Rroxscaffold_2G00141640

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000369
Physical Location & Seq
Reverse (-)
79852975 .. 79853550
576 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00141640.1

Sequence Viewer

Length: 516 bp
ATGACAACATTTTTCGAGCTAAGGTCTTCACCCGAAGATCAAATTGTTGGAGAGAAGTCAAAAGCCACTGATCGATGTTCGCCACATGGAGTTGTATGCGTAGGGTTTTCTTCAATCACCTTGAACGGAGTCCTGTATTCGCCTCCGCAGATAGAGCATCGAGTATCCCATGTCTTGTCATTCAATTCGCGCGATGAGTTCTTCCATGTGATACCATTACCAGAGAGCATTAGTCGAACAAGTGCACTCTTTTCATGGAAAAATTCATTGGCATTTCTAGGAGGTCATGAACAAGAATCAGACTGTGAGCTTTGGATGATGACTGAGGAGCCTTCTGCTACTACACGAATGCCTTGGGATAAATATCTTTTATGGAGAGATACAAATGATGAAGACCAGCATTTTTACTATCCTATGAGCCAGAAATTGACAAAGCTTCCACAACATGATCAAACACATGGTTACAGATATGATCAAGCAATCAACTATGTGGAGAGCCTAGTTTCAGAGAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

171

Amino Acids

19.79

Weight (kDa)

5.16

Isoelectric Point (pI)

55.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 34 - 110 3.1e-06 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis pycom17g23320
rosa_chinensis RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 190, 192
AciI CCGC 1 cut(s) 146
AcsI RAATTY 1 cut(s) 262
AgsI TTSAA 3 cut(s) 114, 124, 184
AjuI GAANNNNNNNTTGG 2 cut(s) 251, 283
AluBI AGCT 4 cut(s) 19, 310, 436, 513
AluI AGCT 4 cut(s) 19, 310, 436, 513
Alw21I GWGCWC 1 cut(s) 247
Alw44I GTGCAC 1 cut(s) 243
ApaLI GTGCAC 1 cut(s) 243
ApoI RAATTY 1 cut(s) 262
AspLEI GCGC 1 cut(s) 192
AsuHPI GGTGA 2 cut(s) 21, 109
BaeGI GKGCMC 1 cut(s) 247
BbsI GAAGAC 2 cut(s) 18, 399
Bbv12I GWGCWC 1 cut(s) 247
BciVI GTATCC 1 cut(s) 175
BclI TGATCA 2 cut(s) 448, 472
BfaI CTAG 2 cut(s) 278, 500
BfuI GTATCC 1 cut(s) 175
BmiI GGNNCC 1 cut(s) 330
BmsI GCATC 1 cut(s) 166
BpiI GAAGAC 2 cut(s) 18, 399
Bpu10I CCTNAGC 1 cut(s) 20
Bsa29I ATCGAT 1 cut(s) 73
BsaBI GATNNNNATC 1 cut(s) 363
BsaJI CCNNGG 1 cut(s) 353
Bse8I GATNNNNATC 1 cut(s) 363
BseCI ATCGAT 1 cut(s) 73
BseDI CCNNGG 1 cut(s) 353
BseGI GGATG 1 cut(s) 321
BseJI GATNNNNATC 1 cut(s) 363
BseMII CTCAG 1 cut(s) 315
BseRI GAGGAG 1 cut(s) 341
BseSI GKGCMC 1 cut(s) 247
Bsh1236I CGCG 2 cut(s) 190, 192
BshVI ATCGAT 1 cut(s) 73
BsiHKAI GWGCWC 1 cut(s) 247
BsmI GAATGC 1 cut(s) 354
Bsp1286I GDGCHC 1 cut(s) 247
Bsp143I GATC 4 cut(s) 37, 70, 448, 472
BspACI CCGC 1 cut(s) 146
BspCNI CTCAG 1 cut(s) 316
BspDI ATCGAT 1 cut(s) 73
BspFNI CGCG 2 cut(s) 190, 192
BspHI TCATGA 1 cut(s) 286
BspLI GGNNCC 1 cut(s) 330
BssECI CCNNGG 1 cut(s) 353
BssMI GATC 4 cut(s) 37, 70, 448, 472
BssT1I CCWWGG 1 cut(s) 353
Bst4CI ACNGT 1 cut(s) 305
BstDEI CTNAG 2 cut(s) 20, 324
BstF5I GGATG 1 cut(s) 321
BstFNI CGCG 2 cut(s) 190, 192
BstHHI GCGC 1 cut(s) 192
BstKTI GATC 4 cut(s) 40, 73, 451, 475
BstMBI GATC 4 cut(s) 37, 70, 448, 472
BstMWI GCNNNNNNNGC 1 cut(s) 154
BstSLI GKGCMC 1 cut(s) 247
BstUI CGCG 2 cut(s) 190, 192
BstV2I GAAGAC 2 cut(s) 18, 399
Bsu15I ATCGAT 1 cut(s) 73
BsuI GTATCC 1 cut(s) 175
BsuTUI ATCGAT 1 cut(s) 73
BtgZI GCGATG 1 cut(s) 207
BtsCI GGATG 1 cut(s) 321
BtsIMutI CAGTG 1 cut(s) 66
CciI TCATGA 1 cut(s) 286
CfoI GCGC 1 cut(s) 192
ClaI ATCGAT 1 cut(s) 73
CviAII CATG 7 cut(s) 86, 170, 206, 255, 287, 446, 458
CviJI RGCY 8 cut(s) 19, 65, 310, 331, 420, 436, 498, 513
CviKI_1 RGCY 8 cut(s) 19, 65, 310, 331, 420, 436, 498, 513
DdeI CTNAG 2 cut(s) 20, 324
DpnI GATC 4 cut(s) 39, 72, 450, 474
DpnII GATC 4 cut(s) 37, 70, 448, 472
Eco130I CCWWGG 1 cut(s) 353
EcoT14I CCWWGG 1 cut(s) 353
ErhI CCWWGG 1 cut(s) 353
FaeI CATG 7 cut(s) 89, 173, 209, 258, 290, 449, 461
FatI CATG 7 cut(s) 85, 169, 205, 254, 286, 445, 457
FbaI TGATCA 2 cut(s) 448, 472
FokI GGATG 1 cut(s) 328
FspBI CTAG 2 cut(s) 278, 500
GlaI GCGC 1 cut(s) 191
HhaI GCGC 1 cut(s) 192
Hin1II CATG 7 cut(s) 89, 173, 209, 258, 290, 449, 461
Hin6I GCGC 1 cut(s) 190
HinP1I GCGC 1 cut(s) 190
HindIII AAGCTT 1 cut(s) 434
HinfI GANTC 2 cut(s) 129, 296
HphI GGTGA 2 cut(s) 21, 109
Hpy166II GTNNAC 1 cut(s) 245
Hpy188I TCNGA 2 cut(s) 301, 508
Hpy188III TCNNGA 1 cut(s) 287
Hpy8I GTNNAC 1 cut(s) 245
HpyAV CCTTC 1 cut(s) 342
HpyCH4III ACNGT 1 cut(s) 305
HpyCH4V TGCA 1 cut(s) 245
HpyF10VI GCNNNNNNNGC 1 cut(s) 154
HpyF3I CTNAG 2 cut(s) 20, 324
Hsp92II CATG 7 cut(s) 89, 173, 209, 258, 290, 449, 461
HspAI GCGC 1 cut(s) 190
Ksp22I TGATCA 2 cut(s) 448, 472
Kzo9I GATC 4 cut(s) 37, 70, 448, 472
LmnI GCTCC 1 cut(s) 328
LpnPI CCDG 4 cut(s) 146, 234, 410, 434
LweI GCATC 1 cut(s) 166
MaeI CTAG 2 cut(s) 278, 500
MaeIII GTNAC 1 cut(s) 461
MalI GATC 4 cut(s) 39, 72, 450, 474
MboI GATC 4 cut(s) 37, 70, 448, 472
MboII GAAGA 5 cut(s) 18, 47, 102, 193, 404
MhlI GDGCHC 1 cut(s) 247
MluCI AATT 4 cut(s) 42, 184, 262, 425
MlyI GAGTC 1 cut(s) 138
MmeI TCCRAC 1 cut(s) 28
MnlI CCTC 3 cut(s) 153, 275, 319
Mva1269I GAATGC 1 cut(s) 354
MvnI CGCG 2 cut(s) 190, 192
MwoI GCNNNNNNNGC 1 cut(s) 154
NdeII GATC 4 cut(s) 37, 70, 448, 472
NlaIII CATG 7 cut(s) 89, 173, 209, 258, 290, 449, 461
NlaIV GGNNCC 1 cut(s) 330
PagI TCATGA 1 cut(s) 286
PctI GAATGC 1 cut(s) 354
PfeI GAWTC 1 cut(s) 296
PleI GAGTC 1 cut(s) 137
PpsI GAGTC 1 cut(s) 137
PspN4I GGNNCC 1 cut(s) 330
Sau3AI GATC 4 cut(s) 37, 70, 448, 472
SchI GAGTC 1 cut(s) 138
SduI GDGCHC 1 cut(s) 247
SetI ASST 7 cut(s) 21, 26, 122, 286, 312, 438, 515
SfaNI GCATC 1 cut(s) 166
Sse9I AATT 4 cut(s) 42, 184, 262, 425
SsiI CCGC 1 cut(s) 146
SspMI CTAG 2 cut(s) 278, 500
StyI CCWWGG 1 cut(s) 353
TaaI ACNGT 1 cut(s) 305
TaqI TCGA 4 cut(s) 15, 73, 160, 235
TasI AATT 4 cut(s) 42, 184, 262, 425
TfiI GAWTC 1 cut(s) 296
TscAI CASTG 1 cut(s) 73
TspDTI ATGAA 4 cut(s) 243, 255, 303, 405
TspGWI ACGGA 1 cut(s) 141
TspRI CASTG 1 cut(s) 73
VneI GTGCAC 1 cut(s) 243
XapI RAATTY 1 cut(s) 262
XspI CTAG 2 cut(s) 278, 500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.