Rroxscaffold_7G00180790

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000369
Physical Location & Seq
Forward (+)
20127247 .. 20127630
384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00180790.1

Sequence Viewer

Length: 384 bp
ATGGAAGCTGGAAGCTCTAATTTTCTGGCTATAGCTGATCAAAGTGTTCTAGTAGAAATTCTCTCAAAATGCTATGAATGGAACCCAGCAACAACTAGTTTAATTATCTTGGATCGTCTTCCTTTGGTGGAGGAACTTGAGAATGCTATTTACCATCCTCTTATAGGTTTTGATTTCACGCATACAACTAGTGTGTGCAAATTGGTGGCAGTTTTCCCATATGGTAGTGATGATCCGAATGATCCCCTAAAACTTGGTTTTCAAGCCGAAGTCTTCTTCACCCAGAATACAACTCCTTCGAGAGGAGTTGAGTCGGGACTTGGAATTGCATCATGTAAAATGTGTTATACAACTCAGTCTGTTACCTTGGATGGAGTGCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

13.84

Weight (kDa)

4.34

Isoelectric Point (pI)

29.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis pycom17g23320
rosa_chinensis RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 120, 227, 236
AcsI RAATTY 1 cut(s) 57
AfiI CCNNNNNNNGG 2 cut(s) 164, 302
AgsI TTSAA 1 cut(s) 263
AhlI ACTAGT 2 cut(s) 95, 188
AluBI AGCT 3 cut(s) 8, 15, 35
AluI AGCT 3 cut(s) 8, 15, 35
AlwI GGATC 3 cut(s) 120, 227, 236
ApoI RAATTY 1 cut(s) 57
AsuHPI GGTGA 1 cut(s) 271
BbsI GAAGAC 2 cut(s) 110, 265
BccI CCATC 2 cut(s) 162, 365
BclI TGATCA 1 cut(s) 37
BcuI ACTAGT 2 cut(s) 95, 188
BfaI CTAG 3 cut(s) 50, 96, 189
BfmI CTRYAG 2 cut(s) 30, 380
BmiI GGNNCC 1 cut(s) 83
BmsI GCATC 1 cut(s) 338
BpiI GAAGAC 2 cut(s) 110, 265
BpuEI CTTGAG 1 cut(s) 158
BsaJI CCNNGG 1 cut(s) 366
Bsc4I CCNNNNNNNGG 2 cut(s) 164, 302
BseDI CCNNGG 1 cut(s) 366
BseGI GGATG 2 cut(s) 154, 376
BseLI CCNNNNNNNGG 2 cut(s) 164, 302
BseMII CTCAG 1 cut(s) 368
BseRI GAGGAG 1 cut(s) 318
BseYI CCCAGC 1 cut(s) 85
BslFI GGGAC 1 cut(s) 330
BslI CCNNNNNNNGG 2 cut(s) 164, 302
BsmFI GGGAC 1 cut(s) 330
BsmI GAATGC 1 cut(s) 148
Bsp143I GATC 4 cut(s) 37, 112, 232, 241
BspCNI CTCAG 1 cut(s) 367
BspLI GGNNCC 1 cut(s) 83
BspPI GGATC 3 cut(s) 120, 227, 236
BssECI CCNNGG 1 cut(s) 366
BssMI GATC 4 cut(s) 37, 112, 232, 241
BssT1I CCWWGG 1 cut(s) 366
BstDEI CTNAG 1 cut(s) 354
BstENI CCTNNNNNAGG 2 cut(s) 162, 300
BstF5I GGATG 2 cut(s) 154, 376
BstKTI GATC 4 cut(s) 40, 115, 235, 244
BstMBI GATC 4 cut(s) 37, 112, 232, 241
BstSFI CTRYAG 2 cut(s) 30, 380
BstV2I GAAGAC 2 cut(s) 110, 265
BtsCI GGATG 2 cut(s) 154, 376
CviAII CATG 1 cut(s) 333
CviJI RGCY 5 cut(s) 8, 15, 29, 35, 266
CviKI_1 RGCY 5 cut(s) 8, 15, 29, 35, 266
DdeI CTNAG 1 cut(s) 354
DpnI GATC 4 cut(s) 39, 114, 234, 243
DpnII GATC 4 cut(s) 37, 112, 232, 241
Eco130I CCWWGG 1 cut(s) 366
EcoNI CCTNNNNNAGG 2 cut(s) 162, 300
EcoT14I CCWWGG 1 cut(s) 366
ErhI CCWWGG 1 cut(s) 366
FaeI CATG 1 cut(s) 336
FaiI YATR 8 cut(s) 32, 75, 164, 183, 220, 222, 334, 348
FaqI GGGAC 1 cut(s) 330
FatI CATG 1 cut(s) 332
FauNDI CATATG 1 cut(s) 220
FbaI TGATCA 1 cut(s) 37
FokI GGATG 1 cut(s) 141
FspBI CTAG 3 cut(s) 50, 96, 189
GsaI CCCAGC 1 cut(s) 89
Hin1II CATG 1 cut(s) 336
HinfI GANTC 1 cut(s) 311
HphI GGTGA 1 cut(s) 271
Hpy188I TCNGA 1 cut(s) 237
Hpy188III TCNNGA 2 cut(s) 300, 315
HpyAV CCTTC 1 cut(s) 306
HpyCH4V TGCA 2 cut(s) 198, 329
HpyF3I CTNAG 1 cut(s) 354
Hsp92II CATG 1 cut(s) 336
Ksp22I TGATCA 1 cut(s) 37
Kzo9I GATC 4 cut(s) 37, 112, 232, 241
LpnPI CCDG 3 cut(s) 11, 99, 296
LweI GCATC 1 cut(s) 338
MaeI CTAG 3 cut(s) 50, 96, 189
MaeIII GTNAC 1 cut(s) 361
MalI GATC 4 cut(s) 39, 114, 234, 243
MboI GATC 4 cut(s) 37, 112, 232, 241
MboII GAAGA 3 cut(s) 110, 265, 268
MluCI AATT 5 cut(s) 19, 57, 102, 200, 324
MlyI GAGTC 1 cut(s) 320
MnlI CCTC 3 cut(s) 124, 168, 296
MseI TTAA 1 cut(s) 101
Mva1269I GAATGC 1 cut(s) 148
NdeI CATATG 1 cut(s) 220
NdeII GATC 4 cut(s) 37, 112, 232, 241
NlaIII CATG 1 cut(s) 336
NlaIV GGNNCC 1 cut(s) 83
PctI GAATGC 1 cut(s) 148
PleI GAGTC 1 cut(s) 319
PpsI GAGTC 1 cut(s) 319
PspFI CCCAGC 1 cut(s) 85
PspN4I GGNNCC 1 cut(s) 83
SaqAI TTAA 1 cut(s) 101
Sau3AI GATC 4 cut(s) 37, 112, 232, 241
SchI GAGTC 1 cut(s) 320
SetI ASST 5 cut(s) 10, 17, 37, 169, 368
SfaNI GCATC 1 cut(s) 338
SfcI CTRYAG 2 cut(s) 30, 380
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
SpeI ACTAGT 2 cut(s) 95, 188
Sse9I AATT 5 cut(s) 19, 57, 102, 200, 324
SspMI CTAG 3 cut(s) 50, 96, 189
StyI CCWWGG 1 cut(s) 366
TaqI TCGA 1 cut(s) 299
TasI AATT 5 cut(s) 19, 57, 102, 200, 324
Tru1I TTAA 1 cut(s) 101
Tru9I TTAA 1 cut(s) 101
TspDTI ATGAA 1 cut(s) 90
XagI CCTNNNNNAGG 2 cut(s) 162, 300
XapI RAATTY 1 cut(s) 57
XspI CTAG 3 cut(s) 50, 96, 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.