Rh3DG176900

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000369
Physical Location & Seq
Forward (+)
15700079 .. 15704110
4032 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG176900.1

Sequence Viewer

Length: 861 bp
ATGCGTCGTCACCTACCCCACCAGTCTTGGGGCGGATCCCACGTAGAAACGAAGGATGAGGAGGAGGATATACTACGTGTAAAGGACAACTCTTTGTCCTGTCCTCTTATAGGTTTTGATTTCGTACATGATCATGACATTACTGAATATAAACTGGTCAGAGTTTTCCATCATGATAGTGATGATCCCTACGATCATGGCAAAGTACTTACAACTTTTCGAGCTCAAGTCTTCGTCCAAAGCACAAATTCTTGGAGACAAGCCAAGAACGAGTTAGGGTCTCCGTCATGTGAAAATTCTTTTGCATCAACTTCGATTACATTGAATGGAGTGCTGTATTGGAAGGTACAGCGAGCAGGGGACGAGTGCTGTGTTCTGTCATTCAATTTACGTGAGGAGGTTTTCAATGTGATACAGCTACCAATCGATCTACGAAATCATGATGATTGGGGCGGACTCCAATTATATTCATGGAGAAATTCACCGGCGACTGTAGCACTTGATTATTCGGCCAATGACGATCTCAACGCAGCGCTTTGGGTGATGAGTACTGATCAAGAATCAAAGAGGAGTTGTAAGAATGTTGCACAAATACAAAATCCAGCTTGGACTCGACAGTTCAGATTCAAATACTTAGTAATTTCAGAAGCAACGCGCCTCCTGGGAAGTTGGAAAGATCAATTTCTCTTTGCATCCGACAAAAGTGATGAAGTTTTTGATGCGGCAGCTGATAATATTGTGCCTCAAGACCTGTTTTCGTATGACCCTAAAAGCGAGACAAAGAGAAAAATTCTCAAAGATGGAGAGAGGATCAAGTTTTGTGGAGGAGTAAATTATGTGGAGAGCCTAGTTCCAGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

286

Amino Acids

32.8

Weight (kDa)

5.38

Isoelectric Point (pI)

49.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 37 - 206 6.3e-13 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis pycom17g23320
rosa_chinensis RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 655
AciI CCGC 3 cut(s) 33, 453, 722
AclWI GGATC 4 cut(s) 30, 43, 179, 818
AcoI YGGCCR 1 cut(s) 510
AcsI RAATTY 4 cut(s) 247, 295, 478, 789
AfaI GTAC 4 cut(s) 126, 207, 348, 550
AfeI AGCGCT 1 cut(s) 534
AfiI CCNNNNNNNGG 2 cut(s) 28, 110
AflIII ACRYGT 1 cut(s) 76
AgsI TTSAA 4 cut(s) 325, 385, 406, 628
AjnI CCWGG 1 cut(s) 660
AluBI AGCT 4 cut(s) 224, 418, 605, 728
AluI AGCT 4 cut(s) 224, 418, 605, 728
Alw21I GWGCWC 1 cut(s) 226
Alw26I GTCTC 3 cut(s) 250, 285, 770
AlwI GGATC 4 cut(s) 30, 43, 179, 818
Aor51HI AGCGCT 1 cut(s) 534
AoxI GGCC 1 cut(s) 510
ApeKI GCWGC 2 cut(s) 530, 725
ApoI RAATTY 4 cut(s) 247, 295, 478, 789
AspLEI GCGC 2 cut(s) 535, 657
AsuHPI GGTGA 2 cut(s) 474, 553
BamHI GGATCC 1 cut(s) 35
BanII GRGCYC 1 cut(s) 226
BbsI GAAGAC 1 cut(s) 223
Bbv12I GWGCWC 1 cut(s) 226
BbvI GCAGC 2 cut(s) 542, 737
BccI CCATC 2 cut(s) 177, 794
BcgI CGANNNNNNTGC 2 cut(s) 294, 328
BciT130I CCWGG 1 cut(s) 662
BclI TGATCA 2 cut(s) 130, 553
BcoDI GTCTC 3 cut(s) 250, 285, 770
BfaI CTAG 2 cut(s) 848, 859
BfmI CTRYAG 1 cut(s) 492
BfoI RGCGCY 1 cut(s) 536
BisI GCNGC 3 cut(s) 531, 723, 726
BlsI GCNGC 3 cut(s) 532, 724, 727
BmcAI AGTACT 2 cut(s) 207, 550
Bme1390I CCNGG 1 cut(s) 662
BmiI GGNNCC 1 cut(s) 37
BmrFI CCNGG 1 cut(s) 662
BmsI GCATC 3 cut(s) 314, 701, 709
BpiI GAAGAC 1 cut(s) 223
BpuEI CTTGAG 2 cut(s) 210, 729
Bsa29I ATCGAT 1 cut(s) 426
BsaAI YACGTR 3 cut(s) 43, 77, 392
BsaI GGTCTC 1 cut(s) 285
BsaJI CCNNGG 1 cut(s) 661
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 110
Bse118I RCCGGY 1 cut(s) 484
Bse1I ACTGG 3 cut(s) 22, 159, 854
BseBI CCWGG 1 cut(s) 662
BseCI ATCGAT 1 cut(s) 426
BseDI CCNNGG 1 cut(s) 661
BseGI GGATG 2 cut(s) 61, 692
BseLI CCNNNNNNNGG 2 cut(s) 28, 110
BseNI ACTGG 3 cut(s) 22, 159, 854
BseRI GAGGAG 5 cut(s) 74, 77, 410, 583, 840
BseXI GCAGC 2 cut(s) 542, 737
Bsh1236I CGCG 1 cut(s) 655
BshFI GGCC 1 cut(s) 512
BshVI ATCGAT 1 cut(s) 426
BsiHKAI GWGCWC 1 cut(s) 226
BsiSI CCGG 1 cut(s) 485
BslFI GGGAC 1 cut(s) 374
BslI CCNNNNNNNGG 2 cut(s) 28, 110
BsmAI GTCTC 3 cut(s) 250, 285, 770
BsmFI GGGAC 1 cut(s) 374
BsnI GGCC 1 cut(s) 512
Bso31I GGTCTC 1 cut(s) 285
Bsp1286I GDGCHC 1 cut(s) 226
Bsp143I GATC 9 cut(s) 35, 130, 184, 193, 427, 520, 553, 676, 810
BspACI CCGC 3 cut(s) 33, 453, 722
BspANI GGCC 1 cut(s) 512
BspDI ATCGAT 1 cut(s) 426
BspFNI CGCG 1 cut(s) 655
BspHI TCATGA 3 cut(s) 133, 172, 439
BspLI GGNNCC 1 cut(s) 37
BspPI GGATC 4 cut(s) 30, 43, 179, 818
BspTNI GGTCTC 1 cut(s) 285
BsrFI RCCGGY 1 cut(s) 484
BsrI ACTGG 3 cut(s) 22, 159, 854
BssAI RCCGGY 1 cut(s) 484
BssECI CCNNGG 1 cut(s) 661
BssMI GATC 9 cut(s) 35, 130, 184, 193, 427, 520, 553, 676, 810
Bst2UI CCWGG 1 cut(s) 662
Bst4CI ACNGT 2 cut(s) 493, 618
BstBAI YACGTR 3 cut(s) 43, 77, 392
BstC8I GCNNGC 1 cut(s) 354
BstDEI CTNAG 1 cut(s) 634
BstENI CCTNNNNNAGG 1 cut(s) 108
BstF5I GGATG 2 cut(s) 61, 692
BstFNI CGCG 1 cut(s) 655
BstH2I RGCGCY 1 cut(s) 536
BstHHI GCGC 2 cut(s) 535, 657
BstKTI GATC 9 cut(s) 38, 133, 187, 196, 430, 523, 556, 679, 813
BstMAI GTCTC 3 cut(s) 250, 285, 770
BstMBI GATC 9 cut(s) 35, 130, 184, 193, 427, 520, 553, 676, 810
BstMWI GCNNNNNNNGC 1 cut(s) 494
BstNI CCWGG 1 cut(s) 662
BstSCI CCNGG 1 cut(s) 660
BstSFI CTRYAG 1 cut(s) 492
BstUI CGCG 1 cut(s) 655
BstV1I GCAGC 2 cut(s) 542, 737
BstV2I GAAGAC 1 cut(s) 223
BstX2I RGATCY 1 cut(s) 35
BstYI RGATCY 1 cut(s) 35
Bsu15I ATCGAT 1 cut(s) 426
BsuRI GGCC 1 cut(s) 512
BsuTUI ATCGAT 1 cut(s) 426
BtsCI GGATG 2 cut(s) 61, 692
Cac8I GCNNGC 1 cut(s) 354
CciI TCATGA 3 cut(s) 133, 172, 439
CfoI GCGC 2 cut(s) 535, 657
Cfr10I RCCGGY 1 cut(s) 484
ClaI ATCGAT 1 cut(s) 426
Csp6I GTAC 4 cut(s) 125, 206, 347, 549
CspCI CAANNNNNGTGG 4 cut(s) 8, 43, 802, 837
CviAII CATG 7 cut(s) 128, 134, 173, 197, 288, 440, 471
CviJI RGCY 7 cut(s) 224, 263, 418, 512, 605, 728, 846
CviKI_1 RGCY 7 cut(s) 224, 263, 418, 512, 605, 728, 846
CviQI GTAC 4 cut(s) 125, 206, 347, 549
DdeI CTNAG 1 cut(s) 634
DpnI GATC 9 cut(s) 37, 132, 186, 195, 429, 522, 555, 678, 812
DpnII GATC 9 cut(s) 35, 130, 184, 193, 427, 520, 553, 676, 810
EaeI YGGCCR 1 cut(s) 510
EciI GGCGGA 2 cut(s) 48, 468
Ecl136II GAGCTC 1 cut(s) 224
Eco24I GRGCYC 1 cut(s) 226
Eco31I GGTCTC 1 cut(s) 285
Eco47III AGCGCT 1 cut(s) 534
Eco53kI GAGCTC 1 cut(s) 224
EcoICRI GAGCTC 1 cut(s) 224
EcoNI CCTNNNNNAGG 1 cut(s) 108
EcoRII CCWGG 1 cut(s) 660
EcoT38I GRGCYC 1 cut(s) 226
FaeI CATG 7 cut(s) 131, 137, 176, 200, 291, 443, 474
FaqI GGGAC 1 cut(s) 374
FatI CATG 7 cut(s) 127, 133, 172, 196, 287, 439, 470
FbaI TGATCA 2 cut(s) 130, 553
Fnu4HI GCNGC 3 cut(s) 531, 723, 726
FokI GGATG 2 cut(s) 68, 679
FriOI GRGCYC 1 cut(s) 226
Fsp4HI GCNGC 3 cut(s) 531, 723, 726
FspBI CTAG 2 cut(s) 848, 859
GlaI GCGC 2 cut(s) 534, 656
GluI GCNGC 3 cut(s) 531, 723, 726
HaeII RGCGCY 1 cut(s) 536
HaeIII GGCC 1 cut(s) 512
HapII CCGG 1 cut(s) 485
HhaI GCGC 2 cut(s) 535, 657
Hin1II CATG 7 cut(s) 131, 137, 176, 200, 291, 443, 474
Hin6I GCGC 2 cut(s) 533, 655
HinP1I GCGC 2 cut(s) 533, 655
HinfI GANTC 4 cut(s) 456, 560, 610, 624
HpaII CCGG 1 cut(s) 485
HphI GGTGA 2 cut(s) 474, 553
Hpy188I TCNGA 4 cut(s) 161, 623, 646, 697
Hpy188III TCNNGA 5 cut(s) 134, 173, 440, 557, 746
Hpy99I CGWCG 1 cut(s) 9
HpyAV CCTTC 2 cut(s) 46, 337
HpyCH4III ACNGT 2 cut(s) 493, 618
HpyCH4IV ACGT 3 cut(s) 42, 76, 391
HpyCH4V TGCA 3 cut(s) 305, 587, 692
HpyF10VI GCNNNNNNNGC 1 cut(s) 494
HpyF3I CTNAG 1 cut(s) 634
HpySE526I ACGT 3 cut(s) 42, 76, 391
Hsp92II CATG 7 cut(s) 131, 137, 176, 200, 291, 443, 474
HspAI GCGC 2 cut(s) 533, 655
Ksp22I TGATCA 2 cut(s) 130, 553
Kzo9I GATC 9 cut(s) 35, 130, 184, 193, 427, 520, 553, 676, 810
LpnPI CCDG 9 cut(s) 35, 112, 140, 342, 498, 615, 647, 674, 764
Lsp1109I GCAGC 2 cut(s) 542, 737
LweI GCATC 3 cut(s) 314, 701, 709
MaeI CTAG 2 cut(s) 848, 859
MaeII ACGT 3 cut(s) 42, 76, 391
MaeIII GTNAC 1 cut(s) 8
MalI GATC 9 cut(s) 37, 132, 186, 195, 429, 522, 555, 678, 812
MboI GATC 9 cut(s) 35, 130, 184, 193, 427, 520, 553, 676, 810
MboII GAAGA 1 cut(s) 223
MflI RGATCY 1 cut(s) 35
MhlI GDGCHC 1 cut(s) 226
MluCI AATT 9 cut(s) 247, 295, 385, 461, 478, 639, 680, 789, 832
MlyI GAGTC 2 cut(s) 450, 604
MmeI TCCRAC 2 cut(s) 650, 720
MslI CAYNNNNRTG 2 cut(s) 132, 177
MspA1I CMGCKG 1 cut(s) 728
MspI CCGG 1 cut(s) 485
MspR9I CCNGG 1 cut(s) 662
MvaI CCWGG 1 cut(s) 662
MvnI CGCG 1 cut(s) 655
MwoI GCNNNNNNNGC 1 cut(s) 494
NdeII GATC 9 cut(s) 35, 130, 184, 193, 427, 520, 553, 676, 810
NlaIII CATG 7 cut(s) 131, 137, 176, 200, 291, 443, 474
NlaIV GGNNCC 1 cut(s) 37
NmuCI GTSAC 1 cut(s) 8
PagI TCATGA 3 cut(s) 133, 172, 439
PfeI GAWTC 2 cut(s) 560, 624
PkrI GCNGC 3 cut(s) 532, 724, 727
PleI GAGTC 2 cut(s) 450, 604
PpsI GAGTC 2 cut(s) 450, 604
Ppu21I YACGTR 3 cut(s) 43, 77, 392
Psp124BI GAGCTC 1 cut(s) 226
Psp6I CCWGG 1 cut(s) 660
PspGI CCWGG 1 cut(s) 660
PspN4I GGNNCC 1 cut(s) 37
PsuI RGATCY 1 cut(s) 35
PvuII CAGCTG 1 cut(s) 728
RsaI GTAC 4 cut(s) 126, 207, 348, 550
RsaNI GTAC 4 cut(s) 125, 206, 347, 549
RseI CAYNNNNRTG 2 cut(s) 132, 177
SacI GAGCTC 1 cut(s) 226
SatI GCNGC 3 cut(s) 531, 723, 726
Sau3AI GATC 9 cut(s) 35, 130, 184, 193, 427, 520, 553, 676, 810
ScaI AGTACT 2 cut(s) 207, 550
SchI GAGTC 2 cut(s) 450, 604
ScrFI CCNGG 1 cut(s) 662
SduI GDGCHC 1 cut(s) 226
SfaNI GCATC 3 cut(s) 314, 701, 709
SfcI CTRYAG 1 cut(s) 492
SgrAI CRCCGGYG 1 cut(s) 484
SmiMI CAYNNNNRTG 2 cut(s) 132, 177
SmlI CTYRAG 2 cut(s) 225, 744
SmoI CTYRAG 2 cut(s) 225, 744
Sse9I AATT 9 cut(s) 247, 295, 385, 461, 478, 639, 680, 789, 832
SsiI CCGC 3 cut(s) 33, 453, 722
SspI AATATT 1 cut(s) 736
SspMI CTAG 2 cut(s) 848, 859
SstI GAGCTC 1 cut(s) 226
StyD4I CCNGG 1 cut(s) 660
TaaI ACNGT 2 cut(s) 493, 618
TaiI ACGT 3 cut(s) 45, 79, 394
TaqI TCGA 4 cut(s) 220, 314, 426, 613
TasI AATT 9 cut(s) 247, 295, 385, 461, 478, 639, 680, 789, 832
TatI WGTACW 2 cut(s) 205, 548
TauI GCSGC 1 cut(s) 725
TfiI GAWTC 2 cut(s) 560, 624
TseFI GTSAC 1 cut(s) 8
TseI GCWGC 2 cut(s) 530, 725
Tsp45I GTSAC 1 cut(s) 8
TspDTI ATGAA 2 cut(s) 459, 723
TspGWI ACGGA 1 cut(s) 273
XagI CCTNNNNNAGG 1 cut(s) 108
XapI RAATTY 4 cut(s) 247, 295, 478, 789
XspI CTAG 2 cut(s) 848, 859
ZrmI AGTACT 2 cut(s) 207, 550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.