Rh6AG301800

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000369
Physical Location & Seq
Forward (+)
50038969 .. 50039529
561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG301800.1

Sequence Viewer

Length: 561 bp
ATGGAAACTGGAGCTAGTTTTTTGGCTCTAGCTGATGAAAGTATTCTAGTAGAAATTCTCTTAAGATTGCCTCTCAAGTCTATATGTAGGTTTAGGTGTGTATCAAAAGAGTGGGATGGTCTCACCAAAACTAGTTATTTCCTGGACAGACATCGTCTTCACAGCTCTCGCCGTCTTCTCCTCATCTCCTCGTCCTCTCTTGCTGCCGGAATTAGTAATAAGGAAGGAGTTGGAATCTCATTACTTGCTGATGAAGAAACGGCAGTTTCAAGTTTGAGTGTACCTTTCCTCCCCAAGGATGCAAGATGGGGTTTAGAATTTGTGGGATCTAGTAATGGGTTAGTTTGTTGCGTTACCTTGCTTAAGGGTACTCGAAGAGCCACAGTAGTATGGAACCCAGCAACAGACCAATTTAATTATTTTCCTATTGGTTTGGAGAAAAGAGTTGAGAATGCTACTTACTATCGTGTAATCATAGGTTTTGATTTCATGCATAGCATTAGTGCATACAAGTTGGTGACAGTTCACCCTTGTGTTAATCCCATTAATGATCCGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

186

Amino Acids

20.65

Weight (kDa)

8.29

Isoelectric Point (pI)

35.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 15 - 38 3.4e-06 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis pycom17g23320
rosa_chinensis RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 334, 545
AcsI RAATTY 2 cut(s) 54, 317
AfaI GTAC 2 cut(s) 282, 370
AfiI CCNNNNNNNGG 1 cut(s) 295
AflII CTTAAG 2 cut(s) 61, 362
AgsI TTSAA 1 cut(s) 270
AhlI ACTAGT 1 cut(s) 131
AjnI CCWGG 1 cut(s) 141
AleI CACNNNNGTG 1 cut(s) 531
AluBI AGCT 3 cut(s) 14, 32, 165
AluI AGCT 3 cut(s) 14, 32, 165
Alw26I GTCTC 1 cut(s) 125
AlwI GGATC 2 cut(s) 334, 545
ApeKI GCWGC 1 cut(s) 203
ApoI RAATTY 2 cut(s) 54, 317
AseI ATTAAT 1 cut(s) 546
Asp700I GAANNNNTTC 1 cut(s) 42
AsuHPI GGTGA 3 cut(s) 115, 518, 529
BbsI GAAGAC 2 cut(s) 149, 167
BbvI GCAGC 1 cut(s) 190
BccI CCATC 2 cut(s) 110, 300
BceAI ACGGC 2 cut(s) 156, 276
BciT130I CCWGG 1 cut(s) 143
BcoDI GTCTC 1 cut(s) 125
BcuI ACTAGT 1 cut(s) 131
BfaI CTAG 5 cut(s) 15, 29, 47, 132, 330
BfrI CTTAAG 2 cut(s) 61, 362
BisI GCNGC 1 cut(s) 204
BlsI GCNGC 1 cut(s) 205
Bme1390I CCNGG 1 cut(s) 143
BmiI GGNNCC 1 cut(s) 395
BmrFI CCNGG 1 cut(s) 143
BmsI GCATC 1 cut(s) 289
BpiI GAAGAC 2 cut(s) 149, 167
BpmI CTGGAG 1 cut(s) 30
BpuEI CTTGAG 1 cut(s) 59
BsaI GGTCTC 1 cut(s) 125
BsaJI CCNNGG 1 cut(s) 294
BsaXI ACNNNNNCTCC 2 cut(s) 273, 303
Bsc4I CCNNNNNNNGG 1 cut(s) 295
Bse1I ACTGG 1 cut(s) 13
BseBI CCWGG 1 cut(s) 143
BseDI CCNNGG 1 cut(s) 294
BseGI GGATG 2 cut(s) 121, 304
BseLI CCNNNNNNNGG 1 cut(s) 295
BseNI ACTGG 1 cut(s) 13
BseRI GAGGAG 2 cut(s) 170, 178
BseXI GCAGC 1 cut(s) 190
BseYI CCCAGC 1 cut(s) 397
BsiSI CCGG 1 cut(s) 207
BslI CCNNNNNNNGG 1 cut(s) 295
BsmAI GTCTC 1 cut(s) 125
BsmI GAATGC 1 cut(s) 457
Bso31I GGTCTC 1 cut(s) 125
Bsp143I GATC 2 cut(s) 326, 550
BspLI GGNNCC 1 cut(s) 395
BspPI GGATC 2 cut(s) 334, 545
BspQI GCTCTTC 1 cut(s) 370
BspTI CTTAAG 2 cut(s) 61, 362
BspTNI GGTCTC 1 cut(s) 125
BsrI ACTGG 1 cut(s) 13
BssECI CCNNGG 1 cut(s) 294
BssMI GATC 2 cut(s) 326, 550
BssT1I CCWWGG 1 cut(s) 294
Bst2UI CCWGG 1 cut(s) 143
Bst4CI ACNGT 2 cut(s) 385, 523
Bst6I CTCTTC 1 cut(s) 370
BstAFI CTTAAG 2 cut(s) 61, 362
BstENI CCTNNNNNAGG 1 cut(s) 293
BstF5I GGATG 2 cut(s) 121, 304
BstKTI GATC 2 cut(s) 329, 553
BstMAI GTCTC 1 cut(s) 125
BstMBI GATC 2 cut(s) 326, 550
BstNI CCWGG 1 cut(s) 143
BstSCI CCNGG 1 cut(s) 141
BstV1I GCAGC 1 cut(s) 190
BstV2I GAAGAC 2 cut(s) 149, 167
BstX2I RGATCY 1 cut(s) 326
BstYI RGATCY 1 cut(s) 326
BtsCI GGATG 2 cut(s) 121, 304
Csp6I GTAC 2 cut(s) 281, 369
CviAII CATG 1 cut(s) 490
CviJI RGCY 5 cut(s) 14, 26, 32, 165, 380
CviKI_1 RGCY 5 cut(s) 14, 26, 32, 165, 380
CviQI GTAC 2 cut(s) 281, 369
DpnI GATC 2 cut(s) 328, 552
DpnII GATC 2 cut(s) 326, 550
Eam1104I CTCTTC 1 cut(s) 370
EarI CTCTTC 1 cut(s) 370
Eco130I CCWWGG 1 cut(s) 294
Eco31I GGTCTC 1 cut(s) 125
EcoNI CCTNNNNNAGG 1 cut(s) 293
EcoRII CCWGG 1 cut(s) 141
EcoT14I CCWWGG 1 cut(s) 294
EcoT22I ATGCAT 1 cut(s) 495
ErhI CCWWGG 1 cut(s) 294
FaeI CATG 1 cut(s) 493
FaiI YATR 7 cut(s) 83, 85, 391, 476, 491, 495, 508
FatI CATG 1 cut(s) 489
Fnu4HI GCNGC 1 cut(s) 204
FokI GGATG 2 cut(s) 128, 311
Fsp4HI GCNGC 1 cut(s) 204
FspBI CTAG 5 cut(s) 15, 29, 47, 132, 330
GluI GCNGC 1 cut(s) 204
GsaI CCCAGC 1 cut(s) 401
GsuI CTGGAG 1 cut(s) 30
HapII CCGG 1 cut(s) 207
Hin1II CATG 1 cut(s) 493
HinfI GANTC 1 cut(s) 234
HpaII CCGG 1 cut(s) 207
HphI GGTGA 3 cut(s) 115, 518, 529
Hpy166II GTNNAC 2 cut(s) 281, 526
Hpy188I TCNGA 1 cut(s) 555
Hpy8I GTNNAC 2 cut(s) 281, 526
HpyAV CCTTC 1 cut(s) 218
HpyCH4III ACNGT 2 cut(s) 385, 523
HpyCH4V TGCA 3 cut(s) 302, 493, 506
Hsp92II CATG 1 cut(s) 493
Kzo9I GATC 2 cut(s) 326, 550
LguI GCTCTTC 1 cut(s) 370
LmnI GCTCC 1 cut(s) 11
LpnPI CCDG 4 cut(s) 128, 155, 220, 411
Lsp1109I GCAGC 1 cut(s) 190
LweI GCATC 1 cut(s) 289
MaeI CTAG 5 cut(s) 15, 29, 47, 132, 330
MaeIII GTNAC 2 cut(s) 352, 517
MalI GATC 2 cut(s) 328, 552
MboI GATC 2 cut(s) 326, 550
MboII GAAGA 4 cut(s) 149, 167, 266, 387
MflI RGATCY 1 cut(s) 326
MluCI AATT 5 cut(s) 54, 210, 317, 410, 415
MmeI TCCRAC 1 cut(s) 211
MnlI CCTC 5 cut(s) 81, 191, 199, 205, 299
Mph1103I ATGCAT 1 cut(s) 495
MroXI GAANNNNTTC 1 cut(s) 42
MseI TTAA 5 cut(s) 62, 363, 414, 537, 546
MslI CAYNNNNRTG 1 cut(s) 531
MspCI CTTAAG 2 cut(s) 61, 362
MspI CCGG 1 cut(s) 207
MspR9I CCNGG 1 cut(s) 143
Mva1269I GAATGC 1 cut(s) 457
MvaI CCWGG 1 cut(s) 143
NdeII GATC 2 cut(s) 326, 550
NlaIII CATG 1 cut(s) 493
NlaIV GGNNCC 1 cut(s) 395
NmuCI GTSAC 1 cut(s) 517
NsiI ATGCAT 1 cut(s) 495
OliI CACNNNNGTG 1 cut(s) 531
PciSI GCTCTTC 1 cut(s) 370
PctI GAATGC 1 cut(s) 457
PdmI GAANNNNTTC 1 cut(s) 42
PfeI GAWTC 1 cut(s) 234
PflFI GACNNNGTC 1 cut(s) 153
PfoI TCCNGGA 1 cut(s) 141
PkrI GCNGC 1 cut(s) 205
PshBI ATTAAT 1 cut(s) 546
Psp6I CCWGG 1 cut(s) 141
PspFI CCCAGC 1 cut(s) 397
PspGI CCWGG 1 cut(s) 141
PspN4I GGNNCC 1 cut(s) 395
PsuI RGATCY 1 cut(s) 326
PsyI GACNNNGTC 1 cut(s) 153
RsaI GTAC 2 cut(s) 282, 370
RsaNI GTAC 2 cut(s) 281, 369
RseI CAYNNNNRTG 1 cut(s) 531
SapI GCTCTTC 1 cut(s) 370
SaqAI TTAA 5 cut(s) 62, 363, 414, 537, 546
SatI GCNGC 1 cut(s) 204
Sau3AI GATC 2 cut(s) 326, 550
ScrFI CCNGG 1 cut(s) 143
SetI ASST 8 cut(s) 16, 34, 92, 98, 167, 286, 359, 481
SfaNI GCATC 1 cut(s) 289
SmiMI CAYNNNNRTG 1 cut(s) 531
SmlI CTYRAG 3 cut(s) 61, 74, 362
SmoI CTYRAG 3 cut(s) 61, 74, 362
SpeI ACTAGT 1 cut(s) 131
Sse9I AATT 5 cut(s) 54, 210, 317, 410, 415
SspMI CTAG 5 cut(s) 15, 29, 47, 132, 330
StyD4I CCNGG 1 cut(s) 141
StyI CCWWGG 1 cut(s) 294
TaaI ACNGT 2 cut(s) 385, 523
TaqI TCGA 1 cut(s) 373
TasI AATT 5 cut(s) 54, 210, 317, 410, 415
TfiI GAWTC 1 cut(s) 234
Tru1I TTAA 5 cut(s) 62, 363, 414, 537, 546
Tru9I TTAA 5 cut(s) 62, 363, 414, 537, 546
TseFI GTSAC 1 cut(s) 517
TseI GCWGC 1 cut(s) 203
Tsp45I GTSAC 1 cut(s) 517
TspDTI ATGAA 3 cut(s) 51, 267, 478
Tth111I GACNNNGTC 1 cut(s) 153
Vha464I CTTAAG 2 cut(s) 61, 362
VspI ATTAAT 1 cut(s) 546
XagI CCTNNNNNAGG 1 cut(s) 293
XapI RAATTY 2 cut(s) 54, 317
XmnI GAANNNNTTC 1 cut(s) 42
XspI CTAG 5 cut(s) 15, 29, 47, 132, 330
Zsp2I ATGCAT 1 cut(s) 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.