Rh3CG188400

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000369
Physical Location & Seq
Reverse (-)
16579453 .. 16581127
1675 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG188400.1

Sequence Viewer

Length: 1359 bp
ATGGAAACTAGTAGAAGCAAAGTTGTTAAGGTGAGCGATACTTTAACACTAGGTCTGCAGGAAGATGTCCTATTAGAAATTCTCTCATATCTGCCTGTCAAGTCTTTACTTAGGTTTCGTTGCGTATCGCAAGAGTGGTATGCTCTCACCAAAAGTCCTTATTTCATTTCCAAACACCTTGTGCATCGCTCTAGATGCTCTAATCCACATCATCCTTGTCTTCTCTTTCTCTCGCGTCTAGCTGGAAGTTCTGAAAATAATTTCAAACCACTACTTGGATTCTCATTGCTTCGAGATGAAGAAACAACGTTTTTGAGATTACCTTTCTGGAACCTTACAAGCCAAAGAAGGGATGGTTTATGGCTTGTGGGATCTAGTAATGGCCTGGTTTGCTGTGTTCTGTTAATTGGGATTAAGAATGATAAGAATAGAACTACAGAGGGTGAAGAAGATAATGCTACTGTGTTCCAACAATTAATAGTAGTATGGAACCCAGCAACAGAACGATTTAGGTTTCTTCCTAAACCTAATAATAATATTACTTTGGATCAGGATGAGGAGGAGGATATACTACGTGTAAAGGACAACTCTTTGTCCTGTCCTCTTATAGGTTTTGATTTCGTACATGATCATGACATTACTGAATATAAACTGGTCAGAGTTTTCCATCATGATAGTGATGATCCCTACGATCATGGCAAAGTACTTACAACTTTTCGAGCTCAAGTCTTCGTCCAAATCACAAATTCTTGGAGACAAGCCAAGAACGAGTTAGGGTTTCCGTCATGTGAAAATTCTTTTGCATCAACTTCGATTACATTGAATGGAGTGCTGTATTGGAAGGTACAGCGAGCAGGGGACGAGTGCTGTGTTCTGTCATTCAATTTACGTGAGGAGGTTTTCAATGTGATACAGCTACCAATCGATCTACGAAATCATGATGATTGGGGCGGACTCCAATTATATTCATGGAGAAATTCACCGGCGACTGTAGCACTTGATTATTCGGCCAATGACGATCTCAACGCAGCGCTTTGGGTGATGAGTACTGATCAAGAATCAAAGAGGAGTTGTAAGAATGTTGCACAAATACAAAATCCAGCTTGGACTCGACAGTTCAGATTCAAATACTTAGTAATTTCAGAAGCAACGCGCCTCCTGGGAAGTTGGAAAGATCAATTTCTCTTTGCATCCGACAAAAGTGATGAAGTTTTTGATGCGGCAGCTGATAATATTGTGCCTCAAGACCTGTTTTCGTATGACCCTAAAAGCGAGACAAAGAGAAAAATTCTCAAAGATGGAGAGAGGATCAAGTTTTGTGGAGGAGTAAATTATGTGGAGAGCCTAGTTCCAGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

452

Amino Acids

51.88

Weight (kDa)

5.76

Isoelectric Point (pI)

47.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 19 - 56 5.2e-10 F-box domain
F-box-like PF12937 22 - 55 2e-07 F-box-like
FBA_1 PF07734 158 - 452 1.3e-14 F-box associated beta propeller domain
FBA_3 PF08268 159 - 371 1.3e-15 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis pycom17g23320
rosa_chinensis RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 275
AccII CGCG 2 cut(s) 235, 1153
AciI CCGC 2 cut(s) 951, 1220
AclI AACGTT 1 cut(s) 308
AclWI GGATC 4 cut(s) 379, 555, 677, 1316
AcoI YGGCCR 1 cut(s) 1008
AcsI RAATTY 5 cut(s) 78, 745, 793, 976, 1287
AdeI CACNNNGTG 1 cut(s) 181
AfaI GTAC 4 cut(s) 624, 705, 846, 1048
AfeI AGCGCT 1 cut(s) 1032
AfiI CCNNNNNNNGG 3 cut(s) 275, 349, 608
AflIII ACRYGT 1 cut(s) 574
AgsI TTSAA 5 cut(s) 265, 823, 883, 904, 1126
AhlI ACTAGT 1 cut(s) 8
AjnI CCWGG 2 cut(s) 384, 1158
AluBI AGCT 5 cut(s) 242, 722, 916, 1103, 1226
AluI AGCT 5 cut(s) 242, 722, 916, 1103, 1226
Alw21I GWGCWC 1 cut(s) 724
Alw26I GTCTC 2 cut(s) 748, 1268
AlwI GGATC 4 cut(s) 379, 555, 677, 1316
Aor51HI AGCGCT 1 cut(s) 1032
AoxI GGCC 2 cut(s) 382, 1008
ApeKI GCWGC 2 cut(s) 1028, 1223
ApoI RAATTY 5 cut(s) 78, 745, 793, 976, 1287
AseI ATTAAT 1 cut(s) 476
AspLEI GCGC 2 cut(s) 1033, 1155
AsuHPI GGTGA 5 cut(s) 43, 139, 455, 972, 1051
BanII GRGCYC 1 cut(s) 724
BbsI GAAGAC 2 cut(s) 212, 721
Bbv12I GWGCWC 1 cut(s) 724
BbvI GCAGC 2 cut(s) 1040, 1235
BccI CCATC 3 cut(s) 347, 675, 1292
BcgI CGANNNNNNTGC 2 cut(s) 792, 826
BciT130I CCWGG 2 cut(s) 386, 1160
BclI TGATCA 2 cut(s) 628, 1051
BcoDI GTCTC 2 cut(s) 748, 1268
BcuI ACTAGT 1 cut(s) 8
BfaI CTAG 7 cut(s) 9, 50, 192, 239, 375, 1346, 1357
BfmI CTRYAG 3 cut(s) 56, 435, 990
BfoI RGCGCY 1 cut(s) 1034
BisI GCNGC 3 cut(s) 1029, 1221, 1224
BlsI GCNGC 3 cut(s) 1030, 1222, 1225
BmcAI AGTACT 2 cut(s) 705, 1048
Bme1390I CCNGG 2 cut(s) 386, 1160
BmiI GGNNCC 2 cut(s) 332, 491
BmrFI CCNGG 2 cut(s) 386, 1160
BmsI GCATC 5 cut(s) 185, 193, 812, 1199, 1207
BpiI GAAGAC 2 cut(s) 212, 721
BpuEI CTTGAG 2 cut(s) 708, 1227
Bsa29I ATCGAT 1 cut(s) 924
BsaAI YACGTR 2 cut(s) 575, 890
BsaJI CCNNGG 1 cut(s) 1159
Bsc4I CCNNNNNNNGG 3 cut(s) 275, 349, 608
Bse118I RCCGGY 1 cut(s) 982
Bse1I ACTGG 2 cut(s) 657, 1352
Bse3DI GCAATG 1 cut(s) 284
BseBI CCWGG 2 cut(s) 386, 1160
BseCI ATCGAT 1 cut(s) 924
BseDI CCNNGG 1 cut(s) 1159
BseGI GGATG 4 cut(s) 211, 358, 559, 1190
BseLI CCNNNNNNNGG 3 cut(s) 275, 349, 608
BseMI GCAATG 1 cut(s) 284
BseNI ACTGG 2 cut(s) 657, 1352
BseRI GAGGAG 5 cut(s) 572, 575, 908, 1081, 1338
BseXI GCAGC 2 cut(s) 1040, 1235
BseYI CCCAGC 1 cut(s) 493
Bsh1236I CGCG 2 cut(s) 235, 1153
BshFI GGCC 2 cut(s) 384, 1010
BshVI ATCGAT 1 cut(s) 924
BsiHKAI GWGCWC 1 cut(s) 724
BsiSI CCGG 1 cut(s) 983
BslFI GGGAC 1 cut(s) 872
BslI CCNNNNNNNGG 3 cut(s) 275, 349, 608
BsmAI GTCTC 2 cut(s) 748, 1268
BsmFI GGGAC 1 cut(s) 872
BsnI GGCC 2 cut(s) 384, 1010
Bsp1286I GDGCHC 1 cut(s) 724
BspACI CCGC 2 cut(s) 951, 1220
BspANI GGCC 2 cut(s) 384, 1010
BspDI ATCGAT 1 cut(s) 924
BspFNI CGCG 2 cut(s) 235, 1153
BspHI TCATGA 3 cut(s) 631, 670, 937
BspLI GGNNCC 2 cut(s) 332, 491
BspMAI CTGCAG 1 cut(s) 60
BspPI GGATC 4 cut(s) 379, 555, 677, 1316
BsrDI GCAATG 1 cut(s) 284
BsrFI RCCGGY 1 cut(s) 982
BsrI ACTGG 2 cut(s) 657, 1352
BssAI RCCGGY 1 cut(s) 982
BssECI CCNNGG 1 cut(s) 1159
Bst2UI CCWGG 2 cut(s) 386, 1160
Bst4CI ACNGT 3 cut(s) 463, 991, 1116
BstBAI YACGTR 2 cut(s) 575, 890
BstC8I GCNNGC 1 cut(s) 852
BstDEI CTNAG 2 cut(s) 110, 1132
BstENI CCTNNNNNAGG 1 cut(s) 606
BstF5I GGATG 4 cut(s) 211, 358, 559, 1190
BstFNI CGCG 2 cut(s) 235, 1153
BstH2I RGCGCY 1 cut(s) 1034
BstHHI GCGC 2 cut(s) 1033, 1155
BstMAI GTCTC 2 cut(s) 748, 1268
BstMWI GCNNNNNNNGC 3 cut(s) 195, 390, 992
BstNI CCWGG 2 cut(s) 386, 1160
BstSCI CCNGG 2 cut(s) 384, 1158
BstSFI CTRYAG 3 cut(s) 56, 435, 990
BstUI CGCG 2 cut(s) 235, 1153
BstV1I GCAGC 2 cut(s) 1040, 1235
BstV2I GAAGAC 2 cut(s) 212, 721
BstX2I RGATCY 1 cut(s) 371
BstYI RGATCY 1 cut(s) 371
Bsu15I ATCGAT 1 cut(s) 924
BsuRI GGCC 2 cut(s) 384, 1010
BsuTUI ATCGAT 1 cut(s) 924
BtgZI GCGATG 1 cut(s) 170
BtsCI GGATG 4 cut(s) 211, 358, 559, 1190
Cac8I GCNNGC 1 cut(s) 852
CciI TCATGA 3 cut(s) 631, 670, 937
CfoI GCGC 2 cut(s) 1033, 1155
Cfr10I RCCGGY 1 cut(s) 982
ClaI ATCGAT 1 cut(s) 924
CseI GACGC 1 cut(s) 224
Csp6I GTAC 4 cut(s) 623, 704, 845, 1047
CspCI CAANNNNNGTGG 2 cut(s) 1300, 1335
CviAII CATG 7 cut(s) 626, 632, 671, 695, 786, 938, 969
CviQI GTAC 4 cut(s) 623, 704, 845, 1047
DdeI CTNAG 2 cut(s) 110, 1132
DraIII CACNNNGTG 1 cut(s) 181
EaeI YGGCCR 1 cut(s) 1008
EciI GGCGGA 1 cut(s) 966
Ecl136II GAGCTC 1 cut(s) 722
Eco24I GRGCYC 1 cut(s) 724
Eco47III AGCGCT 1 cut(s) 1032
Eco53kI GAGCTC 1 cut(s) 722
EcoICRI GAGCTC 1 cut(s) 722
EcoNI CCTNNNNNAGG 1 cut(s) 606
EcoRII CCWGG 2 cut(s) 384, 1158
EcoT38I GRGCYC 1 cut(s) 724
FaeI CATG 7 cut(s) 629, 635, 674, 698, 789, 941, 972
FaqI GGGAC 1 cut(s) 872
FatI CATG 7 cut(s) 625, 631, 670, 694, 785, 937, 968
FbaI TGATCA 2 cut(s) 628, 1051
Fnu4HI GCNGC 3 cut(s) 1029, 1221, 1224
FokI GGATG 4 cut(s) 198, 365, 566, 1177
FriOI GRGCYC 1 cut(s) 724
Fsp4HI GCNGC 3 cut(s) 1029, 1221, 1224
FspBI CTAG 7 cut(s) 9, 50, 192, 239, 375, 1346, 1357
GlaI GCGC 2 cut(s) 1032, 1154
GluI GCNGC 3 cut(s) 1029, 1221, 1224
GsaI CCCAGC 1 cut(s) 497
HaeII RGCGCY 1 cut(s) 1034
HaeIII GGCC 2 cut(s) 384, 1010
HapII CCGG 1 cut(s) 983
HgaI GACGC 1 cut(s) 224
HhaI GCGC 2 cut(s) 1033, 1155
Hin1II CATG 7 cut(s) 629, 635, 674, 698, 789, 941, 972
Hin6I GCGC 2 cut(s) 1031, 1153
HinP1I GCGC 2 cut(s) 1031, 1153
HinfI GANTC 5 cut(s) 279, 954, 1058, 1108, 1122
HpaII CCGG 1 cut(s) 983
HphI GGTGA 5 cut(s) 43, 139, 455, 972, 1051
Hpy188I TCNGA 5 cut(s) 253, 659, 1121, 1144, 1195
Hpy188III TCNNGA 9 cut(s) 192, 293, 328, 551, 632, 671, 938, 1055, 1244
HpyAV CCTTC 2 cut(s) 342, 835
HpyCH4III ACNGT 3 cut(s) 463, 991, 1116
HpyCH4IV ACGT 3 cut(s) 308, 574, 889
HpyCH4V TGCA 5 cut(s) 58, 184, 803, 1085, 1190
HpyF10VI GCNNNNNNNGC 3 cut(s) 195, 390, 992
HpyF3I CTNAG 2 cut(s) 110, 1132
HpySE526I ACGT 3 cut(s) 308, 574, 889
Hsp92II CATG 7 cut(s) 629, 635, 674, 698, 789, 941, 972
HspAI GCGC 2 cut(s) 1031, 1153
Ksp22I TGATCA 2 cut(s) 628, 1051
Lsp1109I GCAGC 2 cut(s) 1040, 1235
LweI GCATC 5 cut(s) 185, 193, 812, 1199, 1207
MaeI CTAG 7 cut(s) 9, 50, 192, 239, 375, 1346, 1357
MaeII ACGT 3 cut(s) 308, 574, 889
MboII GAAGA 7 cut(s) 74, 212, 311, 458, 461, 509, 721
MflI RGATCY 1 cut(s) 371
MhlI GDGCHC 1 cut(s) 724
MlyI GAGTC 2 cut(s) 948, 1102
MmeI TCCRAC 3 cut(s) 493, 1148, 1218
MseI TTAA 5 cut(s) 27, 44, 404, 414, 476
MslI CAYNNNNRTG 2 cut(s) 630, 675
MspA1I CMGCKG 1 cut(s) 1226
MspI CCGG 1 cut(s) 983
MspR9I CCNGG 2 cut(s) 386, 1160
MvaI CCWGG 2 cut(s) 386, 1160
MvnI CGCG 2 cut(s) 235, 1153
MwoI GCNNNNNNNGC 3 cut(s) 195, 390, 992
NlaIII CATG 7 cut(s) 629, 635, 674, 698, 789, 941, 972
NlaIV GGNNCC 2 cut(s) 332, 491
PagI TCATGA 3 cut(s) 631, 670, 937
PfeI GAWTC 3 cut(s) 279, 1058, 1122
PflMI CCANNNNNTGG 1 cut(s) 275
PkrI GCNGC 3 cut(s) 1030, 1222, 1225
PleI GAGTC 2 cut(s) 948, 1102
PpsI GAGTC 2 cut(s) 948, 1102
Ppu21I YACGTR 2 cut(s) 575, 890
PshBI ATTAAT 1 cut(s) 476
Psp124BI GAGCTC 1 cut(s) 724
Psp1406I AACGTT 1 cut(s) 308
Psp6I CCWGG 2 cut(s) 384, 1158
PspFI CCCAGC 1 cut(s) 493
PspGI CCWGG 2 cut(s) 384, 1158
PspN4I GGNNCC 2 cut(s) 332, 491
PstI CTGCAG 1 cut(s) 60
PsuI RGATCY 1 cut(s) 371
PvuII CAGCTG 1 cut(s) 1226
RsaI GTAC 4 cut(s) 624, 705, 846, 1048
RsaNI GTAC 4 cut(s) 623, 704, 845, 1047
RseI CAYNNNNRTG 2 cut(s) 630, 675
SacI GAGCTC 1 cut(s) 724
SaqAI TTAA 5 cut(s) 27, 44, 404, 414, 476
SatI GCNGC 3 cut(s) 1029, 1221, 1224
ScaI AGTACT 2 cut(s) 705, 1048
SchI GAGTC 2 cut(s) 948, 1102
ScrFI CCNGG 2 cut(s) 386, 1160
SduI GDGCHC 1 cut(s) 724
SfaNI GCATC 5 cut(s) 185, 193, 812, 1199, 1207
SfcI CTRYAG 3 cut(s) 56, 435, 990
SgrAI CRCCGGYG 1 cut(s) 982
SmiMI CAYNNNNRTG 2 cut(s) 630, 675
SmlI CTYRAG 2 cut(s) 723, 1242
SmoI CTYRAG 2 cut(s) 723, 1242
SpeI ACTAGT 1 cut(s) 8
SsiI CCGC 2 cut(s) 951, 1220
SspI AATATT 2 cut(s) 538, 1234
SspMI CTAG 7 cut(s) 9, 50, 192, 239, 375, 1346, 1357
SstI GAGCTC 1 cut(s) 724
StyD4I CCNGG 2 cut(s) 384, 1158
TaaI ACNGT 3 cut(s) 463, 991, 1116
TaiI ACGT 3 cut(s) 311, 577, 892
TaqI TCGA 5 cut(s) 292, 718, 812, 924, 1111
TatI WGTACW 2 cut(s) 703, 1046
TauI GCSGC 1 cut(s) 1223
TfiI GAWTC 3 cut(s) 279, 1058, 1122
Tru1I TTAA 5 cut(s) 27, 44, 404, 414, 476
Tru9I TTAA 5 cut(s) 27, 44, 404, 414, 476
TseI GCWGC 2 cut(s) 1028, 1223
TspDTI ATGAA 4 cut(s) 154, 312, 957, 1221
TspGWI ACGGA 1 cut(s) 771
Van91I CCANNNNNTGG 1 cut(s) 275
VspI ATTAAT 1 cut(s) 476
XagI CCTNNNNNAGG 1 cut(s) 606
XapI RAATTY 5 cut(s) 78, 745, 793, 976, 1287
XbaI TCTAGA 1 cut(s) 191
XcmI CCANNNNNNNNNTGG 1 cut(s) 350
XspI CTAG 7 cut(s) 9, 50, 192, 239, 375, 1346, 1357
ZrmI AGTACT 2 cut(s) 705, 1048
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.