Prupe.3G110000_v2.0.a1

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000369
Physical Location & Seq
Reverse (-)
8974442 .. 8977715
3274 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G110000.5

Sequence Viewer

Length: 1134 bp
ATGGCCTTTCCTGAGCATCTGACGGCTGACATTCTCTCAAGACTACCCGCCAAATCTCTGGTTCGGTTCAGCTCAGTACGCAAAGAATGGCAAGCTCTGATCAGAGACCCCCATTTCATTTCTCAGCACCTCAATCTCAATATTGCAAAAGAAGACCAAAGTGGACGCCTTCTGGTAAAGTACCGTTGCAATGTTACTCGTAAGAATGTTATTTCTCTGCTTTTACATGGCACACATGGTTACATGTTATCAAAATTGGAGATACCATCATCTGTAATGGATTCCCATCACTTGAAACTTGTGGGGTCTTGTAATGGCTTACTTTGTTTAGCTCATGATAAATCTGCCCATCTTTGGTCACCTATGATTTTGTTGTGGAACCCTGCTATAAGGGAATTTAGTGTCCTACCAGACTCAGTTATTGATTCTGTCAATGATGATGATAATGTTCAGGCCCGTGGCATTGCCCACGGATTTGGGTACCACCCTCTTATTGATGACTATAAGGTTGTGAGGATTGTGTCTTTGTCTTGCTTTGGTAATGCTTGGATACGGGCGGAGGTGTATTCTTCAAAAATGGATTGTTGGCAGGAGGTTAATACTTTTCACTTTGAAATATATGAACATTCGTGCACGGCTCTGAACGGTTTGCTTTATTGGATTGCATATGGCAAGGGGGATCGTGAATTGATCGTATCGTTTGACATGTGTGATGATGTGTTTGGGGAATTGCAGTTGCCAGATTTAAGCTTTTTAGACACCCCGATGTGCACAAAACTGGCGGAATTAAAGCAATCTCTTTATTTGATAGTGTATACTTTTAGTGGGAGGCAAAGAGAGATTTATGTATGGAAAATGATTGAGCATGATGCTGAGGTTTTTTGGAAAAGGGAATGGACAATTGGACCCCTGCTTGGAATTGAGAGGCCACTGGGATGCGGTTTATATGGTGAAATTTATATGGAAAGTAGAAAAGGGGACCTGGTTTTGTATAATCCAAGTAGTGAAGAAGCTAAACACATTCCAATTTGTGGCCTTCGCTGTTCCTTAGAAGTCCATTTTTATGTGGAGAGCCTAGTTTCAACTAAAGGACAACGTGAAGTCTTACAAGAGACTAACAAGAGGATCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

378

Amino Acids

43.26

Weight (kDa)

6.15

Isoelectric Point (pI)

39.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis pycom17g23320
rosa_chinensis RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 480
AccB1I GGYRCC 1 cut(s) 480
AccB7I CCANNNNNTGG 1 cut(s) 1031
AccI GTMKAC 1 cut(s) 815
AciI CCGC 4 cut(s) 48, 557, 782, 939
AclWI GGATC 2 cut(s) 687, 1133
AcsI RAATTY 2 cut(s) 395, 954
AcyI GRCGYC 1 cut(s) 166
AfaI GTAC 3 cut(s) 78, 182, 482
AfiI CCNNNNNNNGG 3 cut(s) 354, 914, 1031
AflIII ACRYGT 2 cut(s) 243, 705
AgsI TTSAA 4 cut(s) 295, 573, 614, 1083
AjnI CCWGG 1 cut(s) 981
AjuI GAANNNNNNNTTGG 2 cut(s) 885, 917
AluBI AGCT 5 cut(s) 72, 95, 332, 750, 1013
AluI AGCT 5 cut(s) 72, 95, 332, 750, 1013
Alw21I GWGCWC 2 cut(s) 635, 773
Alw26I GTCTC 2 cut(s) 99, 1106
Alw44I GTGCAC 2 cut(s) 631, 769
AlwI GGATC 2 cut(s) 687, 1133
AoxI GGCC 4 cut(s) 3, 453, 926, 1033
ApaLI GTGCAC 2 cut(s) 631, 769
ApoI RAATTY 2 cut(s) 395, 954
Asp718I GGTACC 1 cut(s) 480
AspS9I GGNCC 3 cut(s) 454, 905, 979
AsuHPI GGTGA 2 cut(s) 351, 962
AvaII GGWCC 2 cut(s) 905, 979
BaeGI GKGCMC 2 cut(s) 635, 773
BanI GGYRCC 1 cut(s) 480
BbsI GAAGAC 1 cut(s) 159
Bbv12I GWGCWC 2 cut(s) 635, 773
BbvCI CCTCAGC 1 cut(s) 873
BccI CCATC 3 cut(s) 274, 294, 357
BceAI ACGGC 2 cut(s) 39, 651
BciT130I CCWGG 1 cut(s) 983
BciVI GTATCC 1 cut(s) 543
BclI TGATCA 1 cut(s) 99
BcoDI GTCTC 2 cut(s) 99, 1106
BfaI CTAG 1 cut(s) 1076
BfuI GTATCC 1 cut(s) 543
Bme1390I CCNGG 1 cut(s) 983
Bme18I GGWCC 2 cut(s) 905, 979
BmgT120I GGNCC 3 cut(s) 454, 905, 979
BmiI GGNNCC 4 cut(s) 380, 482, 907, 980
BmrFI CCNGG 1 cut(s) 983
BmrI ACTGGG 1 cut(s) 941
BmsI GCATC 3 cut(s) 25, 859, 926
BmuI ACTGGG 1 cut(s) 941
BpiI GAAGAC 1 cut(s) 159
Bpu10I CCTNAGC 2 cut(s) 12, 873
BpuEI CTTGAG 1 cut(s) 22
BsaBI GATNNNNATC 1 cut(s) 285
BsaHI GRCGYC 1 cut(s) 166
BsaI GGTCTC 1 cut(s) 99
BsaJI CCNNGG 2 cut(s) 457, 469
Bsc4I CCNNNNNNNGG 3 cut(s) 354, 914, 1031
Bse1I ACTGG 2 cut(s) 783, 936
Bse3DI GCAATG 2 cut(s) 196, 462
Bse8I GATNNNNATC 1 cut(s) 285
BseBI CCWGG 1 cut(s) 983
BseDI CCNNGG 2 cut(s) 457, 469
BseGI GGATG 1 cut(s) 941
BseJI GATNNNNATC 1 cut(s) 285
BseLI CCNNNNNNNGG 3 cut(s) 354, 914, 1031
BseMI GCAATG 2 cut(s) 196, 462
BseMII CTCAG 4 cut(s) 87, 137, 429, 864
BseNI ACTGG 2 cut(s) 783, 936
BseSI GKGCMC 2 cut(s) 635, 773
BshFI GGCC 4 cut(s) 5, 455, 928, 1035
BshNI GGYRCC 1 cut(s) 480
BsiHKAI GWGCWC 2 cut(s) 635, 773
BslFI GGGAC 1 cut(s) 992
BslI CCNNNNNNNGG 3 cut(s) 354, 914, 1031
BsmAI GTCTC 2 cut(s) 99, 1106
BsmFI GGGAC 1 cut(s) 992
BsnI GGCC 4 cut(s) 5, 455, 928, 1035
Bso31I GGTCTC 1 cut(s) 99
Bsp1286I GDGCHC 2 cut(s) 635, 773
Bsp143I GATC 4 cut(s) 99, 679, 690, 1125
BspACI CCGC 4 cut(s) 48, 557, 782, 939
BspANI GGCC 4 cut(s) 5, 455, 928, 1035
BspCNI CTCAG 5 cut(s) 4, 86, 136, 428, 865
BspHI TCATGA 1 cut(s) 334
BspLI GGNNCC 4 cut(s) 380, 482, 907, 980
BspPI GGATC 2 cut(s) 687, 1133
BspT107I GGYRCC 1 cut(s) 480
BspTNI GGTCTC 1 cut(s) 99
BsrDI GCAATG 2 cut(s) 196, 462
BsrI ACTGG 2 cut(s) 783, 936
BssECI CCNNGG 2 cut(s) 457, 469
BssMI GATC 4 cut(s) 99, 679, 690, 1125
BssNAI GTATAC 1 cut(s) 816
BssNI GRCGYC 1 cut(s) 166
Bst1107I GTATAC 1 cut(s) 816
Bst2UI CCWGG 1 cut(s) 983
Bst4CI ACNGT 2 cut(s) 185, 647
BstACI GRCGYC 1 cut(s) 166
BstC8I GCNNGC 1 cut(s) 93
BstDEI CTNAG 6 cut(s) 12, 73, 123, 415, 873, 1048
BstDSI CCRYGG 2 cut(s) 457, 469
BstEII GGTNACC 1 cut(s) 357
BstF5I GGATG 1 cut(s) 941
BstKTI GATC 4 cut(s) 102, 682, 693, 1128
BstMAI GTCTC 2 cut(s) 99, 1106
BstMBI GATC 4 cut(s) 99, 679, 690, 1125
BstMWI GCNNNNNNNGC 1 cut(s) 78
BstNI CCWGG 1 cut(s) 983
BstNSI RCATGY 2 cut(s) 247, 709
BstPI GGTNACC 1 cut(s) 357
BstSCI CCNGG 1 cut(s) 981
BstSLI GKGCMC 2 cut(s) 635, 773
BstV2I GAAGAC 1 cut(s) 159
BstXI CCANNNNNNTGG 2 cut(s) 58, 476
BstZ17I GTATAC 1 cut(s) 816
BsuI GTATCC 1 cut(s) 543
BsuRI GGCC 4 cut(s) 5, 455, 928, 1035
BtgI CCRYGG 2 cut(s) 457, 469
BtsCI GGATG 1 cut(s) 941
BtsIMutI CAGTG 1 cut(s) 929
Cac8I GCNNGC 1 cut(s) 93
CciI TCATGA 1 cut(s) 334
Cfr13I GGNCC 3 cut(s) 454, 905, 979
CseI GACGC 1 cut(s) 174
CsiI ACCWGGT 1 cut(s) 981
Csp6I GTAC 3 cut(s) 77, 181, 481
CviAII CATG 7 cut(s) 227, 236, 244, 335, 706, 866, 1129
CviQI GTAC 3 cut(s) 77, 181, 481
DdeI CTNAG 6 cut(s) 12, 73, 123, 415, 873, 1048
DpnI GATC 4 cut(s) 101, 681, 692, 1127
DpnII GATC 4 cut(s) 99, 679, 690, 1125
EciI GGCGGA 2 cut(s) 572, 797
Eco31I GGTCTC 1 cut(s) 99
Eco47I GGWCC 2 cut(s) 905, 979
Eco91I GGTNACC 1 cut(s) 357
EcoO109I RGGNCCY 1 cut(s) 979
EcoO65I GGTNACC 1 cut(s) 357
EcoRII CCWGG 1 cut(s) 981
FaeI CATG 7 cut(s) 230, 239, 247, 338, 709, 869, 1132
FaqI GGGAC 1 cut(s) 992
FatI CATG 7 cut(s) 226, 235, 243, 334, 705, 865, 1128
FauI CCCGC 1 cut(s) 55
FauNDI CATATG 1 cut(s) 667
FbaI TGATCA 1 cut(s) 99
FblI GTMKAC 1 cut(s) 815
FokI GGATG 1 cut(s) 948
FspBI CTAG 1 cut(s) 1076
HaeIII GGCC 4 cut(s) 5, 455, 928, 1035
HgaI GACGC 1 cut(s) 174
Hin1I GRCGYC 1 cut(s) 166
Hin1II CATG 7 cut(s) 230, 239, 247, 338, 709, 869, 1132
HindIII AAGCTT 1 cut(s) 748
HinfI GANTC 3 cut(s) 281, 413, 425
HphI GGTGA 2 cut(s) 351, 962
Hpy166II GTNNAC 4 cut(s) 164, 633, 771, 816
Hpy188I TCNGA 4 cut(s) 21, 99, 104, 642
Hpy188III TCNNGA 4 cut(s) 11, 39, 335, 683
Hpy8I GTNNAC 4 cut(s) 164, 633, 771, 816
HpyAV CCTTC 2 cut(s) 179, 1046
HpyCH4III ACNGT 2 cut(s) 185, 647
HpyCH4IV ACGT 1 cut(s) 1096
HpyCH4V TGCA 6 cut(s) 146, 189, 633, 665, 733, 771
HpyF10VI GCNNNNNNNGC 1 cut(s) 78
HpyF3I CTNAG 6 cut(s) 12, 73, 123, 415, 873, 1048
HpySE526I ACGT 1 cut(s) 1096
Hsp92I GRCGYC 1 cut(s) 166
Hsp92II CATG 7 cut(s) 230, 239, 247, 338, 709, 869, 1132
KpnI GGTACC 1 cut(s) 484
Ksp22I TGATCA 1 cut(s) 99
Kzo9I GATC 4 cut(s) 99, 679, 690, 1125
LweI GCATC 3 cut(s) 25, 859, 926
MabI ACCWGGT 1 cut(s) 981
MaeI CTAG 1 cut(s) 1076
MaeII ACGT 1 cut(s) 1096
MaeIII GTNAC 3 cut(s) 193, 239, 357
MalI GATC 4 cut(s) 101, 681, 692, 1127
MboI GATC 4 cut(s) 99, 679, 690, 1125
MboII GAAGA 3 cut(s) 164, 561, 1019
MfeI CAATTG 1 cut(s) 900
MhlI GDGCHC 2 cut(s) 635, 773
MluCI AATT 9 cut(s) 254, 395, 686, 728, 785, 900, 918, 954, 1026
MlyI GAGTC 1 cut(s) 407
MnlI CCTC 9 cut(s) 140, 498, 507, 553, 586, 822, 868, 918, 1116
MseI TTAA 3 cut(s) 597, 746, 788
MslI CAYNNNNRTG 3 cut(s) 764, 934, 1062
MspR9I CCNGG 1 cut(s) 983
MunI CAATTG 1 cut(s) 900
MvaI CCWGG 1 cut(s) 983
MwoI GCNNNNNNNGC 1 cut(s) 78
NdeI CATATG 1 cut(s) 667
NdeII GATC 4 cut(s) 99, 679, 690, 1125
NlaIII CATG 7 cut(s) 230, 239, 247, 338, 709, 869, 1132
NlaIV GGNNCC 4 cut(s) 380, 482, 907, 980
NmuCI GTSAC 1 cut(s) 357
NspI RCATGY 2 cut(s) 247, 709
PagI TCATGA 1 cut(s) 334
PciI ACATGT 2 cut(s) 243, 705
PfeI GAWTC 2 cut(s) 281, 425
PflMI CCANNNNNTGG 1 cut(s) 1031
PleI GAGTC 1 cut(s) 407
PpsI GAGTC 1 cut(s) 407
PpuMI RGGWCCY 1 cut(s) 979
PscI ACATGT 2 cut(s) 243, 705
Psp5II RGGWCCY 1 cut(s) 979
Psp6I CCWGG 1 cut(s) 981
PspEI GGTNACC 1 cut(s) 357
PspGI CCWGG 1 cut(s) 981
PspN4I GGNNCC 4 cut(s) 380, 482, 907, 980
PspPI GGNCC 3 cut(s) 454, 905, 979
PspPPI RGGWCCY 1 cut(s) 979
RsaI GTAC 3 cut(s) 78, 182, 482
RsaNI GTAC 3 cut(s) 77, 181, 481
RseI CAYNNNNRTG 3 cut(s) 764, 934, 1062
SaqAI TTAA 3 cut(s) 597, 746, 788
Sau3AI GATC 4 cut(s) 99, 679, 690, 1125
Sau96I GGNCC 3 cut(s) 454, 905, 979
SchI GAGTC 1 cut(s) 407
ScrFI CCNGG 1 cut(s) 983
SduI GDGCHC 2 cut(s) 635, 773
SexAI ACCWGGT 1 cut(s) 981
SfaNI GCATC 3 cut(s) 25, 859, 926
SinI GGWCC 2 cut(s) 905, 979
SmiMI CAYNNNNRTG 3 cut(s) 764, 934, 1062
SmlI CTYRAG 1 cut(s) 37
SmoI CTYRAG 1 cut(s) 37
Sse9I AATT 9 cut(s) 254, 395, 686, 728, 785, 900, 918, 954, 1026
SsiI CCGC 4 cut(s) 48, 557, 782, 939
SspI AATATT 1 cut(s) 142
SspMI CTAG 1 cut(s) 1076
StyD4I CCNGG 1 cut(s) 981
TaaI ACNGT 2 cut(s) 185, 647
TaiI ACGT 1 cut(s) 1099
TasI AATT 9 cut(s) 254, 395, 686, 728, 785, 900, 918, 954, 1026
TfiI GAWTC 2 cut(s) 281, 425
Tru1I TTAA 3 cut(s) 597, 746, 788
Tru9I TTAA 3 cut(s) 597, 746, 788
TscAI CASTG 1 cut(s) 936
TseFI GTSAC 1 cut(s) 357
Tsp45I GTSAC 1 cut(s) 357
TspDTI ATGAA 2 cut(s) 106, 636
TspGWI ACGGA 1 cut(s) 486
TspRI CASTG 1 cut(s) 936
Van91I CCANNNNNTGG 1 cut(s) 1031
VneI GTGCAC 2 cut(s) 631, 769
VpaK11BI GGWCC 2 cut(s) 905, 979
XapI RAATTY 2 cut(s) 395, 954
XceI RCATGY 2 cut(s) 247, 709
XmiI GTMKAC 1 cut(s) 815
XspI CTAG 1 cut(s) 1076
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.