Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000369

Physical Location & Seq

Genomic Coordinates Reverse (-)

4102830 .. 4103258

Gene Structure 429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG061300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGCCAATGCCGCCTCGTTACAGTCTTTTTTATGGCCAACGTCTCTTTACGTGGGAAAATTCAGTTGCATTTTTAACCTATGTCGACCATAAGTATGATCTTTGGGTGATGAAGAAAGAATCCGGTACACAAATGCCTACTTGGAATTGGACTGCACAATTTACAATAAAAAATCTCCCACAATCTATGTATTCAATCCTTGTATTCTGGTTTGGTTTATTTCTGTTTGTCAAAAGGCACGTCAAAGCTGGACAAGATCTGGTTACGTATGAATATGCTTCAGCCACAACCGAAGCGATGAAGGCTTTCAAACTTGCGACAGGGAACTCATGCCTTCAAGTGGTAGATTACGTGCAGAGCTTAGTTTCAGTATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0006139 GO:0006351 GO:0006366 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019899 GO:0019904 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0046483 GO:0070063 GO:0071704 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD zf-RING_2

Protein Analysis

125

Amino Acids

14.62

Weight (kDa)

9.01

Isoelectric Point (pI)

44.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000369)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica	MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica	Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis	pycom17g23320
rosa_chinensis	RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata	RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora	Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa	Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha	Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana	Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	84
AciI	CCGC	1 cut(s)	11
AcoI	YGGCCR	1 cut(s)	34
AcsI	RAATTY	1 cut(s)	58
AcuI	CTGAAG	1 cut(s)	264
AfaI	GTAC	1 cut(s)	127
AfiI	CCNNNNNNNGG	1 cut(s)	340
AgsI	TTSAA	3 cut(s)	195, 310, 338
AjiI	CACGTC	1 cut(s)	241
AluBI	AGCT	2 cut(s)	248, 360
AluI	AGCT	2 cut(s)	248, 360
Alw26I	GTCTC	1 cut(s)	47
AoxI	GGCC	1 cut(s)	34
ApoI	RAATTY	1 cut(s)	58
ArsI	GACNNNNNNTTYG	2 cut(s)	225, 257
Asp700I	GAANNNNTTC	1 cut(s)	305
AsuHPI	GGTGA	1 cut(s)	118
BalI	TGGCCA	1 cut(s)	36
BcoDI	GTCTC	1 cut(s)	47
BglII	AGATCT	1 cut(s)	256
BisI	GCNGC	1 cut(s)	11
BlsI	GCNGC	1 cut(s)	12
BmgBI	CACGTC	1 cut(s)	241
BsaAI	YACGTR	3 cut(s)	51, 267, 352
BsaWI	WCCGGW	1 cut(s)	122
Bsc4I	CCNNNNNNNGG	1 cut(s)	340
BseLI	CCNNNNNNNGG	1 cut(s)	340
BsgI	GTGCAG	2 cut(s)	138, 374
BshFI	GGCC	1 cut(s)	36
BsiSI	CCGG	1 cut(s)	123
BslI	CCNNNNNNNGG	1 cut(s)	340
BsmAI	GTCTC	1 cut(s)	47
BsmBI	CGTCTC	1 cut(s)	47
BsnI	GGCC	1 cut(s)	36
Bsp143I	GATC	2 cut(s)	97, 256
BspACI	CCGC	1 cut(s)	11
BspANI	GGCC	1 cut(s)	36
BssMI	GATC	2 cut(s)	97, 256
Bst4CI	ACNGT	1 cut(s)	23
BstBAI	YACGTR	3 cut(s)	51, 267, 352
BstDEI	CTNAG	1 cut(s)	361
BstKTI	GATC	2 cut(s)	100, 259
BstMAI	GTCTC	1 cut(s)	47
BstMBI	GATC	2 cut(s)	97, 256
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 302
BstSNI	TACGTA	1 cut(s)	267
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
BsuRI	GGCC	1 cut(s)	36
BtgZI	GCGATG	1 cut(s)	311
BtrI	CACGTC	1 cut(s)	241
Csp6I	GTAC	1 cut(s)	126
CviAII	CATG	1 cut(s)	330
CviJI	RGCY	5 cut(s)	36, 248, 284, 305, 360
CviKI_1	RGCY	5 cut(s)	36, 248, 284, 305, 360
CviQI	GTAC	1 cut(s)	126
DdeI	CTNAG	1 cut(s)	361
DpnI	GATC	2 cut(s)	99, 258
DpnII	GATC	2 cut(s)	97, 256
EaeI	YGGCCR	1 cut(s)	34
Eco105I	TACGTA	1 cut(s)	267
Eco57I	CTGAAG	1 cut(s)	264
Esp3I	CGTCTC	1 cut(s)	47
FaeI	CATG	1 cut(s)	333
FaiI	YATR	8 cut(s)	33, 81, 90, 96, 188, 270, 276, 331
FatI	CATG	1 cut(s)	329
FblI	GTMKAC	1 cut(s)	84
Fnu4HI	GCNGC	1 cut(s)	11
Fsp4HI	GCNGC	1 cut(s)	11
GluI	GCNGC	1 cut(s)	11
HaeIII	GGCC	1 cut(s)	36
HapII	CCGG	1 cut(s)	123
Hin1II	CATG	1 cut(s)	333
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HinfI	GANTC	1 cut(s)	119
HpaII	CCGG	1 cut(s)	123
HphI	GGTGA	1 cut(s)	118
Hpy166II	GTNNAC	2 cut(s)	85, 128
Hpy8I	GTNNAC	2 cut(s)	85, 128
HpyAV	CCTTC	2 cut(s)	295, 344
HpyCH4III	ACNGT	1 cut(s)	23
HpyCH4IV	ACGT	5 cut(s)	40, 50, 240, 266, 351
HpyCH4V	TGCA	3 cut(s)	68, 155, 355
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 302
HpyF3I	CTNAG	1 cut(s)	361
HpySE526I	ACGT	5 cut(s)	40, 50, 240, 266, 351
Hsp92II	CATG	1 cut(s)	333
Kzo9I	GATC	2 cut(s)	97, 256
LpnPI	CCDG	5 cut(s)	136, 193, 234, 245, 306
MaeII	ACGT	5 cut(s)	40, 50, 240, 266, 351
MaeIII	GTNAC	2 cut(s)	17, 262
MalI	GATC	2 cut(s)	99, 258
MboI	GATC	2 cut(s)	97, 256
MboII	GAAGA	1 cut(s)	124
MflI	RGATCY	1 cut(s)	256
MlsI	TGGCCA	1 cut(s)	36
MluCI	AATT	3 cut(s)	58, 145, 158
MluNI	TGGCCA	1 cut(s)	36
MnlI	CCTC	1 cut(s)	24
Mox20I	TGGCCA	1 cut(s)	36
MroXI	GAANNNNTTC	1 cut(s)	305
MscI	TGGCCA	1 cut(s)	36
MseI	TTAA	1 cut(s)	74
MslI	CAYNNNNRTG	1 cut(s)	93
Msp20I	TGGCCA	1 cut(s)	36
MspI	CCGG	1 cut(s)	123
MwoI	GCNNNNNNNGC	2 cut(s)	10, 302
NdeII	GATC	2 cut(s)	97, 256
NlaIII	CATG	1 cut(s)	333
PdmI	GAANNNNTTC	1 cut(s)	305
PfeI	GAWTC	1 cut(s)	119
PkrI	GCNGC	1 cut(s)	12
Ppu21I	YACGTR	3 cut(s)	51, 267, 352
PsuI	RGATCY	1 cut(s)	256
RsaI	GTAC	1 cut(s)	127
RsaNI	GTAC	1 cut(s)	126
RseI	CAYNNNNRTG	1 cut(s)	93
SalI	GTCGAC	1 cut(s)	83
SaqAI	TTAA	1 cut(s)	74
SatI	GCNGC	1 cut(s)	11
Sau3AI	GATC	2 cut(s)	97, 256
SetI	ASST	8 cut(s)	43, 53, 80, 243, 250, 269, 354, 362
SmiMI	CAYNNNNRTG	1 cut(s)	93
SnaBI	TACGTA	1 cut(s)	267
Sse9I	AATT	3 cut(s)	58, 145, 158
SsiI	CCGC	1 cut(s)	11
TaaI	ACNGT	1 cut(s)	23
TaiI	ACGT	5 cut(s)	43, 53, 243, 269, 354
TaqI	TCGA	1 cut(s)	84
TasI	AATT	3 cut(s)	58, 145, 158
TauI	GCSGC	1 cut(s)	13
TfiI	GAWTC	1 cut(s)	119
Tru1I	TTAA	1 cut(s)	74
Tru9I	TTAA	1 cut(s)	74
TspDTI	ATGAA	3 cut(s)	125, 285, 314
XapI	RAATTY	1 cut(s)	58
XmiI	GTMKAC	1 cut(s)	84
XmnI	GAANNNNTTC	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.