Rh6BG307800

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000369
Physical Location & Seq
Forward (+)
53683197 .. 53684360
1164 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG307800.1

Sequence Viewer

Length: 1164 bp
ATGGAAACTGGAGCTAGTTTTTTGGCTCTAGCTGATGAAAGTATTCTAGTAGAAATTCTCTTAAGATTGCCTCTCAAGTCTATATGTAGGTTTAGGTGTGTATCAAAAGAGTGGGATGGTCTCACCAAAACTAGTTATTTCCTGGACAGACATCGTCTTCACAGCTCTCGCCGTCTTCTCCTCATCTCCTCGTCCTCTCTTGCTGCCGGAATTAGAAATAAGAAAGGAGTTGGCATCTCATTACTTGCTGATGAAGAAACGGCAGTTTCAAGTTTGAGTGTACCTTTCCTCCCCAAGGATGCAAGATGGGGTTTAGAATTTGTGGGATCTAGTAATGGGTTACTTTGTTGCGTTACCTTGCTTAAGGGTACTCGAATAGCCACAGTAGTATGGAACCCAGCAACAGACCAATTTAATTATTTTCCTATTGGTTTGGAGAAAAGAGTTGAGAATGCTACTGCTTACTATCGTGTAATCATAGGTTTTGATTTCATGCATAGCATTAGTGCATACAAGTTGGTGACAGTTCACCCTTGTGTTAATCCCATTAATGATCCGAACCAACTTACTTTTCAAGCCAGAGTGTTCAATCCTAGTAGAAATTCTTGGAGAGTAGTTGAACCGCAACTTGAACTTACATCATGTAGAAGGTTTAATATTCGCTCTATTACTGTGAATGGAGTGCTGTATTGGTTGGTAGAGAAACAAACAGCTGGGGTGGCTCTCGTTTCGTTCAGTTTACATGATGAGGCCTTCAAGGATACATGGAAACCACTACCAGGAGAAACAGTACGCTATCTTACTAAGGGTATTTTGTTGAAGATGCAATTAATTAGATGGAAAAATTCAGTTGCAGTTGTAGGCTATCTTCCGGTGCAGGAGGGCGACCAATTTGTTATGTGGGTGGATACTACAACTGATCAAGAAACTAACACTTGTTCTTGGATTCAACGAATAAGAATCAGATGGCCATCTTCGTTATTCCACATAGGAGTTTGGAAGGATCAACATGTTTTCACCAAAAAAACTGGTGCAGATAATGATGAACCGGGGAACCTGTTTTTGTATGACCCTATAACCCAGACATTAAGTAAGGTACATGGAGAAAGAAACGTTTGCTTTTATTCCGTAGTGGGTTATGCGGAGAGCAACGTCCAGCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

387

Amino Acids

43.87

Weight (kDa)

8.93

Isoelectric Point (pI)

33.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 15 - 38 1e-05 F-box domain
FBA_3 PF08268 98 - 367 7.7e-15 F-box associated beta propeller domain
FBA_1 PF07734 107 - 330 6.8e-18 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis pycom17g23320
rosa_chinensis RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 623, 1142
AclI AACGTT 1 cut(s) 1113
AclWI GGATC 3 cut(s) 334, 548, 1011
AcoI YGGCCR 1 cut(s) 968
AcsI RAATTY 4 cut(s) 54, 317, 601, 844
AfaI GTAC 4 cut(s) 282, 370, 792, 1098
AfiI CCNNNNNNNGG 2 cut(s) 295, 779
AflII CTTAAG 2 cut(s) 61, 362
AflIII ACRYGT 1 cut(s) 1009
AgsI TTSAA 8 cut(s) 270, 575, 589, 620, 632, 757, 820, 950
AhlI ACTAGT 1 cut(s) 131
AjnI CCWGG 2 cut(s) 141, 778
AjuI GAANNNNNNNTTGG 2 cut(s) 555, 587
AleI CACNNNNGTG 1 cut(s) 534
AluBI AGCT 5 cut(s) 14, 32, 165, 713, 1159
AluI AGCT 5 cut(s) 14, 32, 165, 713, 1159
Alw26I GTCTC 1 cut(s) 125
AlwI GGATC 3 cut(s) 334, 548, 1011
AoxI GGCC 2 cut(s) 750, 968
ApeKI GCWGC 1 cut(s) 203
ApoI RAATTY 4 cut(s) 54, 317, 601, 844
AseI ATTAAT 2 cut(s) 549, 830
Asp700I GAANNNNTTC 1 cut(s) 42
AsuC2I CCSGG 1 cut(s) 1050
AsuHPI GGTGA 4 cut(s) 115, 521, 532, 1009
BalI TGGCCA 1 cut(s) 970
BarI GAAGNNNNNNTAC 2 cut(s) 852, 884
BbsI GAAGAC 2 cut(s) 149, 167
BbvI GCAGC 1 cut(s) 190
BccI CCATC 5 cut(s) 110, 300, 831, 960, 979
BceAI ACGGC 2 cut(s) 156, 276
BciT130I CCWGG 2 cut(s) 143, 780
BciVI GTATCC 2 cut(s) 754, 901
BclI TGATCA 1 cut(s) 919
BcnI CCSGG 1 cut(s) 1050
BcoDI GTCTC 1 cut(s) 125
BcuI ACTAGT 1 cut(s) 131
BfaI CTAG 6 cut(s) 15, 29, 47, 132, 330, 594
BfmI CTRYAG 1 cut(s) 1160
BfrI CTTAAG 2 cut(s) 61, 362
BfuI GTATCC 2 cut(s) 754, 901
BisI GCNGC 1 cut(s) 204
BlsI GCNGC 1 cut(s) 205
Bme1390I CCNGG 3 cut(s) 143, 780, 1050
BmiI GGNNCC 2 cut(s) 395, 1055
BmrFI CCNGG 3 cut(s) 143, 780, 1050
BmsI GCATC 3 cut(s) 243, 289, 813
BpiI GAAGAC 2 cut(s) 149, 167
BpmI CTGGAG 1 cut(s) 30
BpuEI CTTGAG 1 cut(s) 59
BpuMI CCSGG 1 cut(s) 1050
BsaBI GATNNNNATC 1 cut(s) 970
BsaI GGTCTC 1 cut(s) 125
BsaJI CCNNGG 2 cut(s) 294, 1049
BsaWI WCCGGW 1 cut(s) 871
BsaXI ACNNNNNCTCC 4 cut(s) 273, 303, 774, 804
Bsc4I CCNNNNNNNGG 2 cut(s) 295, 779
Bse1I ACTGG 2 cut(s) 13, 1033
Bse8I GATNNNNATC 1 cut(s) 970
BseBI CCWGG 2 cut(s) 143, 780
BseDI CCNNGG 2 cut(s) 294, 1049
BseGI GGATG 2 cut(s) 121, 304
BseJI GATNNNNATC 1 cut(s) 970
BseLI CCNNNNNNNGG 2 cut(s) 295, 779
BseNI ACTGG 2 cut(s) 13, 1033
BseRI GAGGAG 2 cut(s) 170, 178
BseXI GCAGC 1 cut(s) 190
BseYI CCCAGC 2 cut(s) 397, 713
BsgI GTGCAG 2 cut(s) 896, 1053
BshFI GGCC 2 cut(s) 752, 970
BsiSI CCGG 3 cut(s) 207, 872, 1049
BslI CCNNNNNNNGG 2 cut(s) 295, 779
BsmAI GTCTC 1 cut(s) 125
BsmI GAATGC 1 cut(s) 457
BsnI GGCC 2 cut(s) 752, 970
Bso31I GGTCTC 1 cut(s) 125
Bsp143I GATC 4 cut(s) 326, 553, 919, 1003
BspACI CCGC 2 cut(s) 623, 1142
BspANI GGCC 2 cut(s) 752, 970
BspLI GGNNCC 2 cut(s) 395, 1055
BspPI GGATC 3 cut(s) 334, 548, 1011
BspTI CTTAAG 2 cut(s) 61, 362
BspTNI GGTCTC 1 cut(s) 125
BsrI ACTGG 2 cut(s) 13, 1033
BssECI CCNNGG 2 cut(s) 294, 1049
BssMI GATC 4 cut(s) 326, 553, 919, 1003
BssT1I CCWWGG 1 cut(s) 294
Bst2UI CCWGG 2 cut(s) 143, 780
Bst4CI ACNGT 4 cut(s) 385, 526, 673, 790
BstAFI CTTAAG 2 cut(s) 61, 362
BstDEI CTNAG 1 cut(s) 804
BstENI CCTNNNNNAGG 1 cut(s) 293
BstF5I GGATG 2 cut(s) 121, 304
BstKTI GATC 4 cut(s) 329, 556, 922, 1006
BstMAI GTCTC 1 cut(s) 125
BstMBI GATC 4 cut(s) 326, 553, 919, 1003
BstMWI GCNNNNNNNGC 1 cut(s) 719
BstNI CCWGG 2 cut(s) 143, 780
BstNSI RCATGY 1 cut(s) 1013
BstSCI CCNGG 3 cut(s) 141, 778, 1048
BstSFI CTRYAG 1 cut(s) 1160
BstV1I GCAGC 1 cut(s) 190
BstV2I GAAGAC 2 cut(s) 149, 167
BstX2I RGATCY 1 cut(s) 326
BstYI RGATCY 1 cut(s) 326
BsuI GTATCC 2 cut(s) 754, 901
BsuRI GGCC 2 cut(s) 752, 970
BtsCI GGATG 2 cut(s) 121, 304
Csp6I GTAC 4 cut(s) 281, 369, 791, 1097
CviAII CATG 6 cut(s) 493, 642, 743, 765, 1010, 1100
CviQI GTAC 4 cut(s) 281, 369, 791, 1097
DdeI CTNAG 1 cut(s) 804
DpnI GATC 4 cut(s) 328, 555, 921, 1005
DpnII GATC 4 cut(s) 326, 553, 919, 1003
EaeI YGGCCR 1 cut(s) 968
Eco130I CCWWGG 1 cut(s) 294
Eco147I AGGCCT 1 cut(s) 752
Eco31I GGTCTC 1 cut(s) 125
EcoNI CCTNNNNNAGG 1 cut(s) 293
EcoRII CCWGG 2 cut(s) 141, 778
EcoT14I CCWWGG 1 cut(s) 294
EcoT22I ATGCAT 1 cut(s) 498
ErhI CCWWGG 1 cut(s) 294
FaeI CATG 6 cut(s) 496, 645, 746, 768, 1013, 1103
FatI CATG 6 cut(s) 492, 641, 742, 764, 1009, 1099
FbaI TGATCA 1 cut(s) 919
Fnu4HI GCNGC 1 cut(s) 204
FokI GGATG 2 cut(s) 128, 311
Fsp4HI GCNGC 1 cut(s) 204
FspBI CTAG 6 cut(s) 15, 29, 47, 132, 330, 594
GluI GCNGC 1 cut(s) 204
GsaI CCCAGC 2 cut(s) 401, 717
GsuI CTGGAG 1 cut(s) 30
HaeIII GGCC 2 cut(s) 752, 970
HapII CCGG 3 cut(s) 207, 872, 1049
Hin1II CATG 6 cut(s) 496, 645, 746, 768, 1013, 1103
HinfI GANTC 2 cut(s) 946, 960
HpaII CCGG 3 cut(s) 207, 872, 1049
HphI GGTGA 4 cut(s) 115, 521, 532, 1009
Hpy166II GTNNAC 3 cut(s) 281, 529, 740
Hpy188I TCNGA 2 cut(s) 558, 965
Hpy188III TCNNGA 1 cut(s) 923
Hpy8I GTNNAC 3 cut(s) 281, 529, 740
HpyAV CCTTC 3 cut(s) 642, 763, 994
HpyCH4III ACNGT 4 cut(s) 385, 526, 673, 790
HpyCH4IV ACGT 2 cut(s) 1113, 1152
HpyCH4V TGCA 7 cut(s) 302, 496, 509, 826, 854, 877, 1034
HpyF10VI GCNNNNNNNGC 1 cut(s) 719
HpyF3I CTNAG 1 cut(s) 804
HpySE526I ACGT 2 cut(s) 1113, 1152
Hsp92II CATG 6 cut(s) 496, 645, 746, 768, 1013, 1103
Ksp22I TGATCA 1 cut(s) 919
Kzo9I GATC 4 cut(s) 326, 553, 919, 1003
LmnI GCTCC 1 cut(s) 11
Lsp1109I GCAGC 1 cut(s) 190
LweI GCATC 3 cut(s) 243, 289, 813
MaeI CTAG 6 cut(s) 15, 29, 47, 132, 330, 594
MaeII ACGT 2 cut(s) 1113, 1152
MaeIII GTNAC 3 cut(s) 339, 352, 520
MalI GATC 4 cut(s) 328, 555, 921, 1005
MboI GATC 4 cut(s) 326, 553, 919, 1003
MboII GAAGA 6 cut(s) 149, 167, 266, 832, 860, 966
MflI RGATCY 1 cut(s) 326
MlsI TGGCCA 1 cut(s) 970
MluNI TGGCCA 1 cut(s) 970
MnlI CCTC 7 cut(s) 81, 191, 199, 205, 299, 742, 874
Mox20I TGGCCA 1 cut(s) 970
Mph1103I ATGCAT 1 cut(s) 498
MroXI GAANNNNTTC 1 cut(s) 42
MscI TGGCCA 1 cut(s) 970
MseI TTAA 8 cut(s) 62, 363, 414, 540, 549, 654, 830, 1088
MslI CAYNNNNRTG 1 cut(s) 534
Msp20I TGGCCA 1 cut(s) 970
MspA1I CMGCKG 1 cut(s) 713
MspCI CTTAAG 2 cut(s) 61, 362
MspI CCGG 3 cut(s) 207, 872, 1049
MspR9I CCNGG 3 cut(s) 143, 780, 1050
Mva1269I GAATGC 1 cut(s) 457
MvaI CCWGG 2 cut(s) 143, 780
MwoI GCNNNNNNNGC 1 cut(s) 719
NciI CCSGG 1 cut(s) 1050
NdeII GATC 4 cut(s) 326, 553, 919, 1003
NlaIII CATG 6 cut(s) 496, 645, 746, 768, 1013, 1103
NlaIV GGNNCC 2 cut(s) 395, 1055
NmuCI GTSAC 1 cut(s) 520
NsiI ATGCAT 1 cut(s) 498
NspI RCATGY 1 cut(s) 1013
OliI CACNNNNGTG 1 cut(s) 534
PceI AGGCCT 1 cut(s) 752
PciI ACATGT 1 cut(s) 1009
PctI GAATGC 1 cut(s) 457
PdmI GAANNNNTTC 1 cut(s) 42
PfeI GAWTC 2 cut(s) 946, 960
PflFI GACNNNGTC 1 cut(s) 153
PfoI TCCNGGA 1 cut(s) 141
PkrI GCNGC 1 cut(s) 205
PscI ACATGT 1 cut(s) 1009
PshBI ATTAAT 2 cut(s) 549, 830
Psp1406I AACGTT 1 cut(s) 1113
Psp6I CCWGG 2 cut(s) 141, 778
PspFI CCCAGC 2 cut(s) 397, 713
PspGI CCWGG 2 cut(s) 141, 778
PspN4I GGNNCC 2 cut(s) 395, 1055
PsuI RGATCY 1 cut(s) 326
PsyI GACNNNGTC 1 cut(s) 153
PvuII CAGCTG 1 cut(s) 713
RsaI GTAC 4 cut(s) 282, 370, 792, 1098
RsaNI GTAC 4 cut(s) 281, 369, 791, 1097
RseI CAYNNNNRTG 1 cut(s) 534
SaqAI TTAA 8 cut(s) 62, 363, 414, 540, 549, 654, 830, 1088
SatI GCNGC 1 cut(s) 204
Sau3AI GATC 4 cut(s) 326, 553, 919, 1003
ScrFI CCNGG 3 cut(s) 143, 780, 1050
SfaNI GCATC 3 cut(s) 243, 289, 813
SfcI CTRYAG 1 cut(s) 1160
SmiMI CAYNNNNRTG 1 cut(s) 534
SmlI CTYRAG 3 cut(s) 61, 74, 362
SmoI CTYRAG 3 cut(s) 61, 74, 362
SpeI ACTAGT 1 cut(s) 131
SseBI AGGCCT 1 cut(s) 752
SsiI CCGC 2 cut(s) 623, 1142
SspI AATATT 1 cut(s) 658
SspMI CTAG 6 cut(s) 15, 29, 47, 132, 330, 594
StuI AGGCCT 1 cut(s) 752
StyD4I CCNGG 3 cut(s) 141, 778, 1048
StyI CCWWGG 1 cut(s) 294
TaaI ACNGT 4 cut(s) 385, 526, 673, 790
TaiI ACGT 2 cut(s) 1116, 1155
TaqI TCGA 1 cut(s) 373
TfiI GAWTC 2 cut(s) 946, 960
Tru1I TTAA 8 cut(s) 62, 363, 414, 540, 549, 654, 830, 1088
Tru9I TTAA 8 cut(s) 62, 363, 414, 540, 549, 654, 830, 1088
TseFI GTSAC 1 cut(s) 520
TseI GCWGC 1 cut(s) 203
Tsp45I GTSAC 1 cut(s) 520
TspDTI ATGAA 4 cut(s) 51, 267, 481, 1059
TspGWI ACGGA 1 cut(s) 1117
Tth111I GACNNNGTC 1 cut(s) 153
Vha464I CTTAAG 2 cut(s) 61, 362
VspI ATTAAT 2 cut(s) 549, 830
XagI CCTNNNNNAGG 1 cut(s) 293
XapI RAATTY 4 cut(s) 54, 317, 601, 844
XceI RCATGY 1 cut(s) 1013
XmnI GAANNNNTTC 1 cut(s) 42
XspI CTAG 6 cut(s) 15, 29, 47, 132, 330, 594
Zsp2I ATGCAT 1 cut(s) 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.