FvH4_1g13851

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000369
Physical Location & Seq
Forward (+)
7615651 .. 7616478
828 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g13851.t1

Sequence Viewer

Length: 828 bp
ATGAACTGTCCAAGCAAGCAATGGTTAGATGCTGTGGGATCTGGTAGTGGCTTAGTTTGTCTTAATATGTCGGATCTTCGTGTGCAGTCGAATCATATAGTTGTATGGAACCCAGCCACAAAGAAGTTTAGGTTTCTTCCTAAGACGGATGATCATCATGATCTACTAGGGTTTGAGTTCTTTCATGACAGTAGAGATTACAAAGTGGTCAACATTCTCAAACCTGGTCCTGACAACACAATTCGAGCTAAAGTCTTCACCAGAAGTACAAAATCTTGGAGAGAAGTCAAAAGCCACTACTTCTGTTCATCAGGTGCATTTTTATGTGGAACGTTTTCTTCAATCACCTTGAATGGGGTGCTGTATTCTCCTATATGGATACAGGAACGAAGATCGCATAGATCGCATGTCTTGACAGTCTTGTCATTCAATTTTCACAACGAGGTCTTCAATGTGATACCATTACCAGAAAGCAGTAGAAAAGGTCAAATGAAACTACTTTCATGGAAAAATTCATTGGCATTTCTAGGAGGTCGTCATTGTGAACCACCTCGTGAGCTTTGGGTGATGACTGAGGAGCCTTCTGCTGGTACAAAACAAATCATTTGGGTTAAACAGTTTATACTTGAACCCTCAGCAGTTCCGGGATATATAATTGGATCTTGGAAGGAATACCTTTTCGGGGAAAATAATTCAGATGAGATGCAATGTTACGATCCTGCGAGCCAGAAATCATATGAGATGCAAGACTTCCAAAACATCATGATCATAGATATGGTCTCATTTACGAAAAAGCCATCAACTATGTGGAGACCCTGGTTTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

276

Amino Acids

31.81

Weight (kDa)

8.83

Isoelectric Point (pI)

49.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 10 - 209 2e-19 F-box associated beta propeller domain
FBA_1 PF07734 25 - 257 2.5e-20 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis pycom17g23320
rosa_chinensis RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 421
AclI AACGTT 1 cut(s) 332
AclWI GGATC 4 cut(s) 46, 81, 667, 710
AcsI RAATTY 1 cut(s) 511
AdeI CACNNNGTG 1 cut(s) 554
AfaI GTAC 2 cut(s) 268, 592
AfiI CCNNNNNNNGG 3 cut(s) 354, 587, 682
AgsI TTSAA 5 cut(s) 342, 352, 430, 451, 629
AjnI CCWGG 2 cut(s) 223, 815
AjuI GAANNNNNNNTTGG 2 cut(s) 500, 532
AluBI AGCT 2 cut(s) 248, 559
AluI AGCT 2 cut(s) 248, 559
Alw26I GTCTC 2 cut(s) 784, 805
AlwI GGATC 4 cut(s) 46, 81, 667, 710
ApoI RAATTY 1 cut(s) 511
Asp700I GAANNNNTTC 1 cut(s) 334
AspS9I GGNCC 1 cut(s) 227
AsuC2I CCSGG 1 cut(s) 645
AsuHPI GGTGA 3 cut(s) 250, 337, 577
AvaII GGWCC 1 cut(s) 227
BauI CACGAG 1 cut(s) 552
BbsI GAAGAC 2 cut(s) 247, 439
BbvCI CCTCAGC 1 cut(s) 634
BccI CCATC 1 cut(s) 805
BciT130I CCWGG 2 cut(s) 225, 817
BciVI GTATCC 1 cut(s) 372
BclI TGATCA 2 cut(s) 151, 765
BcnI CCSGG 1 cut(s) 645
BcoDI GTCTC 2 cut(s) 784, 805
BfaI CTAG 2 cut(s) 167, 527
BfuI GTATCC 1 cut(s) 372
Bme1390I CCNGG 3 cut(s) 225, 645, 817
Bme18I GGWCC 1 cut(s) 227
BmgT120I GGNCC 1 cut(s) 227
BmiI GGNNCC 2 cut(s) 110, 579
BmrFI CCNGG 3 cut(s) 225, 645, 817
BmsI GCATC 3 cut(s) 19, 693, 732
BpiI GAAGAC 2 cut(s) 247, 439
Bpu10I CCTNAGC 1 cut(s) 634
BpuMI CCSGG 1 cut(s) 645
BsaBI GATNNNNATC 1 cut(s) 153
BsaI GGTCTC 2 cut(s) 784, 805
BsaJI CCNNGG 1 cut(s) 815
Bsc4I CCNNNNNNNGG 3 cut(s) 354, 587, 682
Bse3DI GCAATG 2 cut(s) 26, 713
Bse8I GATNNNNATC 1 cut(s) 153
BseBI CCWGG 2 cut(s) 225, 817
BseDI CCNNGG 1 cut(s) 815
BseGI GGATG 1 cut(s) 154
BseJI GATNNNNATC 1 cut(s) 153
BseLI CCNNNNNNNGG 3 cut(s) 354, 587, 682
BseMI GCAATG 2 cut(s) 26, 713
BseMII CTCAG 2 cut(s) 564, 648
BseRI GAGGAG 1 cut(s) 590
BseYI CCCAGC 1 cut(s) 112
BsgI GTGCAG 1 cut(s) 104
BsiSI CCGG 1 cut(s) 644
BslI CCNNNNNNNGG 3 cut(s) 354, 587, 682
BsmAI GTCTC 2 cut(s) 784, 805
Bso31I GGTCTC 2 cut(s) 784, 805
Bsp143I GATC 9 cut(s) 38, 73, 151, 160, 392, 401, 659, 715, 765
BspCNI CTCAG 2 cut(s) 565, 647
BspHI TCATGA 3 cut(s) 157, 184, 762
BspLI GGNNCC 2 cut(s) 110, 579
BspPI GGATC 4 cut(s) 46, 81, 667, 710
BspTNI GGTCTC 2 cut(s) 784, 805
BsrDI GCAATG 2 cut(s) 26, 713
BssECI CCNNGG 1 cut(s) 815
BssMI GATC 9 cut(s) 38, 73, 151, 160, 392, 401, 659, 715, 765
BssSI CACGAG 1 cut(s) 552
Bst2BI CACGAG 1 cut(s) 552
Bst2UI CCWGG 2 cut(s) 225, 817
Bst4CI ACNGT 4 cut(s) 8, 191, 418, 618
BstC8I GCNNGC 2 cut(s) 17, 724
BstDEI CTNAG 4 cut(s) 52, 141, 573, 634
BstF5I GGATG 1 cut(s) 154
BstKTI GATC 9 cut(s) 41, 76, 154, 163, 395, 404, 662, 718, 768
BstMAI GTCTC 2 cut(s) 784, 805
BstMBI GATC 9 cut(s) 38, 73, 151, 160, 392, 401, 659, 715, 765
BstMWI GCNNNNNNNGC 1 cut(s) 403
BstNI CCWGG 2 cut(s) 225, 817
BstNSI RCATGY 1 cut(s) 410
BstSCI CCNGG 3 cut(s) 223, 643, 815
BstV2I GAAGAC 2 cut(s) 247, 439
BstX2I RGATCY 3 cut(s) 38, 73, 659
BstYI RGATCY 3 cut(s) 38, 73, 659
BsuI GTATCC 1 cut(s) 372
BtsCI GGATG 1 cut(s) 154
Cac8I GCNNGC 2 cut(s) 17, 724
CciI TCATGA 3 cut(s) 157, 184, 762
Cfr13I GGNCC 1 cut(s) 227
CsiI ACCWGGT 1 cut(s) 223
Csp6I GTAC 2 cut(s) 267, 591
CviAII CATG 5 cut(s) 158, 185, 407, 504, 763
CviJI RGCY 8 cut(s) 51, 116, 248, 294, 559, 580, 726, 796
CviKI_1 RGCY 8 cut(s) 51, 116, 248, 294, 559, 580, 726, 796
CviQI GTAC 2 cut(s) 267, 591
DdeI CTNAG 4 cut(s) 52, 141, 573, 634
DpnI GATC 9 cut(s) 40, 75, 153, 162, 394, 403, 661, 717, 767
DpnII GATC 9 cut(s) 38, 73, 151, 160, 392, 401, 659, 715, 765
DraIII CACNNNGTG 1 cut(s) 554
DrdI GACNNNNNNGTC 1 cut(s) 421
DseDI GACNNNNNNGTC 1 cut(s) 421
Eco31I GGTCTC 2 cut(s) 784, 805
Eco47I GGWCC 1 cut(s) 227
EcoRII CCWGG 2 cut(s) 223, 815
FaeI CATG 5 cut(s) 161, 188, 410, 507, 766
FatI CATG 5 cut(s) 157, 184, 406, 503, 762
FauNDI CATATG 1 cut(s) 736
FbaI TGATCA 2 cut(s) 151, 765
FokI GGATG 1 cut(s) 161
FspBI CTAG 2 cut(s) 167, 527
GsaI CCCAGC 1 cut(s) 116
HapII CCGG 1 cut(s) 644
Hin1II CATG 5 cut(s) 161, 188, 410, 507, 766
HincII GTYRAC 1 cut(s) 211
HindII GTYRAC 1 cut(s) 211
HinfI GANTC 1 cut(s) 91
HpaII CCGG 1 cut(s) 644
HphI GGTGA 3 cut(s) 250, 337, 577
Hpy166II GTNNAC 2 cut(s) 211, 545
Hpy188I TCNGA 2 cut(s) 73, 697
Hpy188III TCNNGA 6 cut(s) 158, 185, 230, 412, 554, 763
Hpy8I GTNNAC 2 cut(s) 211, 545
HpyAV CCTTC 2 cut(s) 591, 661
HpyCH4III ACNGT 4 cut(s) 8, 191, 418, 618
HpyCH4IV ACGT 1 cut(s) 332
HpyCH4V TGCA 4 cut(s) 85, 317, 706, 745
HpyF10VI GCNNNNNNNGC 1 cut(s) 403
HpyF3I CTNAG 4 cut(s) 52, 141, 573, 634
HpySE526I ACGT 1 cut(s) 332
Hsp92II CATG 5 cut(s) 161, 188, 410, 507, 766
Ksp22I TGATCA 2 cut(s) 151, 765
Kzo9I GATC 9 cut(s) 38, 73, 151, 160, 392, 401, 659, 715, 765
LmnI GCTCC 1 cut(s) 577
LweI GCATC 3 cut(s) 19, 693, 732
MabI ACCWGGT 1 cut(s) 223
MaeI CTAG 2 cut(s) 167, 527
MaeII ACGT 1 cut(s) 332
MaeIII GTNAC 1 cut(s) 710
MalI GATC 9 cut(s) 40, 75, 153, 162, 394, 403, 661, 717, 767
MboI GATC 9 cut(s) 38, 73, 151, 160, 392, 401, 659, 715, 765
MboII GAAGA 6 cut(s) 68, 128, 247, 330, 402, 439
MflI RGATCY 3 cut(s) 38, 73, 659
MluCI AATT 5 cut(s) 240, 430, 511, 654, 691
MmeI TCCRAC 1 cut(s) 51
MnlI CCTC 5 cut(s) 436, 524, 561, 568, 643
MroXI GAANNNNTTC 1 cut(s) 334
MseI TTAA 2 cut(s) 63, 612
MslI CAYNNNNRTG 2 cut(s) 322, 773
MspI CCGG 1 cut(s) 644
MspR9I CCNGG 3 cut(s) 225, 645, 817
MvaI CCWGG 2 cut(s) 225, 817
MwoI GCNNNNNNNGC 1 cut(s) 403
NciI CCSGG 1 cut(s) 645
NdeI CATATG 1 cut(s) 736
NdeII GATC 9 cut(s) 38, 73, 151, 160, 392, 401, 659, 715, 765
NlaIII CATG 5 cut(s) 161, 188, 410, 507, 766
NlaIV GGNNCC 2 cut(s) 110, 579
NspI RCATGY 1 cut(s) 410
PagI TCATGA 3 cut(s) 157, 184, 762
PdmI GAANNNNTTC 1 cut(s) 334
PfeI GAWTC 1 cut(s) 91
PfoI TCCNGGA 1 cut(s) 643
Psp1406I AACGTT 1 cut(s) 332
Psp6I CCWGG 2 cut(s) 223, 815
PspFI CCCAGC 1 cut(s) 112
PspGI CCWGG 2 cut(s) 223, 815
PspN4I GGNNCC 2 cut(s) 110, 579
PspPI GGNCC 1 cut(s) 227
PsuI RGATCY 3 cut(s) 38, 73, 659
RsaI GTAC 2 cut(s) 268, 592
RsaNI GTAC 2 cut(s) 267, 591
RseI CAYNNNNRTG 2 cut(s) 322, 773
SaqAI TTAA 2 cut(s) 63, 612
Sau3AI GATC 9 cut(s) 38, 73, 151, 160, 392, 401, 659, 715, 765
Sau96I GGNCC 1 cut(s) 227
ScrFI CCNGG 3 cut(s) 225, 645, 817
SexAI ACCWGGT 1 cut(s) 223
SfaNI GCATC 3 cut(s) 19, 693, 732
SinI GGWCC 1 cut(s) 227
SmiMI CAYNNNNRTG 2 cut(s) 322, 773
Sse9I AATT 5 cut(s) 240, 430, 511, 654, 691
SspMI CTAG 2 cut(s) 167, 527
StyD4I CCNGG 3 cut(s) 223, 643, 815
TaaI ACNGT 4 cut(s) 8, 191, 418, 618
TaiI ACGT 1 cut(s) 335
TaqI TCGA 2 cut(s) 89, 244
TasI AATT 5 cut(s) 240, 430, 511, 654, 691
TatI WGTACW 1 cut(s) 266
TfiI GAWTC 1 cut(s) 91
Tru1I TTAA 2 cut(s) 63, 612
Tru9I TTAA 2 cut(s) 63, 612
TspDTI ATGAA 6 cut(s) 17, 173, 297, 492, 504, 506
TspGWI ACGGA 1 cut(s) 161
VpaK11BI GGWCC 1 cut(s) 227
XapI RAATTY 1 cut(s) 511
XceI RCATGY 1 cut(s) 410
XcmI CCANNNNNNNNNTGG 2 cut(s) 18, 804
XmnI GAANNNNTTC 1 cut(s) 334
XspI CTAG 2 cut(s) 167, 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.