Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000369

Physical Location & Seq

Genomic Coordinates Reverse (-)

4596528 .. 4596956

Gene Structure 429 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG063300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGGATGGAGCGTTTTCTCATTCAATCTGCATGATGAGGTATTTCATAACATACAGTTACCGCAGTCTAATATATGTGTTGGCAGACACTCTGAATGGAATAATTTGGTTGCCTATTCGACATGGACCTATCATAGTTGCCAGTATGATGTTTGGGTGTTGACAACAGAATCTAGAGATATACACAAATGCCAGCTAACTGGAATTGGACTAAACAAGTTACAATTAAACCTCTGGATGGATGGTATTATGGACATCCCTATGGAGTTTGGAATGATCAATTTATTTTTAACAAAAGCAGTACTAGAATCCAAATACCTGTGTACGTATGATCTTGCAAATCAGAAAGAGAGGATACTTTTCGGACCAGAAACTGTTTACTATTGCCGTCAAGTGGTAGATTACGTGGAGAGACTAGTTCCAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0006139 GO:0006351 GO:0006366 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019899 GO:0019904 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0046483 GO:0070063 GO:0071704 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD zf-RING_2

Protein Analysis

142

Amino Acids

16.69

Weight (kDa)

5.41

Isoelectric Point (pI)

47.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000369)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica	MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica	Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis	pycom17g23320
rosa_chinensis	RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata	RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora	Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa	Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha	Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana	Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	62
AfaI	GTAC	2 cut(s)	303, 325
AfiI	CCNNNNNNNGG	2 cut(s)	238, 394
AgsI	TTSAA	1 cut(s)	25
AhlI	ACTAGT	1 cut(s)	415
AluBI	AGCT	1 cut(s)	196
AluI	AGCT	1 cut(s)	196
Alw26I	GTCTC	1 cut(s)	406
AlwNI	CAGNNNCTG	1 cut(s)	374
AspS9I	GGNCC	2 cut(s)	126, 365
AvaII	GGWCC	2 cut(s)	126, 365
BccI	CCATC	2 cut(s)	232, 236
BceAI	ACGGC	1 cut(s)	372
BciVI	GTATCC	1 cut(s)	348
BclI	TGATCA	1 cut(s)	276
BcoDI	GTCTC	1 cut(s)	406
BcuI	ACTAGT	1 cut(s)	415
BfaI	CTAG	3 cut(s)	174, 305, 416
BfuI	GTATCC	1 cut(s)	348
BmcAI	AGTACT	1 cut(s)	303
Bme18I	GGWCC	2 cut(s)	126, 365
BmgT120I	GGNCC	2 cut(s)	126, 365
BsaAI	YACGTR	2 cut(s)	327, 406
Bsc4I	CCNNNNNNNGG	2 cut(s)	238, 394
Bse1I	ACTGG	3 cut(s)	142, 205, 422
BseGI	GGATG	4 cut(s)	11, 243, 247, 255
BseLI	CCNNNNNNNGG	2 cut(s)	238, 394
BseNI	ACTGG	3 cut(s)	142, 205, 422
BslI	CCNNNNNNNGG	2 cut(s)	238, 394
BsmAI	GTCTC	1 cut(s)	406
Bsp143I	GATC	2 cut(s)	276, 331
BspACI	CCGC	1 cut(s)	62
BsrI	ACTGG	3 cut(s)	142, 205, 422
BssMI	GATC	2 cut(s)	276, 331
Bst4CI	ACNGT	2 cut(s)	57, 376
BstBAI	YACGTR	2 cut(s)	327, 406
BstC8I	GCNNGC	1 cut(s)	194
BstF5I	GGATG	4 cut(s)	11, 243, 247, 255
BstKTI	GATC	2 cut(s)	279, 334
BstMAI	GTCTC	1 cut(s)	406
BstMBI	GATC	2 cut(s)	276, 331
BstSNI	TACGTA	1 cut(s)	327
BstXI	CCANNNNNNTGG	1 cut(s)	200
BsuI	GTATCC	1 cut(s)	348
BtsCI	GGATG	4 cut(s)	11, 243, 247, 255
Cac8I	GCNNGC	1 cut(s)	194
CaiI	CAGNNNCTG	1 cut(s)	374
Cfr13I	GGNCC	2 cut(s)	126, 365
Csp6I	GTAC	2 cut(s)	302, 324
CviAII	CATG	2 cut(s)	32, 123
CviJI	RGCY	1 cut(s)	196
CviKI_1	RGCY	1 cut(s)	196
CviQI	GTAC	2 cut(s)	302, 324
DpnI	GATC	2 cut(s)	278, 333
DpnII	GATC	2 cut(s)	276, 331
Eco105I	TACGTA	1 cut(s)	327
Eco47I	GGWCC	2 cut(s)	126, 365
FaeI	CATG	2 cut(s)	35, 126
FatI	CATG	2 cut(s)	31, 122
FbaI	TGATCA	1 cut(s)	276
FokI	GGATG	4 cut(s)	18, 242, 250, 254
FspBI	CTAG	3 cut(s)	174, 305, 416
Hin1II	CATG	2 cut(s)	35, 126
HincII	GTYRAC	1 cut(s)	162
HindII	GTYRAC	1 cut(s)	162
HinfI	GANTC	2 cut(s)	170, 308
Hpy166II	GTNNAC	3 cut(s)	162, 324, 379
Hpy188I	TCNGA	3 cut(s)	94, 345, 365
Hpy188III	TCNNGA	2 cut(s)	174, 235
Hpy8I	GTNNAC	3 cut(s)	162, 324, 379
HpyCH4III	ACNGT	2 cut(s)	57, 376
HpyCH4IV	ACGT	2 cut(s)	326, 405
HpyCH4V	TGCA	2 cut(s)	31, 338
HpySE526I	ACGT	2 cut(s)	326, 405
Hsp92II	CATG	2 cut(s)	35, 126
Ksp22I	TGATCA	1 cut(s)	276
Kzo9I	GATC	2 cut(s)	276, 331
LmnI	GCTCC	1 cut(s)	9
LpnPI	CCDG	6 cut(s)	155, 186, 206, 220, 332, 381
MaeI	CTAG	3 cut(s)	174, 305, 416
MaeII	ACGT	2 cut(s)	326, 405
MaeIII	GTNAC	2 cut(s)	57, 219
MalI	GATC	2 cut(s)	278, 333
MboI	GATC	2 cut(s)	276, 331
MluCI	AATT	4 cut(s)	103, 204, 224, 280
MnlI	CCTC	3 cut(s)	31, 242, 345
MseI	TTAA	2 cut(s)	227, 290
MslI	CAYNNNNRTG	1 cut(s)	260
NdeII	GATC	2 cut(s)	276, 331
NlaIII	CATG	2 cut(s)	35, 126
PfeI	GAWTC	2 cut(s)	170, 308
Ppu21I	YACGTR	2 cut(s)	327, 406
PspPI	GGNCC	2 cut(s)	126, 365
PstNI	CAGNNNCTG	1 cut(s)	374
RsaI	GTAC	2 cut(s)	303, 325
RsaNI	GTAC	2 cut(s)	302, 324
RseI	CAYNNNNRTG	1 cut(s)	260
SaqAI	TTAA	2 cut(s)	227, 290
Sau3AI	GATC	2 cut(s)	276, 331
Sau96I	GGNCC	2 cut(s)	126, 365
ScaI	AGTACT	1 cut(s)	303
SetI	ASST	7 cut(s)	42, 131, 198, 234, 321, 329, 408
SinI	GGWCC	2 cut(s)	126, 365
SmiMI	CAYNNNNRTG	1 cut(s)	260
SnaBI	TACGTA	1 cut(s)	327
SpeI	ACTAGT	1 cut(s)	415
Sse9I	AATT	4 cut(s)	103, 204, 224, 280
SsiI	CCGC	1 cut(s)	62
SspMI	CTAG	3 cut(s)	174, 305, 416
TaaI	ACNGT	2 cut(s)	57, 376
TaiI	ACGT	2 cut(s)	329, 408
TaqI	TCGA	1 cut(s)	119
TasI	AATT	4 cut(s)	103, 204, 224, 280
TatI	WGTACW	1 cut(s)	301
TfiI	GAWTC	2 cut(s)	170, 308
Tru1I	TTAA	2 cut(s)	227, 290
Tru9I	TTAA	2 cut(s)	227, 290
TspDTI	ATGAA	1 cut(s)	35
VpaK11BI	GGWCC	2 cut(s)	126, 365
XbaI	TCTAGA	1 cut(s)	173
XspI	CTAG	3 cut(s)	174, 305, 416
ZrmI	AGTACT	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.