Rh2CG148700

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000369
Physical Location & Seq
Reverse (-)
13010060 .. 13010479
420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG148700.1

Sequence Viewer

Length: 420 bp
ATGTCTTGTCATTCAATTTGGGAGATGAGGTACGTCTTCCATGTGATACCATTACCAGAGAGCATTAGTCGAACAAGTGCACTCTTTTCATGGAAAAATTCATTGGCATTTCTGGGAGGTCATGAACAAGAACCAGACTGTGAGCTTTGGATGATGACTGAGGAGCCTTCTGCTACTACACGAATGCCTTGGGTTAAACAGCTTATCCTCAAACCCTCATCACTGTCAAGATATATCTTTGGATCTTGGAAGGATGAATATCTTTTATGGAGAGATACAAATGATGAAGACCTGCATTTTTACAATCCTACGAGCCAGAAATTGACAAAGCTTCCACAACATGATCAAACACATGGTTACAGATATGATCAAGCAATCAACTATATATGTGGAGAGCCTAGTTTCAGTAGACTGAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

139

Amino Acids

16.45

Weight (kDa)

5.82

Isoelectric Point (pI)

51.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis pycom17g23320
rosa_chinensis RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 300
AccI GTMKAC 1 cut(s) 409
AclWI GGATC 1 cut(s) 250
AcsI RAATTY 1 cut(s) 97
AfaI GTAC 1 cut(s) 32
AgsI TTSAA 1 cut(s) 15
AjuI GAANNNNNNNTTGG 2 cut(s) 86, 118
AluBI AGCT 4 cut(s) 145, 202, 331, 417
AluI AGCT 4 cut(s) 145, 202, 331, 417
Alw21I GWGCWC 1 cut(s) 82
Alw44I GTGCAC 1 cut(s) 78
AlwI GGATC 1 cut(s) 250
ApaLI GTGCAC 1 cut(s) 78
ApoI RAATTY 1 cut(s) 97
BaeGI GKGCMC 1 cut(s) 82
BbsI GAAGAC 2 cut(s) 28, 294
Bbv12I GWGCWC 1 cut(s) 82
BclI TGATCA 2 cut(s) 343, 367
BfaI CTAG 1 cut(s) 399
BfuAI ACCTGC 1 cut(s) 300
BmiI GGNNCC 1 cut(s) 165
BpiI GAAGAC 2 cut(s) 28, 294
BsaBI GATNNNNATC 1 cut(s) 258
BsaJI CCNNGG 1 cut(s) 188
BsaXI ACNNNNNCTCC 2 cut(s) 14, 44
Bse8I GATNNNNATC 1 cut(s) 258
BseDI CCNNGG 1 cut(s) 188
BseGI GGATG 2 cut(s) 156, 259
BseJI GATNNNNATC 1 cut(s) 258
BseMII CTCAG 2 cut(s) 150, 404
BseRI GAGGAG 1 cut(s) 176
BseSI GKGCMC 1 cut(s) 82
BsiHKAI GWGCWC 1 cut(s) 82
BsmI GAATGC 1 cut(s) 189
Bsp1286I GDGCHC 1 cut(s) 82
Bsp143I GATC 3 cut(s) 242, 343, 367
BspCNI CTCAG 2 cut(s) 151, 405
BspHI TCATGA 1 cut(s) 121
BspLI GGNNCC 1 cut(s) 165
BspMI ACCTGC 1 cut(s) 300
BspPI GGATC 1 cut(s) 250
BssECI CCNNGG 1 cut(s) 188
BssMI GATC 3 cut(s) 242, 343, 367
BssT1I CCWWGG 1 cut(s) 188
Bst4CI ACNGT 2 cut(s) 140, 225
BstDEI CTNAG 2 cut(s) 159, 413
BstF5I GGATG 2 cut(s) 156, 259
BstKTI GATC 3 cut(s) 245, 346, 370
BstMBI GATC 3 cut(s) 242, 343, 367
BstSLI GKGCMC 1 cut(s) 82
BstV2I GAAGAC 2 cut(s) 28, 294
BstX2I RGATCY 1 cut(s) 242
BstYI RGATCY 1 cut(s) 242
BtsCI GGATG 2 cut(s) 156, 259
BtsIMutI CAGTG 1 cut(s) 221
BveI ACCTGC 1 cut(s) 300
CciI TCATGA 1 cut(s) 121
Csp6I GTAC 1 cut(s) 31
CviAII CATG 5 cut(s) 41, 90, 122, 341, 353
CviJI RGCY 7 cut(s) 145, 166, 202, 315, 331, 397, 417
CviKI_1 RGCY 7 cut(s) 145, 166, 202, 315, 331, 397, 417
CviQI GTAC 1 cut(s) 31
DdeI CTNAG 2 cut(s) 159, 413
DpnI GATC 3 cut(s) 244, 345, 369
DpnII GATC 3 cut(s) 242, 343, 367
Eco130I CCWWGG 1 cut(s) 188
EcoT14I CCWWGG 1 cut(s) 188
ErhI CCWWGG 1 cut(s) 188
FaeI CATG 5 cut(s) 44, 93, 125, 344, 356
FatI CATG 5 cut(s) 40, 89, 121, 340, 352
FbaI TGATCA 2 cut(s) 343, 367
FblI GTMKAC 1 cut(s) 409
FokI GGATG 2 cut(s) 163, 266
FspBI CTAG 1 cut(s) 399
Hin1II CATG 5 cut(s) 44, 93, 125, 344, 356
HindIII AAGCTT 1 cut(s) 329
Hpy166II GTNNAC 2 cut(s) 80, 410
Hpy188III TCNNGA 2 cut(s) 122, 228
Hpy8I GTNNAC 2 cut(s) 80, 410
HpyAV CCTTC 2 cut(s) 177, 244
HpyCH4III ACNGT 2 cut(s) 140, 225
HpyCH4IV ACGT 1 cut(s) 33
HpyCH4V TGCA 2 cut(s) 80, 295
HpyF3I CTNAG 2 cut(s) 159, 413
HpySE526I ACGT 1 cut(s) 33
Hsp92II CATG 5 cut(s) 44, 93, 125, 344, 356
Ksp22I TGATCA 2 cut(s) 343, 367
Kzo9I GATC 3 cut(s) 242, 343, 367
LmnI GCTCC 1 cut(s) 163
LpnPI CCDG 5 cut(s) 69, 98, 147, 305, 329
MaeI CTAG 1 cut(s) 399
MaeII ACGT 1 cut(s) 33
MaeIII GTNAC 1 cut(s) 356
MalI GATC 3 cut(s) 244, 345, 369
MboI GATC 3 cut(s) 242, 343, 367
MboII GAAGA 2 cut(s) 28, 299
MflI RGATCY 1 cut(s) 242
MhlI GDGCHC 1 cut(s) 82
MluCI AATT 3 cut(s) 15, 97, 320
MnlI CCTC 5 cut(s) 21, 110, 154, 218, 226
MseI TTAA 1 cut(s) 195
Mva1269I GAATGC 1 cut(s) 189
NdeII GATC 3 cut(s) 242, 343, 367
NlaIII CATG 5 cut(s) 44, 93, 125, 344, 356
NlaIV GGNNCC 1 cut(s) 165
PagI TCATGA 1 cut(s) 121
PctI GAATGC 1 cut(s) 189
PspN4I GGNNCC 1 cut(s) 165
PsuI RGATCY 1 cut(s) 242
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
SaqAI TTAA 1 cut(s) 195
Sau3AI GATC 3 cut(s) 242, 343, 367
SduI GDGCHC 1 cut(s) 82
SetI ASST 8 cut(s) 32, 36, 121, 147, 204, 294, 333, 419
Sse9I AATT 3 cut(s) 15, 97, 320
SspMI CTAG 1 cut(s) 399
StyI CCWWGG 1 cut(s) 188
TaaI ACNGT 2 cut(s) 140, 225
TaiI ACGT 1 cut(s) 36
TaqI TCGA 1 cut(s) 70
TasI AATT 3 cut(s) 15, 97, 320
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TscAI CASTG 1 cut(s) 228
TspDTI ATGAA 5 cut(s) 78, 90, 138, 270, 300
TspRI CASTG 1 cut(s) 228
VneI GTGCAC 1 cut(s) 78
XapI RAATTY 1 cut(s) 97
XmiI GTMKAC 1 cut(s) 409
XspI CTAG 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.