspDTI	ATGAA	3 cut(s)	57, 307, 902
TspRI	CASTG	1 cut(s)	306
XapI	RAATTY	1 cut(s)	652
XceI	RCATGY	1 cut(s)	598
XmnI	GAANNNNTTC	1 cut(s)	893
XspI	CTAG	2 cut(s)	162, 173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.