Rh6DG298900

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Forward (+)
50036748 .. 50038742
1995 bp
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UTR
Exon/CDS
Intron
Rh6DG298900.1

Sequence Viewer

Length: 216 bp
ATGGGAAGAAGAGAACCCTCCTCCGCGCCTACATTTGAGCTTCTCAGGAGGTTGAATAAGAAAGAGTTACCATGTATCTTCAGTTCTACATCAACGAGAATGGTGATAAAGTCTACACCACCAAGAAAGAATCACCACTGGGGCTTGCTACGCAATCTGCCCACCCTGCCCGCTTCTCCCCTGATGACAAGTATTCAAGGCAAAGATATCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

71

Amino Acids

8.09

Weight (kDa)

11.33

Isoelectric Point (pI)

64.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012395)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 113
AccII CGCG 1 cut(s) 26
AciI CCGC 2 cut(s) 24, 171
AcuI CTGAAG 1 cut(s) 64
AgsI TTSAA 2 cut(s) 55, 197
AluBI AGCT 1 cut(s) 40
AluI AGCT 1 cut(s) 40
AspLEI GCGC 1 cut(s) 28
AsuHPI GGTGA 2 cut(s) 115, 125
BmrI ACTGGG 1 cut(s) 148
BmuI ACTGGG 1 cut(s) 148
Bse1I ACTGG 1 cut(s) 143
BseMII CTCAG 1 cut(s) 58
BseNI ACTGG 1 cut(s) 143
BseRI GAGGAG 1 cut(s) 10
Bsh1236I CGCG 1 cut(s) 26
BspACI CCGC 2 cut(s) 24, 171
BspCNI CTCAG 1 cut(s) 57
BspFNI CGCG 1 cut(s) 26
BsrI ACTGG 1 cut(s) 143
Bst6I CTCTTC 1 cut(s) 4
BstC8I GCNNGC 2 cut(s) 146, 171
BstDEI CTNAG 1 cut(s) 44
BstFNI CGCG 1 cut(s) 26
BstHHI GCGC 1 cut(s) 28
BstMWI GCNNNNNNNGC 2 cut(s) 150, 166
BstUI CGCG 1 cut(s) 26
BtsIMutI CAGTG 1 cut(s) 136
Cac8I GCNNGC 2 cut(s) 146, 171
CfoI GCGC 1 cut(s) 28
CviAII CATG 1 cut(s) 72
CviJI RGCY 2 cut(s) 40, 144
CviKI_1 RGCY 2 cut(s) 40, 144
DdeI CTNAG 1 cut(s) 44
Eam1104I CTCTTC 1 cut(s) 4
EarI CTCTTC 1 cut(s) 4
Eco32I GATATC 1 cut(s) 208
Eco57I CTGAAG 1 cut(s) 64
EcoRV GATATC 1 cut(s) 208
FaeI CATG 1 cut(s) 75
FaiI YATR 1 cut(s) 73
FatI CATG 1 cut(s) 71
FauI CCCGC 1 cut(s) 178
FblI GTMKAC 1 cut(s) 113
GlaI GCGC 1 cut(s) 27
HhaI GCGC 1 cut(s) 28
Hin1II CATG 1 cut(s) 75
Hin6I GCGC 1 cut(s) 26
HinP1I GCGC 1 cut(s) 26
HinfI GANTC 1 cut(s) 130
HphI GGTGA 2 cut(s) 115, 125
Hpy166II GTNNAC 1 cut(s) 114
Hpy188I TCNGA 1 cut(s) 215
Hpy188III TCNNGA 1 cut(s) 46
Hpy8I GTNNAC 1 cut(s) 114
HpyF10VI GCNNNNNNNGC 2 cut(s) 150, 166
HpyF3I CTNAG 1 cut(s) 44
Hsp92II CATG 1 cut(s) 75
HspAI GCGC 1 cut(s) 26
LpnPI CCDG 4 cut(s) 31, 124, 179, 194
MaeIII GTNAC 1 cut(s) 66
MboII GAAGA 4 cut(s) 18, 21, 70, 202
MnlI CCTC 3 cut(s) 28, 31, 42
MvnI CGCG 1 cut(s) 26
MwoI GCNNNNNNNGC 2 cut(s) 150, 166
NlaIII CATG 1 cut(s) 75
PfeI GAWTC 1 cut(s) 130
PsrI GAACNNNNNNTAC 2 cut(s) 67, 99
SetI ASST 2 cut(s) 42, 53
SsiI CCGC 2 cut(s) 24, 171
TfiI GAWTC 1 cut(s) 130
TscAI CASTG 1 cut(s) 143
TspRI CASTG 1 cut(s) 143
XmiI GTMKAC 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.